Array 1 26310-25242 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFC01000002.1 Escherichia coli strain 99-K118-A entry2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 26309 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 26248 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 26187 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 26126 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 26065 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 26004 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 25943 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 25882 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 25821 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 25759 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 25698 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 25637 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 25576 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 25515 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 25453 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 25392 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 25331 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 25270 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1134-68 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIFC01000174.1 Escherichia coli strain 99-K118-A entry174, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1133 29 100.0 32 ............................. TTGCCCGGCGCACAGGTGCACATCCCGGAAAA 1072 29 100.0 32 ............................. CCTCAACTGGCGTTTGAGTTGTAGATGTCTGA 1011 29 100.0 32 ............................. CTGCCGACAAATCCCTGCTCGTTGGCTACTCG 950 29 100.0 32 ............................. TGAGCAGATGCATATAGCGCCCGGGGTGTATG 889 29 100.0 32 ............................. CTTTCGCGCATATGCTCGATCACATAACCGAA 828 29 100.0 32 ............................. TGAGAAAGAATTATTCTCTGACATGGGGCCGC 767 29 100.0 32 ............................. GCCAATGATCCCTACTCGTACCCCCAAACGGG 706 29 100.0 32 ............................. GAGACGGAAATCGCGGTTGATAACGCTGATAT 645 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 584 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 523 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 462 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 401 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 340 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 279 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 218 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 157 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 96 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //