Array 1 58381-57741 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAX01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B1186 NODE_1_length_393282_cov_104.165452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 58380 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 58319 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 58258 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 58197 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 58136 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 58075 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 58014 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 57953 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 57892 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 57831 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 57770 29 96.6 0 A............................ | A [57743] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76127-74513 **** Predicted by CRISPRDetect 2.4 *** >NZ_WSAX01000001.1 Salmonella enterica subsp. enterica serovar Typhimurium strain B1186 NODE_1_length_393282_cov_104.165452, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 76126 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 76065 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 76004 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 75943 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 75882 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 75821 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 75760 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 75699 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 75638 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 75577 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 75516 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 75455 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 75394 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 75333 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 75272 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 75211 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 75150 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 75089 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 75028 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 74967 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 74906 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 74845 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 74784 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 74723 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 74662 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 74601 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 74540 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //