Array 1 2170-77 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMSA010000016.1 Bifidobacterium longum strain 1001302B_160321_G1 NODE_16_length_36426_cov_76.6195, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 2169 36 100.0 28 .................................... GCGGTTTGAGCAACGGCACCGTGCTTCA 2105 36 100.0 29 .................................... TGTACGGATATATGGCGGTTGCCGCCACA 2040 36 100.0 28 .................................... TGAGCGACAAGCTGTGGACGTACCTCCA 1976 36 100.0 28 .................................... CGTGGCTCGGCGTGTCGCCTGTGAGGCT 1912 36 100.0 29 .................................... CAGGGACGGCGGGAGTTCCCGTTGGGATT 1847 36 100.0 28 .................................... CGAAATCGCGAAACTGGTCGTTGGCGTC 1783 36 100.0 29 .................................... GTGAGCTTGTCCGTGTCTTTCATCAGTGG 1718 36 100.0 28 .................................... TGTTTACGCTCAAAAAGCACATTAGATT 1654 36 100.0 28 .................................... CCGAGGCCGGTAGGGTTGCGTGTCTGGT 1590 36 100.0 28 .................................... GTTGTAATCGGTCATAATAGTTTTCAAT 1526 36 100.0 28 .................................... TCTCCCAGTTGCTGCCCCTTGGCGTCGA 1462 36 100.0 28 .................................... CGTATTCATCGTGGCCTCTTCGCGGTTT 1398 36 100.0 28 .................................... CGTACATGATGGGGTCCTTGACCTTGTA 1334 36 100.0 28 .................................... TTGGTGGTGTTGGGCGTCCGGCGCAGAA 1270 36 100.0 28 .................................... AGGTCGAGCGCCTCCTGCCATCCGGCCT 1206 36 100.0 28 .................................... ACAGTATTATTGTCCTGATATTCATGTC 1142 36 100.0 29 .................................... TCGTCGTCCATCTCTGTACCTCGGTTTCT 1077 36 100.0 28 .................................... TCCATGACCGCGTCCATCACCTCATGCC 1013 36 100.0 28 .................................... CGTTCCCCAGTGGGGTGAGTGTGATGCC 949 36 100.0 29 .................................... ACCGATTGCAACGCGAATATCCCGGGTAT 884 36 100.0 28 .................................... TCCTGCAACTCCTCCTTGCGGGCCTTCA 820 36 100.0 28 .................................... GTTGTTCCGGGAACAACTGGGAACAACT 756 36 100.0 28 .................................... CTTGCCTCCGTTCTGCATCCAGCTGTCG 692 36 100.0 29 .................................... ACGCGGCGAAGAATCTTGTTATCGCGGCT 627 36 100.0 29 .................................... GTCGCACGTGGCATGGCATGTTGGCGAAC 562 36 100.0 29 .................................... TGTTGAGGGGAACCGTATCAAACCTGATT 497 36 100.0 28 .................................... TGGTTTCCGTGCCGCATTGGTCGCAGTA 433 36 100.0 29 .................................... TCATGGGACTGTGAGCGGCGGCGGCGTGA 368 36 100.0 28 .................................... TAGAAGTGCAGATTCCGTTCCTGCAAAC 304 36 100.0 28 .................................... AGGACGTGCAACGCAAGTATTTCAAGAT 240 36 100.0 28 .................................... TCGTCGATGTGTTCCAAGAGGTTTGGTG 176 36 100.0 28 .................................... TATTGTTCGGGTGCGATGGTGATGATCA 112 36 88.9 0 ..............................TTG.A. | ========== ====== ====== ====== ==================================== ============================= ================== 33 36 99.7 28 CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Left flank : ATTCAACGGTTCCGGTTTGACTATACCGAGCTCATTGAATGATTTTGCGCAGCAATTTGGTTTATATTGCGAAGGCAAAATCGACAGGTTGCAGGTTCCCGAATATGTAGGCGAGTCATGAAACGCGATGAGGACAGTGGCGGCATGTGGTGCTTGGTGATGTTTGATTTGCCGGTCAAGACAAAACGGCAACGGCATGCTGCAACTGTCTTTAGAAATATGTTGCTCGACATGGGATATGGAATGGTGCAGTATTCCGTATATGTGCGGTATACGCCTACGCAATCGGGTAATAGGGCGACGGTCAAAATGATTAAAGACAATCTGCCAGCTAATGGCTTAGTTAGAATTTTGCATATTAGCGATCATCAGTGGTCCACGGCGGCCCGATTTTCTTCTGGAAAACGTGAGATTGAGGAAGAAACGCCTGACTTTCTCACGCTTTTTTGAACGTAGGAGAGTCTGAAAAGATTGAAAAATAGCCCTTCTTGATAGGCTAT # Right flank : CCCGTTGTCTAAATGAAAGTGCAACACCCGTTAGATTGGAAATTGCCTAGAAAACCAGTCCGAAGGGATGTCGCACC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGCTTATCAAGAAGGGTGAATGCTAATTCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.30,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //