Array 1 68-522 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBR010000155.1 Salmonella enterica isolate 9063_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 68 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 129 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 190 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 251 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 312 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 373 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 434 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 495 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACAATAACATAATGATTGATATTGAAGCATTAGACGGTTTATCCCCGCTGGCGCGGGGAACACTCGTG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 16792-18896 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBR010000155.1 Salmonella enterica isolate 9063_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 16792 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 16853 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 16914 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 16975 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 17036 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 17097 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 17158 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 17219 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 17280 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 17341 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 17402 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 17463 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 17524 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 17585 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 17646 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 17707 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 17768 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 17829 29 96.6 32 .............T............... AAAATGAACTCACCGCCTACAAAGACCAGTTG 17890 29 96.6 32 .............T............... CCAATACGTATACTGACAACAGTATTACTGAC 17951 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 18012 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 18073 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 18135 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 18196 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 18257 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 18318 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 18379 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 18440 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 18501 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 18562 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 18623 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 18684 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 18745 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 18806 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 18867 29 93.1 0 A...........T................ | A [18893] ========== ====== ====== ====== ============================= ================================= ================== 35 29 98.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.99, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 719-19 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAIZBR010000009.1 Salmonella enterica isolate 9063_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 718 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 657 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 596 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 535 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 474 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 413 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 352 29 100.0 32 ............................. TTAATTAATCATTTTGTTTAAATCCCGGATCA 291 29 100.0 32 ............................. TGTTCGCGAACTGTTCACAAAATTGATTAAAT 230 29 100.0 32 ............................. TACGGAAACATACGGCGCCCATTGCTTTTTCA 169 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 108 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 47 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTAATTAATCATTTTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //