Array 1 2648-2140 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZIR01000042.1 Pseudomonas aeruginosa strain KCJ3K67 NODE_42_length_38470_cov_3.534543, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2647 28 100.0 32 ............................ ATAGGCATAACTCCCGTCTGGACCGCTAGAGA 2587 28 100.0 32 ............................ TGTCCGGGGAAGTAGATGAACGAGCCGCAGAC 2527 28 100.0 32 ............................ AGTCAGTCGAAGAGCCGGATTGGGCTGGTAGA 2467 28 100.0 32 ............................ GTAGCGCTTGCGGTCTGCCGGGTCGACCTCGG 2407 28 100.0 32 ............................ GAGCAGGCAGAGGCGGAGCGGCCGGAGGTTGT 2347 28 100.0 32 ............................ TCGGTGATGCCCCGGCGAACCGGGGCGGAATG 2287 28 100.0 32 ............................ ATCGACGCCGCCCTGGGCCGCCTGGTCGAGCC 2227 28 100.0 32 ............................ ATCGAGGCACTGGAAGCTGAAGAGTGGCTGGA 2167 28 92.9 0 ..G.....................A... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGGGCGCGCAACAACCGCTGCTGTCGGAAGAAATAGTGCGGGGCTAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGGCGGCAGGGAGACAGGCCGCTCGTGGGTATGAGGCCAGCAGGCTGTGGCCTGCCGGCGAGCGAGTCGCCGGCGGGAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGACTTGTACGAAGAGTCTGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGATTTCACTGCCACGTAGGTCGTAAAGCAGCCCTGAAGTATTGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCGTTCCCTGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGGATGCGTTTCCGAGCCTCCTCCTCACCCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAATCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCGCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 6978-6350 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZIR01000146.1 Pseudomonas aeruginosa strain KCJ3K67 NODE_146_length_15030_cov_3.967926, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 6977 28 100.0 32 ............................ CGCTCTATGCGTCGCAGCAGGTCCTCGGTGAC 6917 28 100.0 32 ............................ GTCAGCAGGCGCAGGAATAGCTTTCACCAGTT 6857 28 100.0 32 ............................ TGCGGGGCTGCTGGCAAGGTTGGAAGCTGCAC 6797 28 100.0 32 ............................ ATGACCCAAGCAAACAACGGAAAGATCACCAC 6737 28 100.0 32 ............................ TTCTTCCCGCGCTTGCTGTTGCGGAACTCCTC 6677 28 100.0 32 ............................ TGGGAGTGGCCGCGCATCAACGCCGGCTACTT 6617 28 100.0 32 ............................ GAAACCAGGGAGCCCATCTGATCGAGCCTCAG 6557 28 100.0 32 ............................ AGGATGTCGCCGTCCGTGACAGCAACTGCTAT 6497 28 100.0 33 ............................ TTCGAGGCGCTGTACGCATGCCAACAGTGGCTA 6436 28 96.4 32 .....T...................... CGTTGATCTAATGCGGATGCGGGTGGAAACAG 6376 27 78.6 0 ...........CGC.......C..-..G | ========== ====== ====== ====== ============================ ================================= ================== 11 28 97.7 32 GTGCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACCGCTTTCCGCGCAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCTAGTTGTTCGAGAGCGCGAAAGCGTGCCTGAAGTCGGCGATCAACGTCCTTGCCCTGACCTGCCTGCTCGACGAGAACGAAGAGCCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCACACCCACGCCAGTAGCGCCGTCCCAGACGCGACGCCCCCGGCCAAGCCGGGGGCTTTGATATGTGATCCATACGAGATCCATTCGCGCGCGAACGGCGAGGTTCATCGCCCGTATCGGCCGTCGCGAAATGGCCTCCAATGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTGACGCCCTTTAAAATCAACAACTTACAAACCATCGAAAAAAGAGGGTCTCAGACAGAGAAAAGCCTGTATTTCTTTTTCCTTCAATTGGTTATAGGTTTTCGGGGCTA # Right flank : CTTTCCCGCCCTACCCAATACCCAGCCAATATCAGGAAAGTCCTACCTCCTCCACCCTGCCCGCCCTGCTACCCTCACCCGGATGCAGCAATGCGCCACCACCTTGAAGCCCATGCCTCTCGTACAGACGAAAGCGGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGGTGCCCTGGTGCAGTATTCGACAGAACCGATAGGGACGGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGCACTGAAGACGATCCTTCATTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGCGTCGAGTACGTCACCGACGAAGGCCGGCACTCGCACTACTGGAACATCCCCATCGCCAATACCACCAGCCTTCTGCTGGGCACCGGCACCTCCATCACCCAGGCGGCCATGCGCGAACTGGCCAGGGCTGGGGTACTGGTGGGTTTCTGCGGTGGCGGCGGAACGCCGCTGTTCAGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 54933-54243 **** Predicted by CRISPRDetect 2.4 *** >NZ_VZIR01000015.1 Pseudomonas aeruginosa strain KCJ3K67 NODE_15_length_63421_cov_4.030603, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 54932 28 100.0 32 ............................ TTGCGATCAAGGGGCTGCAACACGGCCTTGCG 54872 28 100.0 32 ............................ AAGCTCACCGGCCCGGCGGAACTGCTCGCCGA 54812 28 100.0 32 ............................ ACAAGTAACCCACCCGAACCCATCAGGAGAGC 54752 28 100.0 32 ............................ CTGAACCCGATCCTTGAATGCGAGCTGCCGAT 54692 28 100.0 32 ............................ TTGACAACATGGCGGTGCTGGCGGAAACCGTT 54632 28 100.0 32 ............................ TTGGTCTCAATGATCATTTTCACGCGGCGGTC 54572 28 100.0 33 ............................ AGAATAACGCCCACCACTTGTGACAGGTAACGG 54511 28 100.0 32 ............................ AGAGGAAGCCGAATGCGCCCTTGGCGGTATCG 54451 28 100.0 32 ............................ GTGCGAGTTAGAACGAGCAGCCCCATTGCAGG 54391 28 100.0 32 ............................ ACGATGTTGAAGTAGCGCCGCTTCTGTTCTTC 54331 28 100.0 32 ............................ TGTACTGCCTTGAGTTTGACTCTAGAGTGGGC 54271 28 82.1 0 ......................G.CTTC | C [54246] ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.5 32 GTTCACTGCCGCATAGGCAGCTAAGAAA # Left flank : CCGCTTCCCGCACAACGCCACGCTGTACCTCGACACTCAGGCACCGCCCAGCCAGTTGTTCGAGAGCGCGAAAGCGCGCCTGAAGTCGGCGATCAACCTCCTCGCCATGACCTGCCTGCTCGACGAAAACGAAGAACCCGGCGAAACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGACGCGGCCCACCCACACCAGTAGCGCCCGGCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGAGGTGATCCCTTCGAGGCCCATTCGCACGCAAACGGCGAGGTCCGCCGCCCGTCCCGATCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAATAACTTACAAAGACATGAAAAAAGAGGGTTTCAGACCAGGAAAACCCGGTATTCCTTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CCTCGGACTCGCAAATGGACGCTGGAAGGCAAGAGACGATCACCGTGGAACGACTGGCAGACACTGCCGCCCACACCCGGCATTCCCCTGACGAAACGAATAGCCTGTCCGTTCCCGTAACGCCCCTGTCAACTTGCCCCGGTAAACCGGACCTTCGTGAAGCCTGCGGAGAACTCCGGAATGAGTGCAATGGACCTCAAGCGCCGCCGCGTCATGCAAGGCCTGGGCGCTGGGCTGCTGTTGCCGGCGCTGGGCGCGCCGGCGGTGATCGCCGCGCCGAATGCGCGGCCGAAGCTGACCGATGGCGTGCAGTCCGGTGACGTGCACGGCGACCGCGCGCTGGTCTGGAGCCGCACCGACCGTCCGGCACGGATGATCGTCGAGTGGGACACCCGCAGCGTCTTCAGCGAGCCGCGCCGGCTGGTCTCGCCGATCACCGACGAGCGTCTCGACTACACCGCGCGCATCGATCTGCGCGGTCTGCCGGCCGACCAGTCGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //