Array 1 1215710-1216119 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070379.1 Streptomyces tsukubensis strain L20 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 1215710 28 100.0 33 ............................ CAACGCCACCGCGGCCATTACTGCGTACCTGGC 1215771 28 100.0 49 ............................ CTGCGGACCTGCGGACCTGCGGACCTGCGGATCCAGCGGCTCGTCTCCT 1215848 28 100.0 33 ............................ ACGGTGTGATGGACCATCACTCCGTGCACCGGG 1215909 28 100.0 33 ............................ CCGCGGGCGACCCGCCGCCCGAGGCCGGGACGC 1215970 28 96.4 33 ...........A................ TCGCACTCAGCCTGAGGCGGGGAGGCCGGAAGC 1216031 28 92.9 33 ...........AC............... CGATTCAAGGGCGGGCAGGTCGATGTCGCCCCA 1216092 28 92.9 0 ...........A........A....... | ========== ====== ====== ====== ============================ ================================================= ================== 7 28 97.5 36 GTGCTCCCCGCGGGCGCGGGGATGGTCC # Left flank : CCAGCGCGCCCGATTCCACGACGAGATCGACGATCCGCCGCCCGGAGAACGTCTCGCGAACCCCCTCCGCCCCCGCCAGCGCGACGGCCTGCCCGCCCCCACCGGCAACGGCGGCGAGAACGAGGGAACCCCGCAGCAGGAGCCGCCGCCCGGGATCCGACGGAAGGAGAGTCATGAGGCCACCTCGTCTCGGCCGCCCGGGGAATCCCGGGCACCTTCGGTTCACTGCCGAGTGTGGTGCTGCGGGGGGAGCACGGGGATCCGTCACACCCCTGACCGCCCCCGGAGTTCACCCCCTGAGGGGCATCGGGGGAGATGAAGCCGCGGAGGTACGGAACGCTCCGCCCGGCAGGGGAGGCCCTCGTATGATCGCCGGGGTGGGGCGCGGCCGGGAGGAGGGGGACTTGGGCAAGCTGATGTACCTTCAGCCAGTTTTGCCGGAGTCGGTGAAGTTGTATGGGAGGGGCGCTGAGCGCTGCCAAAGGGGCAGGTCAGGGAGT # Right flank : CCCAGTTCGACCTGGTGCGCGGCCTGACCGACTAGTACTCCCTGCTACCCGCAGGGATCCCCGCGCCGCCCCCACAACCCCCACCCCCAAGCGGTAGCGTCTCCGTGCCGCCCACGGCCACCTGGGCGGCGCGCGTGTGTTCAATCCGCCGTGATCCCCCCGTGCAGGAGACCCCGTGGACCGAGTCAGAACCCGACGCACGCCCCTCCTGATCGCCACCCTCGCCACCCTCTCCGCCCTCACCGCCGGGACCTTGTCCCCGGCCACCGCCGCCCCGGCCCCGCCCGCGCCCACCACCGAGGCCCTGCGGCCCGTCTCGCCCCCGCCCGCGAGCAACTCCGTCTCGACCGCGCCCGTCACCGCCGACGGCGACGGCATCGAGACCGCGCGCACCTCCCGGCCCGTCGCACCCGGCATGACCCTCACCTCCTACGACCGCCTCGAAGCCGACAAATGGCTCCGCGTCGACACCCTCTCCGTCGAACTCGACGGCCACGGCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGGCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1223848-1224668 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070379.1 Streptomyces tsukubensis strain L20 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1223848 29 100.0 32 ............................. TCCCCCTCCCCGCTCGGGACACCAACGGCAAG 1223909 29 100.0 32 ............................. TTCGGCCGTAAAGGGCATTTGTTCCTGACGTC 1223970 29 100.0 32 ............................. ACGGTGGTGGCCTCCCGGCCGGGCGGCGCGAC 1224031 29 100.0 32 ............................. AGCGGGACCAGCCTCCGAGATGCCGTGGACCG 1224092 29 100.0 32 ............................. CGGCCCCGGGCGAACCCCGGCGTCGCGGTGGG 1224153 29 96.6 32 .................C........... CCGGTCGCGCCGGGGAGACTCGTCGGGGTGCT 1224214 29 100.0 32 ............................. CGGCCGCGCCGGAGGGCGCGGCATTTGGCGCT C [1224223] 1224276 29 100.0 32 ............................. CTGGGCGGCGACCGGCTGACCGCCGGGACGCA 1224337 29 100.0 32 ............................. AAGTTGACCGAGTGCGTCATGATGGAGGCATG 1224398 29 96.6 32 ............G................ CAGATGCCCCGCCCGGCCCCGGAGGCCGAGGT 1224459 29 82.8 28 .........A...A.......TC.C.... ACTCCCGTCCCAGCCGGGAGACGAACTT 1224516 29 82.8 32 .C.......A.G.A..........T.... GAGGGTCGCCTCCCCACGCCCACCATGGCGGT 1224577 29 75.9 32 ...T............T.......CCAGG CCGGACGAGCCCAGCGCCACCACGGCCACCAA 1224638 29 82.8 0 ...T.T.......A........CA..... | TT [1224659] ========== ====== ====== ====== ============================= ================================ ================== 14 29 94.1 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : AGTACAGCGAAGACGCCTACGGCTACACGTGGCTGCTGCTGCGCCGCGCCCCGGATGACGTGGCGTCCCTGGTGAACGACCTCCATGCGGTGAACACCCTGCTGGAGGAGTCGGGCTTCGGCCCCCACCTGCTGTGCTCCCTGATCACGTTCCACACCCCGGAAGCCCGCGCGCTGGCGCTGGTGTACCTGTACAAGAGGGGCACGTTCTACCCGTTCGCCCCGATCCCGGGCGGCGGTGAACGAAGGGACAACGCGCTGGAGTTGGAGGTGAGGTCGCTGCTGTCGGAGGATTTGAGGATGGAGGGGGAGCTGAACAGATGGTTTCCGGTGTGGGGGGCGCCGGGGTTGGAGGGGTGAGGGGTGTGGGGGTTTGTATGATCGGCGCGTTCTGGAGGAGGGGGAGCAGGACTTGGAGGCGTGCCCTATGTCGCTGATGTCGGAGTCGCTGAAGTTGCTTCGAAACGGCCTTGAGCGCTGACAAAGTGCCAGGTCGGGAAG # Right flank : CCGGCAGGAGTTCCGTCCTGCTCCTGCATCACTACCCGGGACCGAAGTCATCCCTGTACTCACGCGGGGATCTCCCGGGTACCGTTCGTAAGGGACGATTGAGAATCAGGAGACTGGTATGGCGCGTTGGAGTGATTACACCACCGGTCAGCGCATCAAGATCCTCCGAGGAAAGACCCTCCGGCAAACCGACCTTGCCGAGTTGACGGGGCTGTCGCTCCCCACGGTGCAGCAGGCAGAACAAGACAAGCGACTAACTCTGCAGACTCTCCTCCTGATCGCCAACGCCCTGGGTACGGATACCTCGGTACTGCTCGGCCAGCAGGGCCCTCGCAGGGGAATGGAGCAGGATGATCGTGCAACGGTCAAAGCCCTCGCACGTGCGGTGCACGACACTTCCGCTGGCCTTTTCCCCGACAACGTCACGGCACCACCGCTCCCCGGACTCGCAGAGACCGCGAAGCAGTGCTGGGATCTCTATTGGGACGGAAAGTACGTGG # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-25] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1229141-1230881 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070379.1 Streptomyces tsukubensis strain L20 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1229141 29 100.0 32 ............................. TCCGGTGATCCGCATGACTGGCGGTCTGGCCG 1229202 29 100.0 32 ............................. CGGCCTGCGTCACACAAAACCGCAGGTCAAAG 1229263 29 100.0 33 ............................. CAGCGGGAGAAGGGAGGGGACTCGATGTGCTTG 1229325 29 100.0 32 ............................. CTGGCCGAGCAGCCCGCCCCGGCGCCGGTCTG 1229386 29 100.0 32 ............................. CCGGCCCTGACCGCTGAGCAGGCCCCCGGGAT 1229447 29 100.0 32 ............................. CCCGCCGACCTCCCCGCCTCCTGGTCCGGCGA 1229508 29 100.0 32 ............................. GAGTGGCTCCAGCTCCACACCGCCGAAGTCCT 1229569 29 100.0 32 ............................. CCGAGGTCCGCCAGGCGGCTCTTGCTGCCGCC 1229630 29 100.0 32 ............................. GCCCAGCGCGGGGCCGTCTTCGGGACGACCGG 1229691 29 96.6 32 ............................T CCGAGTAGTGGTCGGGGTCGATCGTCACAATC 1229752 29 100.0 32 ............................. CGGCCGGAGCCCAGCCGGTCGTCGGACGGTCG 1229813 29 100.0 32 ............................. AAGGCGACGGGTGAGCGTGCGATGGACCGGGA 1229874 29 100.0 32 ............................. AAGGCGACGGGTGAGCGTGCGATGGACCGGGA 1229935 29 100.0 32 ............................. GCTGGATGGCGCCGCATCGGCGGTGCCCTGCG 1229996 29 100.0 32 ............................. GGCCGCCCCCTCGACTCCCGCGGTCTGTCCAA 1230057 29 100.0 33 ............................. GACGATGTTCGAAGCCGGGGACGAAGTAGAGAT 1230119 29 100.0 32 ............................. GGTGTTGACGTTGGTCGACTGGCGAAGGCTCC 1230180 29 100.0 32 ............................. TGCCCACACTTGAGGTAAGCAAGCTCGTGGGG C [1230189] 1230242 29 96.6 32 ...............T............. TACATACGCGACGGCGGCCGGGGCGGCTGGCG 1230303 29 100.0 32 ............................. CGTGCGGGGGATGTCCGACCCCGGGCGTACGG 1230364 29 100.0 32 ............................. CATCCCCGCTTCCGCCACCGAGACGACGCAGG A [1230386] 1230426 29 100.0 32 ............................. GTAGCCGTCCATGTAGCCTGCCCTGCCCGTGC 1230487 29 100.0 32 ............................. GGCGGTCAGGTGCGGTCGGGGAATCCGATGCT 1230548 29 100.0 32 ............................. CGGCCCCCGGCCTTCCGGCCTCGGAGCCGTCC 1230609 29 100.0 32 ............................. GTGAACGCCGCCGTCTGGCCGTCGTTCTCCAG 1230670 29 100.0 32 ............................. GCGGTGTTCACGTCGATCCCGACCACGAACCG 1230731 29 100.0 32 ............................. CCGAGCTTCAGCCTCTTCATACGGCCCGAGCT 1230792 29 100.0 32 ............................. AAGTCCTCGCCGCCCGCGAAGAAGCCGTCCGC 1230853 29 86.2 0 .....................GA..G..T | ========== ====== ====== ====== ============================= ================================= ================== 29 29 99.3 32 GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Left flank : GGGGAGTCCCCGGAGGAGGCGGCGGTCCGGGAGACCCGGGAGGAAGCCGGCCTGACGGTCACCGGCCGGGCACGGATCGGATCCCGTACCCACCCCCTGACCGGCCGCCACATTCTCTACATCGCCTGCACCACCGCATCCGGCACCGCCCATGTCACCGCGCCACGGGAGATCACCCACACCCGGTGGATCCCACCCCAACTGCTCGATACCTATGCCCCCGGTACGTACGAACCAGTCCGCCACCACCTCGGACTCCACACCTGACGAACGGACACCCCACACCCCGCTATGGGCCTCTGTCTGGCCGTGCATCTCGGGTGGTTCAGTGAGGAAGGGTGTGCGAGGGAGGAGTGGTGCGCGGCGGGCCTTTGTATGATCGGCGCGTTCCGCTGAAGGGGGAGCAGGACTTGGAGCCGTGCCCTATGTCGCTTATGTCGGAGTCGCTGAAGTTGCTTCGAAACGGCTTTGAGCGCTGACAAAGTGCCAGGTCAGGAAGT # Right flank : TGCTGTTCATCCTCGGCGCCAACGCGCTGTGGTCACGCGCAGGCAAAGACACCGCGCCCGACGCCTGGCGGCGTGGGGTCGCCTTCATACTCGATGGCCTGCGGGCTGGCTCGGCCCACCCGCTTCCCGTTGCTCCGCTGACGCCGCAACAGCTCTACGAGATCATGGGCGGCATCATCGGCACACGGCCAGGCACCGGCCAGTAGGGGCGTGCCCGTCAGGCCGCGAACTCTCGGTCTCGTTGGTTGGCGGCCCGATGCCCCTACTAGGCTCGGCCTGCATGACTCACACCGAGATGACGATCACCGCCGAGCTGATTCGGGACCTCCTGCGCGACCAGCACCCCGACCTGGCCGAACGGCCTATCGAGCTCGGCGCGCGCGGCTGGGACAACCAACTCTGGCGGCTCGGCGACGACCTCGCCGTACGGCTGCCCTGGGCGACCGAGTCCGCGGACGGACTTTTGCGCAAGGAACACACCTGGTTGCCCGCACTCGCCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCCCGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1232256-1233136 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070379.1 Streptomyces tsukubensis strain L20 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1232256 29 100.0 32 ............................. CATTCGAGAAACGGCGGCGCCCCCTTCCCCTT 1232317 29 100.0 32 ............................. GGAGTCGAGAGCGCGCCCATGCCCATCGGTGT 1232378 29 100.0 32 ............................. AGTCCCGCCCGGCGTCGGCCGGGCGGGACCTG 1232439 29 100.0 32 ............................. TCCCCCTCCCCGCTCGGGACACCAACGGCAAG 1232500 29 100.0 32 ............................. CAGTTGATGGAGCAGTACGACGGGGTGGCGAA 1232561 29 100.0 32 ............................. CCGCCGTAGTCCTTCGCGTTCAGCGACCGGGG 1232622 29 100.0 32 ............................. GGGGCGACCCGCGACCAAGGCACCCTGGCCAA 1232683 29 100.0 32 ............................. CGCTCCATCGACGCCAGCGGCGACGAAGTCGG 1232744 29 100.0 32 ............................. CCTCGTTGAGCCCTCAGCCGTCGAGCCGGAGA 1232805 29 100.0 32 ............................. GGCGGCGCCGGAGCGGAGGCGGCGCCAGGCGG 1232866 29 100.0 32 ............................. ACTGCCGAGGAGGCACCGGATGAGCGCCACGC 1232927 29 100.0 32 ............................. CGGCCAAGTTCAGGCCCGCAACGAACCTCCCT 1232988 29 100.0 32 ............................. CACGGCTCGCCGTCGACGGACGCGACCCGGAC 1233049 29 96.6 32 ...........C................. TGGCCCACCCCGGCCTCTTCAGCGGCCACGGC 1233110 27 86.2 0 ..........--..........C.T.... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.9 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : ACCCCGCGAACGTCCTGACTGCGGACGGAACCTTCTGCGGCGTGATCGACTTCGGTGACCTCTGTGCGGGCGACCCGGCCGGGGATCTTGCCGCAGCGTGGATCCTGCTCCCGGATGATGCCTTCGACCGCTTCCATGCTGCCTACCGGCCCACCCTGGACGCGGCGACCCTGCGACGTGCCCGTGGTTGCGCGGTGATGCGTGCCCTCTCCGGCATCCTCATCGGAGACGCCGGCGTCCACGGCCGTCCCGGCGGCAAGGCCACGTGGGGCCCGCCTGCCCGCACCTCTCTGGAGCGCCTCCTCGCGACGGCCCACCGCTGAGAAGTGTGGGTGCGCAGGTACCGCAGCGGAGATAGGAGAATGCGGGGCTTTGTATGATCGGCGCGGTCCGCTGAAGGGGAAGGGAAGTTGCTGATGCGCTCTATGTCGCCTATGCCGGAGTCGGTGAAGTTGCATCAGGAGCGCGTTGAGCGCTGACAAAGGACCAGTTCAGCGAGT # Right flank : CACCCCATGCCATGGAACCCCGGGCGATTCCAAAGACGTCGACGCCGTGGCCCCTCAGACGGCCACGAGCCCGCAGACCGCATAATCGAACTCCCATTCCTCACCCCCTCCACAGTTCACCTCGGGTGCGCGCCCACCGCCATCCGTTCCGTTATTCTGGGCCCGCCGCGGTGGCCATCATCCGCACCCGCTCAAGTAAATCGCTCAAGTAAACGAAAATATGATTTTGGGCCGTCAATTCCTGAGGGGCGACTTGCTACCCGACCACCACCTGCCCCGCCCCGACGGTCACGGCGTCCGCCTGCCCCTGTCGTCAAGCCAGCGCGAGATCTGGTTCGCCCAGCTCAGGAACGGGAACAGCGCCGCCTACCGGATCGGCGAGTATCTCGAAATCCACGGGCCCGTACAGGCGCGGTTACTGGACGCCGCGCTCCGCAGAGCCGTAGCGGAATCCGAACCGCTCAATGTTCGATTCGGGACCGAAGCCGGGGTGCCGTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1289817-1290388 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070379.1 Streptomyces tsukubensis strain L20 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 1289817 30 100.0 31 .............................. CCGGACGTGCGTCTCGTACTTGGCGTACGTC 1289878 30 96.7 31 .............................A TGACCATCGACCCCGACACCATCCCCGCCAC 1289939 28 93.3 31 ............--................ TCCGGACCTCGTCGAGGTCCCAAGGGTTCCG 1289998 28 90.0 31 ............--...............T TCGACGGCAAGGCCGCCCGGGACGGGATGCT 1290057 30 96.7 31 .............A................ ACGTCCGGAAGGAGCTCGTGGACGTCGCCGT 1290118 30 96.7 31 .....G........................ GGCGGTGTCTCACCGGGCGCCGATGCCGCGG 1290179 30 76.7 31 ......G....CCC.......C...C...T GGATGCCGCTCCTGGTCGGGACGCCCGCCCA 1290240 30 86.7 31 T..........CCC................ ACATTGCGGCACTCCGGGGCGCACGGCTCGT 1290301 29 90.0 31 ...T........C-................ GCGCACCTCTGCCGTTCGGTCACGGGGCTTG 1290361 28 83.3 0 ...........CC-.......C...-.... | ========== ====== ====== ====== ============================== =============================== ================== 10 30 91.0 31 GTGCTCCCCGCGGGCGCGGGGATGGTCCCG # Left flank : CCTTGCCGATGTCGTGTACGGCGGCCAGCCAGACGGTCAGCAGCCGGGCGTCGTCCGCGCCGCCGGGCAGGGCGTCACCGACCAGTTTCCGGACGTTGGCGGGCAGCCAGTGGTCCCAGAGCAGCCCGGCGACGGCGGCGCTGTCGGCCATGTGCCGCCAGAGCGGCAGCCAGCCTTCGGTGTCCCGATCGTGCTTCGCCCATACGGACCGCACCGGTCCGGTAAGGCGCTCCCCAAGACCCATGCGTGTCTTTCCCGTTGAGTGCTGTGCGAGTGCTCAGGGAGATACCTACCGTCAAAGCGGTGGCCATGGCAGCAGATCGGAAAAGATGAGCGCGTTTGTGGCTGATCCGCTGGAATCGGGGAATGGAGACGCGCGCCACGTCTAGGATGCGAGCCCGCGCTGCCGGGTGGGTGGGGGTGTCTGGGTGGAGATGTCGGGTGCGGTGAAGTTGATGGGAAGTGGGTGGGGCGGGGGGTAAGGGCGCAGGTCAGGGAGT # Right flank : GCTCGGGACGATCGGCGCCGGCACCCGGCGTCACCGCTCCCCGCCCCCCGCGGGGCTCCCGCCCCGGAGGCGGTCGATCAGGGGTGAACTCCCCCTCCCCGTACGGCCGTACGGGCTCCGCCCGGCTCCTCCTGCGCCACGGACCCCGATTCGTGCGCCGACGGCTTCGGGGGCCTAAGCTCTGCCGTGTGCTCGACGTGAGGCGTATGTGGGTGCTCTGCGCTGTGGTCGCAGGAGGATCGGTCACCGCGGCGGCCGCCCGGCTGGGGTACACGCCGTCCGCCGTCAGCCAGCAGGTGGCGGCGCTGGAGCGGCAGACCGGGACGGCCCTGCTGGAGCGGGTCGGACGTGGGGTGCGGCCCACCGCCGCCGGGCGGTTGCTCGCCGAGCACGCCGTGCTCATCGGGCGGCAGATCGCCGAGGCGGAGACCGCGCTCGCAGATCTGTGCGCCGGACGGACCGGACGGCTCGTCGTGCGGTACGCGCCCGGTTCCGGCGCC # Questionable array : NO Score: 3.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGGGCGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [33.3-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 1882862-1882652 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070379.1 Streptomyces tsukubensis strain L20 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1882861 28 100.0 33 ............................ GCCAACGCGATGGTCTCGTGGCTGAAGGGCCTG 1882800 28 100.0 33 ............................ TCTGGGCAGTTTTTGATGTGCGGATGGTGGGCG 1882739 28 100.0 32 ............................ CAGGTGGCCGACTTCCAGGCCACGACCGCGAA 1882679 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 GTCCTCCCCACCGCGTGGGGGTGTTCCG # Left flank : AAACCCCGATACCTTCCCGATATCGTGCAGCCCGGCGCACAAGCCGACCAGGCTCCGCGCCCGCTCCGGCTCACCGGCCAGACCCAAGCCCCGCTCAATAGTCCTTCGCTGGCCGTCCGACAAGTAGACATCCCACAAATGCAGCGCCATGGCAGCGGCGTCAGCCAAGTGCCTGACAAGCGGGTATGGAGGCAGCCCCGGATCCAGCCCTCGCGACTTCGCCCAAATCGACTCATCCGCCACAGCCCTGGGCACACCCATTCCCGCACAACCCCTCACGCGATCGCCAGCCAATGAGTCAAGCAGACCGCACCGACAACGGGCCCCATCCACACCACAGACCGAAGCATTCCGCCCCTCACAGCACCCGCCATCACAACCACCAGCCCCCGCGATACCCCACGGGATCCGCAGCTACAGTGAGGAAACTGCATCCGGGAGGCACAATGCGATCAGCAAAGGCAAAGCAAAGCCACTCCTAACGTGCAGGTCAGAAAGGG # Right flank : TTTTCCTGCTGCTCTCCTCACCGCGTACGGACACGGACCAGCCCACACCGCACCCCCATCCTCTGCATAGAGCCAAGAGAGTGACGACGGGCAGCGGGATTCCCCTGGGACTTATCTGGGACTTCCGGCTGCATCAACGGCCATGACCATGAAACAACCGAAAGAACATTTGTGCAGGTCAGCTGCGCGGTACCAGCAAACACGGCAGGTCACAGACCTGACTGGTCTCTTCCGCGACAACTGATCAGGACGATCCGGCTCGGTGCACTACTCCTTGTCGCACCACCACCGCAGGAAGGGACGCAACCGCCTACGGCACTGAGGGAATGACGGCTACAGGCGCCCTTCACGCAGAGTGAAGACCCGGCTCGAACGACGGCCGGCACCGAACCCCGGCGCTCGCCTGAGCCCTCTTGCGCTTGACGCTCATATGACGCTCGTGACCCAGAATCCGCCGCAACCGCGCTCACCAAATAGCCTCTGACCTGCACTTATCTTCA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACCGCGTGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACCGCGTGGGGGTGTTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.50,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 3570605-3570998 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070379.1 Streptomyces tsukubensis strain L20 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3570605 29 100.0 32 ............................. ATCGTTGGCGAGTACGTGTTCGACCTCGTGGG 3570666 29 100.0 32 ............................. CGGCACCCCCCTGCGGGAGGTTGCTCTATGTG 3570727 29 100.0 32 ............................. CGTCACCATGTCCGTAGGAGACCACGGCGCCG 3570788 29 100.0 32 ............................. GCTATGCGCCTGTACCCGCGGTTCTTGATGAG 3570849 29 96.6 32 ..............C.............. GGCACCACGGAGATGCAGGGGATCCTCACGAC 3570910 29 86.2 32 ............TAC.........A.... GAGATCGCCGGACGGTACGGGCCGGAGAGTCT 3570971 28 89.7 0 .............AC..........-... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 96.1 32 GTGGTCCCCGCGCCTGCGGGGTTGGTCCC # Left flank : AGCGCTGGGGCTGCCGTCTGGAGTCCTATCTCACCGACCCCCGGGTGGAACCGGATATGAACAAGTGGCAGATCCAACTCGCCTTCCGCCTCGCCGACTGACCCCGGCACCCGGCCCGATCTCTTGGCCTCCGGCACGGGTCGGGGTCGGGGGCGAGGTCCGGCGTCCGGCGTCCGGCGTCCGGCGTCCGGGAGAACGCGAAGGACCCCCGTCCAGTCACTGGACGGGGGTCCTTCTTCACGTGGCGGCGCCAGGATTCGAACCTGGGTAGGCTAAGCCGACGGATTTACAGACCTCTGGCGCCTGCACTCGCAAGGCTCCCTTGAGCAGGCACTTTCCCGGGCACCCGGTGCTCCGGTTCCTGCTCCGTCCACACGTCGTCCTGATCATGCTCTCGGTCGCGCTCTGGACCGCAGGCTTCACGAGAGGGAGAAATGTCCGTTCTTGGCAAAGTGGGTAAAATCCAGGGTCGCGCCAACTAACGTCCCTGGTCAGCTCCT # Right flank : CGCACGCTTGCTCCCAGCACCAAGTCACCCAGGGACGATCCGGCTCGTGAAACCATCACCACGCAGCCGCTCGTACGCCTGCATCACGATGTCAGGCACTTCCTGCCTGATCATGAACCCCTGATCGGGGTAGATCAGCAACCTCTGAAGGGCTCCCACGAGCATGTCGATAACCAGGCGCTCATCCCCGATGGAGGCAAGGTAGTCCTCGAAGACCATCGGCGCGGACGCGCTGACGACGTCCACCTCGGGCCAGAGCTGGCGCGCCGTGGCATACGCGCGCCGCTCTTCGTACGGCTTGCTGACCAGCAGCACGGATGACACGTCAACACCGTTGTCTTCCAGCAAAGCCTTTGAGAATCGGATGTTCTCTCCAGAGTTGCGCGCCCGTGGTTCGACCAGCACGGAGGAGTCGGGCACACCAAGCTCAAGAGCGCGGTCTCGGTAGTGGACAGCTTCGCCCCGCGGCATACGCGCCGCCGTGGTGGGGCTGGTTGCTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCCTGCGGGGTTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 8 5646601-5645657 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070379.1 Streptomyces tsukubensis strain L20 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5646600 29 100.0 32 ............................. ACCGAGCAGAGGTACCCGGCTCACAAGGTCGT 5646539 29 100.0 32 ............................. CGGCCTGTCATGTCCCGGAGGCGGCCGTCCGC 5646478 29 100.0 32 ............................. GGTGGTGGTCGAACTGGAGCGAATGCGTGGGA 5646417 29 100.0 32 ............................. TCGCCCTCGAATTCCTCCAGGACGTCGCTGCC 5646356 29 100.0 32 ............................. CCCGTCTACACCGTCGTCGTTCTCGCCCTGGC 5646295 29 100.0 32 ............................. AACTCTGACGACTCGACCACGAAGAAGACCGC 5646234 29 100.0 32 ............................. ATCACCTATTGGGCGTTGTCGATCCGGTACCT 5646173 29 100.0 32 ............................. CGGAAACGGGTGTGCTGGGTCGGGCCCTCCGC 5646112 29 100.0 32 ............................. TGGGCAATCCACTGCGGGTGCTCCGCCCATTC 5646051 29 100.0 32 ............................. GATCTGGACCGGCTCCCGCTGGGAGAGGGAGG 5645990 29 100.0 32 ............................. CACCAATGGGTGGTGGCGGGCGGGGTGTCGGG 5645929 29 100.0 32 ............................. CCGCGGTTGTCACCGCTCGGCCCCGCTCATCT 5645868 29 100.0 32 ............................. TGCATCGGCTGGGCGTCGACCTCGGCCCAGGT 5645807 29 100.0 32 ............................. GACCTTGAGGAGTACGGCGCCCTCGTCCGCAA 5645746 29 96.6 32 ...................A......... GGCGGACGCGGGTCATCAGGGTCAAGGCTCAT 5645685 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.8 32 GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GCGCCAGGGCGCCCGAGTCAAGGAGCTTGCGATACACCTCGTCCCGCGCGGAACCGTCCAGGCCGGAGGCAGTCACTTCCGATGCTTGCCGTCCCCTTCGGGAGCGCTTCCATCGGGGCTGGGCGGCTCCTGTGGCGGGGTCCACGGCTGGCCCGGGAGGTTTTCACCAGCGCCGCCGCCTTCTCCGCCGCCCCCGTCGCCCGCGTTGCGTGTGATCGGCTCGGCCATCGCGACCTCCAAGGCTGGCCGTAGGTAGTCAGCCTGGACTCTAGGGAAGTAGAGAGCATGCGAACAGCCCGAATTGGGCCGTTTGACGGATTCCCTCGGATGGGTGAGGAGGAACCGATATCGTCGGTGGCCGGAGCCGAGGGAGGGGGTTTGGTTTGCTGCACGATCCAGACCAACCAGAGCGGTTTTCGTCGTTTTCGACAGATTTGCCGGAGTCGGCAAAGTTGCGTGAGAACTGGTTCCCCGGCCGATGAAGCAGCAGGTCAGGAAGT # Right flank : GTCAACGCGACCTCGGCCGCGTGCGGGTAGCCGAAACACCCATCGGCGCATCGGCAGAACCGGAAATGCTCGGCGCTTCTCTGGCCGCACTGCTGCCCACTCGATTCTTGACAAGATCCGGTTCCGCCCCGGCGTCCAGATACGCGCTCTCACATGTACGACCTCGCCTGCGAGCCAGCCGTCGTTAGGCTCCACCCATGACCGACTACGTACAGGTTTCAACTGCAACACCCCTACGGGAACAGGCCGTCGAGCTTGCTCAAGGCGCGATCAAAGGACGTCTAGCAGCCGGCACCCAGGTCATTGGGCCTGTCGGCTCCGTGTTCTGGCACCTGGGGGAGTTTGGCGAAGGTACCGAATGGCGGCTTCTGCTCACCACGACGACGGACAGGTACCCCCAGCTTGAGCAGTACCTGTTGGAACACCACCCTTGGGACAACCCGGAGCTGCTCGCCACACCGATCGTCCGAGGTGCGCAACGGTGTTTGGAGTGGATTGAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 9 5650006-5649733 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP070379.1 Streptomyces tsukubensis strain L20 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5650005 29 100.0 32 ............................. GAGGTGGAGCTCTGGGCGCTGGCGCACGCTGG 5649944 29 100.0 32 ............................. CCGCCGAGCCGCGGGTAGCGGCGGCTGACCGA 5649883 29 100.0 32 ............................. CGGCGCACGTCAGACAGGGAGTAGTGGGGTCC 5649822 29 100.0 32 ............................. AGGACCGTGTGTCATGGTCGGTCGCCTTCGGA 5649761 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Left flank : GTCCCCGGTCGAGCGTCTGGGAGGTCTCCGCGGTCACGAGGCCCTCTCCTTCGGAGTGAGTGACGGCGAAGCCCCACGGTTGACGCGGCGCCGTCCCGCCGGCGACGCACCGAGGACCCGCCGGCAGGCCATGGCACACCGGATGGGCTCCGCGGCTTCGCTGCCACGGGGCGCAAGATTGGTGAGCGGGACAGTAGCGACCAGGTTCGCTCAGCGGAAGACCTCGTCCAGAATCCGGTCGGGGGTATACCAACGCGGCCCGTTTGATGGCTGTTTGCCGAGCCTTCACCACGACCCCCCGGAGACTCCCCTTCCGCATCGGCGGGCCCATTTCGGCGGTGGGGGGAGGGGCCGGTCAGTAGGGTCGGGGTGTGGTGGAGCGGAGGGGGGAGTCGAGGTGTGTCGACCGGTATGCGTTGCGATGGTTTGGCACGTTTCGCCGGAGTCGGTGAAGTTGCTTCAGAACGGCGCGGGCGGGTGAGAAAGCGGCAGGTCGGAGA # Right flank : GCCACGCCCACACCCATCGCCGTCCCGCCGCCAACGGAGGCGGCATCGGCCTCTCCCCCTGGGATGAGCCGTCCGGCGTGAGCTGTACTGATAGCCCTGGAGATACGAACCGCAACCGCAACCGCAAGCCGAGTCCGCCTCCCTGTTCAGCCGTTCCCATCTCAGGAGATCGGTTCCACGCCGTACAGTCGGACGCGTGCACTCAGCGGTGAACAGAGCCCACGCCGGGCTGGTTACGGTTACCGGAAGTTCGGGCCAAGTAGGAGCGGCCCTGGCTGAGGCACTGGACACGGCCGGCTGGGTGGTCCGCGGCGTGGACCGGATTCCCGGCCGCTGGACGAGCGTCGTCGGAGACCTGCGAAACCAGCCGGTGCGACTGGCCGCATTGCAGTCGGCCGATGCCCTGGTCCATAGTGCCGCGCTGCACGCCCCACATGTCGGCCGCCTGGCCGATGAAGAGTTCCGAGCCGTGAACGTAGATGCGACCGCGGGCCTGCTCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //