Array 1 912745-918769 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHMO010000001.1 Bifidobacterium longum subsp. infantis isolate B.longum_ssp_infantis_2_mod, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 912745 33 100.0 36 ................................. TCCGCCTTGCCGTCGATCGTGGATTTGAGGCCCTGT 912814 33 100.0 35 ................................. CGCGACTCCTGCGGCTTTCTGTCGGCCGTACATGT 912882 33 100.0 35 ................................. AGCATCCCGCAACGCTACCGTAATCTCCGCAAACT 912950 33 100.0 35 ................................. TTCGAAGACAAGCGCATTGGGCGGTTTCTTGCGAC 913018 33 100.0 35 ................................. CACTCAGACTGATCGCACTGGTGTTGAGCGAGGCG 913086 33 100.0 35 ................................. ACGCAGACGCTTCCCAATGCGTTCCAGTCCGTCGT 913154 33 100.0 34 ................................. CATCATCCGGCGCGCGACCGGCGGCGGATGGCGT 913221 33 100.0 33 ................................. GAGAACGCGCGCAAGTTCCCCGAACTGTCGGAA 913287 33 100.0 34 ................................. ATCGTGGTCGGCACCACGTGGGGCACGGGACAGG 913354 33 100.0 35 ................................. CTGCAGGAACTGTTCGCGCGTCTGAACGAGGAATC 913422 33 100.0 34 ................................. GAATGGGAATTGGAAATACCGGGATAGCGTGGCG 913489 33 100.0 35 ................................. GATGCCACTCAACTAACCCACTCGACTGACCCAAG 913557 33 100.0 33 ................................. ATGCGCTGCAGCGCATGGCGCGACATGGCCGGC 913623 33 100.0 33 ................................. CGAATGGCAGCGCAACCGGCTGCGCCGCGAACG 913689 33 100.0 36 ................................. ATGGCTGAGTGTGAACGGCTCTCGGGCGGTGTGCGC 913758 33 100.0 35 ................................. TCGCCTGGACGAAAACCAAGGAAGCCTCACGCAAG 913826 33 100.0 35 ................................. TCATACTCCAATAACAACAAAAACGACACCATGAG 913894 33 100.0 33 ................................. GAAAGCCTGTGCGCGATCGTGCTCAGGCCGGAG 913960 33 100.0 33 ................................. CGCGACGAGGTCGGCAAATGGATACCCGCCGGC 914026 33 100.0 34 ................................. TCGAAGCCGACGCCCTGACTGACCTTGACGACGG 914093 33 100.0 34 ................................. CGCACATGGGACGTCAACGCCACCGTGGACGACG 914160 33 100.0 33 ................................. ACGGTCCCGTCCGGATACCTCTGCCGCCACCGG 914226 33 100.0 36 ................................. AAAATCTTCGAGGCCGGCACCGACTGCCCGTGGGTC 914295 33 100.0 35 ................................. GACAGCCTCGGAGTATGGGCGGGCATGCGACTCGA 914363 33 100.0 34 ................................. TACATGGCTACCGCGTACATGCTTTGGGTCAACA 914430 33 100.0 35 ................................. CTTGGTCATGCTATGTGGCAGCTGGAGGTCATGCT 914498 33 100.0 35 ................................. TCCAAGCAGTGGAAGGACTGGCAGGCCGAGGGGAA 914566 33 100.0 35 ................................. AGATCGAGGCGTCCGGACCAGCCGTTGAGACTGCC 914634 33 100.0 34 ................................. TGCTGGTCTGGCATACGTATGATCGGCTGCCGTC 914701 33 100.0 35 ................................. TTGTTGCCGTAGGGGAGGATGTACGCCTGTCCCAG 914769 33 100.0 35 ................................. GGTGATGAGGTCTTGTGCGCGGGTGTCGATGGGTA 914837 33 100.0 33 ................................. CCCGTCCCATGTGACCTTGCGGCCCTTGAGCGT 914903 33 100.0 35 ................................. TTGAACTTGTCGGTCGAATCACTCATGGCCATCAC 914971 33 100.0 32 ................................. ACGTTCAACAGTTCGGCCACCTCGACCGTCGT 915036 33 100.0 34 ................................. CCGCAGTCTCGATTTGCGCCATGATTTGACGAAA 915103 33 100.0 32 ................................. ATATCCCAGCTGCCAGGCAATATCTGGAACTG 915168 33 100.0 34 ................................. CGCTTCACGTGGAGCCGACCATAGTCAACCAATC 915235 33 100.0 33 ................................. AGTTCGCCGCTGGCCAGCGTGCTGTATCGTTTC 915301 33 100.0 36 ................................. CCAGTTCGGCCACGCGCACGCCGTCCTTGTCGGCGG 915370 33 100.0 35 ................................. CCGGCACCAGCGCCGAGGGCAACATCACCACCATC 915438 33 100.0 33 ................................. ACCGTGCTGCTGCGCATCTCCGACCGCGTCGGC 915504 33 100.0 33 ................................. GATATGGCCGCGCCTTCCTTGACGGTCAGTTGG 915570 33 100.0 35 ................................. CAGAAAGGGATAATCATGGCTTTGGAAGTGAAGCG 915638 33 100.0 35 ................................. ATACCGACGACCATCACCCGTTTGCAGTTGATGGG 915706 33 100.0 36 ................................. GTCGGTCATTGGTTCCTCACTTTCGTTCGGTTGATT 915775 33 100.0 36 ................................. TCCACAGCGAGCCTGTTCATGTCGTACCTGTCAAGC 915844 33 100.0 35 ................................. CCTAACCCAGACCGAAGTGCTGACGCTGATTAACT 915912 33 100.0 34 ................................. CTTGCGGTTTCGAGCATCTCCTTGGCCTGTCTGA 915979 33 100.0 35 ................................. ACTGATATGACCGTCTGAAAGATTATCTCCGCAGA 916047 33 100.0 32 ................................. GCAGAATGTGCAGAAATCACGGGATGTCGAGG 916112 33 100.0 34 ................................. TCAGACTGCTGGTTCGTCGGGGGCGAGGACGCGG 916179 33 100.0 34 ................................. GCCAACGCCGGCATGATCGGCAGCGACGCGGGCA 916246 33 100.0 35 ................................. CGAGTGAGGGTCGGCTCCCCCGAAATCATCGACAG 916314 33 100.0 36 ................................. AAAAAATCGATTGTCAGATTTGCACGCCACGGTGAG 916383 33 100.0 34 ................................. AAAGAGGCGCTACGATTGTAGCGCCTCACGCGGA 916450 33 100.0 35 ................................. AAGACGCTGCGTGAGGACGGCCTGCTGATGAAGAG 916518 33 97.0 34 ............................A.... ATCGACAAGGCCACCAAGCTGTTGCTGTCCGACA 916585 33 100.0 34 ................................. TGGTATGACGATGCCCGTGTTCGCGTTCGGGGTC 916652 33 100.0 33 ................................. TACCGCGAATGGCTCATCGACCCCAACGCCCCC 916718 33 100.0 34 ................................. GTTGCCTGCGTGACCGCGCTCCACGAGGCTGTGG 916785 33 100.0 35 ................................. ACGCTGTTGGCGGCGATCTTGTCCGCCGTGACCGC 916853 33 100.0 37 ................................. TCCGCCTTGGACAGGAGCCAGCTGATTGACTGGCCGG 916923 33 100.0 35 ................................. ATGACGACCGCGAGGAACAACAGCGGCAGGATGAT 916991 33 100.0 34 ................................. CATTATTAAGCAGGTAATAAAATGGCTAACGTCA 917058 33 100.0 33 ................................. CGGACAATATCGAACAGGCGTATTACGGATACA 917124 33 100.0 34 ................................. GACGATACGGCTTTGGTGTGGCTTCGCCGGCATC 917191 33 100.0 35 ................................. GTGGGCTGCCGGTTCGCTAAGCCCGCGGGCCGCCT 917259 33 100.0 33 ................................. ACCTCGCAGCAGGTCGCCTGGTCGCCGGCGTAG 917325 33 100.0 36 ................................. ATACCGTGACACGCTGACCGTATTATATTACGTGCA 917394 33 100.0 32 ................................. AAGAATCTCTGCAATCCATCGCCAGCCCTGCA 917459 33 100.0 34 ................................. TTGCACTGCCGGAACCGTTCAATCGTGTAGCGTT 917526 33 100.0 33 ................................. GTCCTGCAGGGCATCGAGATGGGCAACGGAGCG 917592 33 100.0 34 ................................. CATTCCCGTGCGGCGAAGTAGTCGATGAGATCGT 917659 33 100.0 34 ................................. ATGTCGGTCAACAACGGCAGTGCGTTGGCGTTGG 917726 33 100.0 33 ................................. ACGATCACCGACCACCAGTTGCGATTCGAGATA 917792 33 100.0 35 ................................. CACGCGGCCGGTCTTCGCAAGCCACAATTCGTAAG 917860 33 100.0 35 ................................. TCGGCCAACTCCGCAAGGAAGGACTATTGCCGACC 917928 32 97.0 36 .........-....................... CGGCATGGTTTGCAATTCACTCCAAATCACTCCAAG 917996 33 100.0 34 ................................. TCCTACGGGGGTCGTGACGGAGACAATCAGAAAA 918063 33 100.0 35 ................................. ACACGACGCAAATCAAGATTTACCTCGCGCTTTGT 918131 33 97.0 34 ..............A.................. AACGCGCCCGAGCCGAGCGTGTTGATCTGATTCA 918198 33 100.0 36 ................................. AGGTTGAGTTTCGCGCTGACGGTCACGTCGGCGGGC 918267 33 100.0 34 ................................. ATGCTGGTCACGATCCTGCCGTTCGCGTCCACCA 918334 33 97.0 33 ............G.................... AGGACAGGCCAGCCACCCTCACGCCCGCCATTC 918400 33 100.0 35 ................................. ATGTACGAAAAGTTAATGGGCAGGTCGTTGGCCGT 918468 33 97.0 34 ..........................G...... TGCTGGGACGAGATGTTGGAAACGACGAACTCGC 918535 33 100.0 35 ................................. AAAACAGCATTCGAAACCAACCCCGACGAGGTAAG 918603 33 97.0 35 .............G................... TGCAAATGGAAAACGTGCTGTCTGATGAAGCGTTC 918671 33 93.9 34 ....T...T........................ ATTGACATGTAACACACATTCATCTGCACGGTAT 918738 32 90.9 0 ..........A.-T................... | ========== ====== ====== ====== ================================= ===================================== ================== 90 33 99.6 34 GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Left flank : TGCGGAACGTGGCCAAGATTTGCATGAGATACGGTCAACGCGTGCAGAACAGCGTCTTCGAGTGCTCCGTATCGCCGTCCGATTACCTGATTCTGAAGCATGATTTGGCGGCGGTTATGGATGAGTCGCAAGACAGTCTTCGGTACTACAACCTCGGGGCGAAGTATTCCTCGAGGATCGAATATCGAGGAAGGCAGCGACATATACCTGTTGATGACGTGATGATGCTTTGATGCCGGATTGGTGTGTGGCGTGTGGATATTGGTCGGTGCGAGCCCCAAGCTCTCATGAAGTACTGGGCTGTTCGCACCACGGTTGAGGACTTTTGAAGACGGTGTATGTTCTTCTTGCTGTTTGATAACTCAAGAGTGGATGATTTGCTGGTATTTCGATTCGGCAGATTTGCGTATCTGGGGAGATGCGAGTGGGTTGTACAGTACAATCGATGCTAAGGAGTGGTCGGAGTGTCCGTATCTTGGGATGCGAAGTCCATTCTCGCG # Right flank : TACAGGATTAGCCGGTGTCCCAAATGCGGGGCAAGGTCAAGGCGAAGTGGGAGGAGCAGCATTATCTAGCTGCTTTGGTTTTTCGGCGCGGGGGACGCAGGTGCAAGCCGCATACTCTCGCGTTGAAGTCGAAGCCCGCAGTGGCGTGGGAGTGGCCGAAAGGCATGATGCTCGCCGCCGCGATTCGACGTTGGAATGCGAAGTGCAAAGGGTGATGGGCGGCTGGCGTGACAAGGCCGCTTGCCGGTACATGGACCCTGACTTGTTCTTCCCCGCCACGCGTCAGGAGGAACGATTGGCGCTCAAGGCCTGCTCCACGTGCCCGTCGATACGCGAATGCGCACGGTACGCGGCGGAACATGCACGGATAAACGGCTACCCGTTGCAAGGCGTATGGGGCTGGATAAACAGAAGCAAAGACAAGAACAAGATCGGCTGGCAGGAAAGAGCAACCATGAGCATTACGAACAACCAGCGTGAGCTGATACTCAAATGGCACA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCTCACGGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-24] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //