Array 1 16022-16177 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIG01000017.1 Streptomyces sp. NRRL F-2890 contig17.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================ ================== 16022 24 95.8 48 .................T...... CGCCAGCGAAGGGCACGACGGACTCTCTCAGACGGGCCGGCCTCCCCC 16094 24 100.0 36 ........................ GAGACTCCCCCGGCGCCAAGCAGCCCGGAGGCCTCA 16154 24 95.8 0 .....................T.. | ========== ====== ====== ====== ======================== ================================================ ================== 3 24 97.2 42 ACCGTTAACGCCGTTAACACCCCC # Left flank : TCGAGGAGACCGCAGCTTCCCTCAAGGAGAAGGGGCAGATCCAGCCCCTCGCTGTCGTACGGAAGGCCGCCTTCCTCGCGGTACACCCTGACCAGGCGGAGACGCTCGGCGCTGCCGAGTACGTGGTCATCGACGGCAACCGGCGTCTGGCAGCAGCCAGCATCGCAGGGCTGGCCGAACTGCGGATCGACGTCAACGACAGCCTGGCAGCCACCGCGGCCGACATGCTGGAGGGGGCCCTGATCGCGAACATCCACCGCGTCGACGTCCCCCCGCTCGACCAGGCCAAGGCCATCCAGGAGCTCGTGGACGTTCACGGCTCCCAGGCACAGGTGGCCAAGCGCCTCGGCAAGACACCGGCCTGGGTATCCCAGCGCCTCGCGCTCCTGGAACTGACCCCCGAACTGCAAAACAAGGTCGAGACAGGCGAGCTGAAGGTCGAGCCCGCACGCCGTATCGGCCGGCTGCCGAAGGAAGAACAGGCCGCCGCCGCCGAAGAA # Right flank : CCCCGGCGCCAAGCAGGTCGACGACACCGAGATCGATGCGGCAGGACTCCCCTGGAACGACCCCAACACCATGCACGAGATCCTGACGCGCCGGATGACGCCGGACGCGTTGACGCAGTTGGGCAAGCTGCTCCTGGAGCACTGACCCTGGGCCTCCCCGCACCGATGCCCGGGTGGTTCGTCGTCCGCTGACAACGAACCACCCGGGCATCTTCACGTGCGCGTTCGGTCGCGATGTGAATCAGTACCTGACCTCTGTCCCGGTGAAGAGGCCCCCGCTGATGAGGGGCCAGCTCAAGGAGCGGCCCGGGCGGCTCCTCTTAAAGAACCTCGCCCAGGCCCGCTGGCAGGCCGTGAACGCACCCCATCTCGTTGCTCTCGTTCGAGCCGGTGCCCGCTTCGAGCGCGGACACCTCGTCGAACGCCTCGAAGCCGGCGCGGCCTGAGCTGCCCAACAGATCGCGACAGGGGGCCGACGGCACTGGTCTGCCGGCCTGCTT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCGTTAACGCCGTTAACACCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 42960-40736 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIG01000015.1 Streptomyces sp. NRRL F-2890 contig15.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42959 29 100.0 32 ............................. GTTTCCGCACTGATCGTGTTCGCCGCGCTCGG 42898 29 96.6 32 ............................A CAGTCTCAGCAGTAGAGAGGTCCGCCCCGCCG 42837 29 100.0 32 ............................. GGCTACCGCCTGCACGGGTTCGGGGTGAAAAC 42776 29 100.0 32 ............................. TGCGCCGCCGGATACGGGCGGGTGGCCACTGA 42715 29 100.0 32 ............................. GAGAGCGGTCTGCTGGTCGGACGGCAGGGCAA 42654 29 100.0 32 ............................. ACGGCCGCGTGGCTGCCCGCGTTCTCCAACGT 42593 29 100.0 32 ............................. CCGTCGCGGGCCGGACGGCGCAGCGGGCGGCT 42532 29 100.0 32 ............................. GTGGTAGCGGGGTGTGGTGCTCTCGGTCTGTC 42471 29 100.0 32 ............................. CCGGAGACATCATGAGCCGCCGCCGCCTGACC 42410 29 100.0 32 ............................. CAGGTGGAGGGCCGCCTGTGGGATCACCGCGC 42349 29 100.0 32 ............................. GCCCGGTCACCGGGGACGGACCATCAACGCCG 42288 29 100.0 32 ............................. ACGGCGCCGAGCTGCCCGCGTGGTGGGCGGCG 42227 29 100.0 32 ............................. CCAGATGCCGGGCCCGGCCGCGATGATCCACA 42166 29 100.0 32 ............................. CCGACCCCGCCACCGAGCAGCGCGCCAATGGC 42105 29 100.0 31 ............................. TGCCGGATCGTGCGGGACCACTACTACTCGA 42045 29 100.0 32 ............................. GACACGGTGCGGACCACCTGAGTCACGATCAC 41984 29 100.0 32 ............................. AAGGCGACGGGCTTGCCCTGGTGGATCGCGGT 41923 29 100.0 32 ............................. GCCAGCACACCGCCGCAGAGGCCGCAAGCAGC 41862 29 100.0 32 ............................. GCCGACGCCTATGCCATCACCAAGCGGGCCCG 41801 29 100.0 32 ............................. TACCTCGTTGAGACGGCGCGCGATCGGCTCGC 41740 29 100.0 32 ............................. CCGCAGAGGAGACCGCGCCCGCGCCCGGCGAC 41679 29 100.0 32 ............................. AAACCCGGCTGCAACGGTCCCTCACTCTCCAG 41618 29 100.0 32 ............................. CGGTGAGCGGCCGGGACGCCGGCTTCCTTTTC 41557 29 100.0 32 ............................. CGTACCCGCACTTCTACCGGCGCTCGTCTGCG 41496 29 100.0 32 ............................. CACGGGCGCTGGGGCAGCAGGTGCGGCGACTG 41435 29 100.0 32 ............................. CTGACCGCAGCCCTCGACTCCCACTCCACCCA 41374 29 100.0 32 ............................. TCCGGGAACGGGCCGGTACCGACCTACTGCAA 41313 29 100.0 32 ............................. TGGGAGGTCCAGGTCGTTGCTTCCTTCCAGGG 41252 29 100.0 32 ............................. TGGCGTTCCTCGATGACGGGAGGGTGGCAATC 41191 29 100.0 32 ............................. GCGCCGCGTGGTGGCCGTACGGACGGCCGCCG 41130 29 100.0 32 ............................. GCCCACCTCCTGGCCGCCGCCGACGGCGAGAC 41069 29 100.0 32 ............................. AGGCGACCCCCGGCCGGCCCCTGATCACGGTG 41008 29 100.0 32 ............................. GAAGCCGGCACGGCCAACGCGCCGCTGCGCAC 40947 29 100.0 32 ............................. CCCACCTCCACACCGACCCCATCCCCCCCGGT 40886 29 100.0 32 ............................. CAGCGATGGACGCCCGCCGCCTCGGCGTCGGC 40825 29 100.0 32 ............................. GGCAGGTCCTTGACAAGGCTCGCGCTGGTGAG 40764 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 37 29 99.9 32 GTGCTCCCCGCGCAGGCGGGGGTGGACCG # Left flank : AAGGCGAGCCACCGGAGCCACACTGACGCCTCGCACCTCCACGTCCTTCACCTAGCGGCACCCTCGAACAGGAGCAGTGAACCGTGCCGTCCATGACTGTCCTCTACACCACAGCCGTTCCCGATCACGTCCGTGGTGCCCTCACCCGCTGGCTGACCGAACCGGCCCCTGGCCTCTACATCGGCACCCTGTCCGCCCGTGTCCGAGACGAGCTCTGGAAGGTCGTCAGCGCATCCATTGGCCCAGGAGCTGCGGTTCTGGTCCATCCCGACTCCAACGAGCAGGGTTACGCCCTCCGTACAGCAGGTGAACGCCGACGCACTCCATGGGACTTCGACGGCATGACGCTCGTTGCTTTCCGCCCCGAGGACTACCTCATGATGGACAGACCTTCACCGGAATTAGCTTCTGGTGCCGATCCTTCCGCCTCCAACAGGGAGACAGCGCCGGGTGATGGTCAAGAATTTGCAAAGTGGCTATAACGCCGCAGGTCAGAAAGA # Right flank : GAGGCTCCGGAGGTCCCACCATCGTCCATTCCCCGTTTCAGGTGCGGTCGCCGGCGACCTGGTCGATGTCTCCGTCACCGCGGGCGGTCTGCCGGATGTCTTCGTGGGCCGGGCGGCGGCTGCCGCGGATGGTGCACTGGCTGCCGGCGGTCTGCCGGATGTTTCTTCCGCGGCTGCGGGCGGTCTGCCGCACCCGACGAACCCCGCCGCCCGGACCTGGCGGACTGGCCTGGGTGGCCCACCAGCCCAACGCGGCCAGCACCCCGGTGGCAACAACGCCAGCCGCCGGGCCGATCACCTCCCACGGCGCGCGACCCCAGCCGGTGGCTGCGGCCCACGGAAGCGCCATTGCCCCGAACCCGGCGAGGGATCCGGTCACCGCCAGCATCCACCGCGCTCCAGCCCGTTCGAGCATCCCAACCCCCACACCAAATACGTCAGCTGACTCAAAAACAGACGATGCTCCCACACCCACCCGCGGCGCGCCGTCCAAGCGGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCAGGCGGGGGTGGACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.90,-13.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 53249-54497 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIG01000015.1 Streptomyces sp. NRRL F-2890 contig15.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 53249 29 100.0 32 ............................. CTCTCAGCGGTGGCGGAGAAAAATGGGCTGAT 53310 29 100.0 32 ............................. GGGACTCGGGCAGAGTCGGAGGTTGTGAAATA 53371 29 100.0 32 ............................. CCCTGATCCGGGTCTACCCCACCAACCCCCTC 53432 29 100.0 32 ............................. TCCCAGCACGATGCCCCCCGCACGAGCCTCGG 53493 29 100.0 32 ............................. CACGGGGCCTGGTCGGCCAAGCGCTACCAGGA 53554 29 100.0 32 ............................. GTCTATCCGGAGCCTTGGGGAATCCGGGTGGT 53615 29 100.0 32 ............................. ACTTTGACCAGGTCGGCATCACCGTCACCCGC 53676 29 100.0 32 ............................. CCGGGGCAGGACTACCTGCCAAGAGGCAAAGA 53737 29 100.0 32 ............................. GTCGTCGCTGCGTGGAACTGGCGCCGGGCGGC 53798 29 100.0 32 ............................. CCGTCTGACTGACCGTGTCCCCGTCGAACAGC 53859 29 100.0 32 ............................. TTGGCGTAGTCGTTCGGGGCGAACACCTCGGC 53920 29 100.0 32 ............................. TCCGTAGGAAGTCGTCCGCCTCGCGGCGGCCG 53981 29 100.0 32 ............................. CTGGGTGGCGGCCGACGGCGACAGGTAGATCA 54042 29 100.0 32 ............................. GACATCAGGGGGTCGAACAGATGTCAAGTCAT 54103 29 100.0 32 ............................. GCGACACGTACGAGCCTTTGCCCTGGCGAGTG 54164 29 100.0 32 ............................. TCCTGGCAGGCCGATTCCGGGATGTGGGCCTT 54225 29 96.6 32 ............................A ACGGCCAGAGCGTGCCCGAGGCGGACGGGAAC 54286 29 100.0 32 ............................. TATCTCGGGCCCGAGGGTCAAGAGGCCCACTT G [54308] 54348 29 100.0 32 ............................. TCGAGGTCGGGGTTGGGCAGGTCTACGCCCGC 54409 29 89.7 31 ...........T............CC... ACGCCCTGGAACCGACGACGGGAGCGCTCAG 54469 29 72.4 0 .C......T...GG.C.T.........GA | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.0 32 GTTCTCCCCGCGCAGGCGGGGGTGGTCCG # Left flank : GCAGCTCCGGCAGCGCTCTGTGCGTGGCGTACTCGTGCCGCATCCGGGAAGCGGCTCCGACTGCACCGCAGTCATGCCGGTAGGCCGGCTCCCCCAGGAGGGTCCTGTGTCCCGCCCTGTCCTTGAGGATCATGTTTTGGAACTGCGGAATGATCTTCCCCAGATCGTGAAGTCCAGCCCAGAACATCACGACCCGTCTAGCGTCCGCCACACTCGTACGTAACGCTCCAGCGATTCGTCCGCGTTGCTCGCCGGTCAACACCTCGTCCCAGACAGCCCCGCACACCATCGCCGTGTCGATCAGGTGCGCAACCAACGGGTACGGATCCGTCAACCCAGCGGATTTGCCAGTCAATCGAGTGTCAACCACGACTACCGCCTCCTCAAGTCCTTCTCAGCAGGCGGTACTTCATCACAAGCCTCTGACATCATGAGGCGTGCCATCGAACCCGGACATTCAAGTAATTGCAAAGCCCCTCTAACACCGCAGGTCAGGAAGT # Right flank : ATGCTAATGACGATCAGTGTGCGCAGGGCATCGCACAACGGATCAGTGGTGCAGTTGGTGGCCGGCTGCGGGGCCAGAACGGTGGCGGCGGCGTTCGGCTTCAGCGGGGTGACGGTTCCGCCATCTCCGATTGACTGGATGCGTCTAGCCGTACTGGACAGGCATGACGCTGCCGCTAGACCATGTGTCATGTTCTTCGAGAGAGTCTTCGACGAGCCAGAGTTGGCCGATGACCCGGACGAGTTCGTCGATCTGGTCGCCACCACCTATCCCGCCACCGCCACTCGCACTGGATCCACGTGGACGGTCACGATCCACGACCTTCCCGACGGACATGCCGCCATCGCCCAGGGGACCACCTGGGGCGAGGCCCAGACCAACGCCCACGACATCGTCGTTGACCTGCTCGGTGCCCATCCTGCCGCTGTGATTGTCTCTGTGGCACCCGCTGACCCGGACGCCGCCGCCGCGATCCAGGCTCTCATCGATGCCCGCATCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCAGGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 55879-56761 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIG01000015.1 Streptomyces sp. NRRL F-2890 contig15.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 55879 29 96.6 32 .........................T... ACTGGATTCTCATCGTTGTTGGAAACCTGTTC 55940 29 96.6 32 .........................T... ACGCCGACGCCGTGACCCGGGCCGCAGGCGCG 56001 29 96.6 32 .........................T... ATCTATCCGCCGGGCGAATACGCCGTGATCAC 56062 29 96.6 32 .........................T... GTGACCGGGATCCTCATGGACCGGGAACCCGC 56123 29 100.0 32 ............................. TCCCTCGGCCAGCACTTCACCGGCTCGCAGGA 56184 29 100.0 32 ............................. CGCGCTGGGAAGCCGCCGAAGCGGACCTGATC 56245 29 100.0 32 ............................. TCCACGAGGTCGGGGCATTCCGGCCGGGGGGC 56306 29 100.0 32 ............................. GCAAAGAGCAAGGACCACAGTTCCACGGTGCA 56367 29 100.0 32 ............................. ATTGCAACAGTCCATACAGAAGCTAGATCGGG 56428 29 89.7 32 .............AG..........T... TCGAAGGGCAGCCCGTCACCCACCTTGTTTGC 56489 29 86.2 32 ..T..........AG..........T... GCCGGCCGCGCCTGCGGTGAGCGCGAGCGAGG 56550 29 86.2 32 ..T..........AG..........T... GCCGTGATGCAGCAGCAGCGGGGCCGCTGGCC 56611 29 86.2 32 ..T..........AG..........T... GAGCCCTGATGGAGACCGAGACCACGACCGCC 56672 29 86.2 32 ..T..........AG..........T... ACCGACCTCGACGCCTGCGCAGCCGGGGTCGC 56733 29 96.6 0 ..T.......................... | ========== ====== ====== ====== ============================= ================================ ================== 15 29 94.5 32 GTGCTCCCCGCGCGAGCGGGGGTGGACCG # Left flank : CGCGCCGCTGAGGCCTCACCTCGGTCGTTCGCATCCGAGCCCACAGCCGAAGTAGCGTCCATCCAGCCGCCGTGGTGCGTTGCGCGGCTGTTCTCCGGCGGGATCGAGCGAAAGGGGTCGGCTCGTGGCTGAGTTCTGGATCGGACATCGGCGGTATCGGACGAAGGGAGAAGCGAAGACGGTCGTACGCGAGATACTGAACCGGTACACCGTGGGGAGCATCATTGATGAGAAGGAGGATCACCTGCTCCTGGTCGACCTCCTCAATATGCACCATGAAGCGGAGGAAAAGGTCGGCCCGGGCGTCGATGCTTTCGCGATCGCGCCGCCGCTGCGCGGCCCGCACTCCGGCTTCGAGGTGATCCGCACGGATGGAAGCCGCATTGACTTCTCTTACCAGACCTGCCTGAAACCGCCGACCTACCGTCAGCAGGTACTGAACGTGATGAGAGACGAGGTCAAGGCAACCATAAATGCTTACTTCGGCGCGACACCCAGGG # Right flank : GTCCACGAGCCCCACTGGCTTTTTCGACGTCACACGACAGCGGTTGTCGACGTCCTCGGGAGGCGCACGCCGCGCCCTGGTCTCGATGTCGATGAGAACGGGAGGCACCCGCCAGCGCTCGGCAACGGCAGGACGACGGCCGCCCCCTACATCCGTAGCCAGCGCTCTTGTCACGGGCCCCGAACGGGCGGCACACGGCATCTCGCCGGTCGGCATCGAGCCGCCGTCCGAAGCCATCGACCGTCGACGTGGGCAGCGCCTCCCGAACTGCCCGAGAAACGCTGCTCCTCGTCATCGACAGAGCCACCCCACGACGGGCCGTACCGAGTGGTGCTCCCCGCGCGAGCGGGGGTGGACCGCCCATCTGACCAGTATCAATCGGTCGCAGGTGGTGCTCCCTGCGCGAGCGGGGGGTGGTCCGTCCCGCACGAAGCTGAGCGACCCGATCGTCGTGTTCTCCCCGCGCGAGCGGGGGTGGTTCGCTCCACGGCCTCCCGACT # Questionable array : NO Score: 5.49 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGGTGGACCG # Alternate repeat : GTTCTCCCCGCGCAGGCGGGGGTGGTCCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 57091-57305 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIG01000015.1 Streptomyces sp. NRRL F-2890 contig15.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 57091 29 100.0 32 ............................. CCCATCTGACCAGTATCAATCGGTCGCAGGTG 57152 29 93.1 32 ........T................T... TCCCGCACGAAGCTGAGCGACCCGATCGTCGT G [57174] 57214 29 89.7 33 ..T......................TT.. CTCCACGGCCTCCCGACTCGTGCAGGCCGGCGA 57276 28 86.2 0 .........C..T............T..- | GG [57298] Deletion [57304] ========== ====== ====== ====== ============================= ================================= ================== 4 29 92.2 32 GTGCTCCCCGCGCGAGCGGGGGTGGACCG # Left flank : CAGCAGCGGGGCCGCTGGCCGTTCTCCCCGCGCAGGCGGGGGTGGTCCGGAGCCCTGATGGAGACCGAGACCACGACCGCCGTTCTCCCCGCGCAGGCGGGGGTGGTCCGACCGACCTCGACGCCTGCGCAGCCGGGGTCGCGTTCTCCCCGCGCGAGCGGGGGTGGACCGTCCACGAGCCCCACTGGCTTTTTCGACGTCACACGACAGCGGTTGTCGACGTCCTCGGGAGGCGCACGCCGCGCCCTGGTCTCGATGTCGATGAGAACGGGAGGCACCCGCCAGCGCTCGGCAACGGCAGGACGACGGCCGCCCCCTACATCCGTAGCCAGCGCTCTTGTCACGGGCCCCGAACGGGCGGCACACGGCATCTCGCCGGTCGGCATCGAGCCGCCGTCCGAAGCCATCGACCGTCGACGTGGGCAGCGCCTCCCGAACTGCCCGAGAAACGCTGCTCCTCGTCATCGACAGAGCCACCCCACGACGGGCCGTACCGAGTG # Right flank : CGTGATGGTGTACTCCGAGGAGGGGGCGGCCGCAGCGCACGCGCGACGCCCCGGCCGGGAATCCCGGCTGGGGCGTCGTCATGTTCCGTCAGCAGCTGCGCTTGGTCAGAGCCTGACGTCCGGTGCCCAGGTGACGTCCAGGATCCGGCAGATACGCCGGGCCTGCGATTCCACGAGGAACTCGACTTGGCCGTAGACGTCGTCGTCGTCCTCGATGTAGGCGCGGCGGATCTCGGTCGGCCAGGGGTAGGGCAGCGGGTCGCCGACGGCGTCCGCGCGCCACTCCAGCGCGGCGACGATCTGGCGCAGTGCGTCCCAGGGCGGGCCGTCGCATTTCGCTAGCTGCTCGTCCAGGTCGCGGTCGCTGTAGACGTCCCACCGGCGGTCGGGTTGGGTCACGCGGCGCCCACAGCGGTCCAGGAGCCCTCGCCGTTGTGGGCCGCCGCGTACTGGTCGGCGCGGGCCGGGCGCTGAGCGGCGATGCCTCGGATCCACCACCT # Questionable array : NO Score: 3.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGGTGGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-3.20,-3.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 58566-60243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIG01000015.1 Streptomyces sp. NRRL F-2890 contig15.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 58566 29 100.0 32 ............................. AGATCCAGGTCCGTATCCGGGAGTTCCAGCTC 58627 29 100.0 32 ............................. GCCGCGGCCGGCATCGTCGACGCCGCCTGGCT 58688 29 100.0 32 ............................. TCAGCGAAAAAGCACCTCGCGATCCACTCCGA 58749 29 100.0 32 ............................. CCCACCCGATTGCACTCGGCACGGGAGTACAC 58810 29 100.0 32 ............................. GCCCGGAGCCCGTTGCCGCGCCTTCGGGCCCG 58871 29 100.0 32 ............................. GCGATGGGGCGGGTCACGGTGTACCTCCGGGT 58932 29 100.0 32 ............................. TACCGCTGGACATTGACCTGTACTCCAAGTTC 58993 29 100.0 32 ............................. GCCATCATGCCCACGGGCGCCGAGGCCACCAC 59054 29 100.0 32 ............................. CGGATGGTGTAGCGGTCGGCTTCCTGGTCGTA 59115 29 100.0 32 ............................. CCCGCTCACAGCCCACCAGGCGTCGACTACGC 59176 29 100.0 32 ............................. CGCACCGTGCTGACCGCGTACTGCTTGAACTC 59237 29 96.6 32 ............................C TCACCGTGCCTTTCGGTCCTCGGCCCCCCTTC 59298 29 100.0 32 ............................. CCCGGTCAGAGCGTCACGGGGGCCATCATCCT 59359 29 100.0 32 ............................. ATCGTCGGAGCCGAAATCCGCGCTACCGGGAG 59420 29 100.0 32 ............................. GAGGTGGAGTCCTGGCGGACCCACAACCGGCC 59481 29 100.0 32 ............................. CAGTGCGCCGACCGGTCGAGGACCGCACCAGC 59542 29 100.0 32 ............................. TCCCGGATAGTGATGTCGCCGGATGTCGTGCT 59603 29 100.0 32 ............................. GGGCGGCCGGGGCCGTGGCTGCTCGTACGAAC 59664 29 100.0 32 ............................. AGACGGGGATGGCCGCCTGGCGCGACCCCCAC 59725 29 96.6 32 .........................A... GCGTTTCCGCCGTGCTTGGCCCACTCCTGCTT 59786 29 96.6 32 .........................A... TGTCCGTGCCGCCCACCGAGGTAGACGTCGCC 59847 29 96.6 32 .........................A... GCTGTCCGGGGCGCGGCGGGGTCGTCCGGGAG 59908 29 96.6 32 .........................A... CTGATCCAGGAACTGAGCCGGGTACGGGACAA 59969 29 96.6 32 .........................A... CTTCCGAAGGGATAACTTGCTCGCCCTCGTGG 60030 29 96.6 32 .........................A... AGATCAACTGGAGAATCCCGGTCGCTACCGGC 60091 29 93.1 33 .........................GT.. TCGCGAACTGATCGCCTCATCACCGATTGGCAA 60153 29 79.3 32 .CC...T............A..C..A... TGCGGGGCATGGCAGCCCGGAGACATACCGCC A [60175] 60215 29 75.9 0 ......T..CT...G...CA.....G... | ========== ====== ====== ====== ============================= ================================= ================== 28 29 97.3 32 GTGCTCCCCGCGCGAGCGGGGGTGGTCCG # Left flank : CTCAGTAGTAGCCGTCGAGCGGGTCGTGCGACGGGGATCCCCCAACATCCGGTTCAGGTGGGCGGGTACGGCATGGCAGTCCGCGAGAGAGCGACGTCCGTCTCCGGGGTGCTGCCATCGGTAGCTGTCTCCGTGCTGGTTGGGCTCGCCCCACGTGGAGTGGGTGCGCGTGGCGCGTTGTCAGCGGCCGGCGACCAGGGCGGCGGGGGCCGGGTGGACGCCGCGGTCGCGGACTCGGTGGCCGCCGGTGGCGCGGGCCCGGTGGTGGAGGTGTGCCTCGTACCGGACCCGCCCTTGTCGGAGGGTGGGGGCAGACGCGGTGTGCTCTTCGGGTGTGAGTCGCAAGGAGGTGAGGTCTGACTCATGGGGTGAGATGTGTTGCCCTTGCTAGTTGTCATCAGGCGGTGCTTTGTCGCAGGCCTTTGACATCATGAGTCGTGCTGTCGAATCCGGATGTTCAAGTAGTTGCAAAGCCCTTCTAACGCCGCAGGTCAGGAAGG # Right flank : GCCCCGGGAGGACGCCCGGCGGATCGTGGCGGGGTGCCCTCCGGGTGGGTGGAGGTGAGTCGCAAGGAGGTGGTGAGGTCTGATTCACGGGTCAGGTGTGTTGCCCTGGCTGGTCGTCATCAGGCGGTGCTTTGTCACAGGTGTTTGACATCATGAGTTGTGCTGTCGAATCCGGGTGTTCAAGTAATTGCAAAGCCCTTCTAACACTGCAGGTCAGGAAGTGTGCTCCCCGCGCAGGCGGGGGTGGTCCGGTGAGCGGGCTGATCAAGCGGATCCGCCGCTAGTGCTCCCCGCGCAGGCGGGGGTGGTCCGTCGCCCTAGATCAGGTGGGAAAGCCGTACGTAGTGCTCCCCGCGCAGGCGGGGGTGGTCCGATCCGGCCGCGGGTGGTCGGCTCGGGGATCTCGTGCTCCCCGCGCAGGCGGGGGTGGTCCGGCGGCTACTACCGGATGGCGCACCACTGGGTGGTGCTCCCCGCGCAGGCGGGGGTGGTCCGACGAC # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCGAGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGAGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 60465-61225 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOIG01000015.1 Streptomyces sp. NRRL F-2890 contig15.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 60465 29 100.0 32 ............................. GTGAGCGGGCTGATCAAGCGGATCCGCCGCTA 60526 29 100.0 32 ............................. TCGCCCTAGATCAGGTGGGAAAGCCGTACGTA 60587 29 100.0 32 ............................. ATCCGGCCGCGGGTGGTCGGCTCGGGGATCTC 60648 29 100.0 32 ............................. GCGGCTACTACCGGATGGCGCACCACTGGGTG 60709 29 100.0 32 ............................. ACGACTTTCCTTTCTGTACTCCGTCCGGGTGA 60770 29 100.0 32 ............................. CCCCAGAGCGAAACTGAGATTGAAGATCAGGC 60831 29 100.0 32 ............................. GACGGCTGTTCCACCCGGGCCGAGGTGCTGCT 60892 29 100.0 32 ............................. GACGGCTGTTCCACCCGGGCCGAGGTGCTGCT 60953 29 100.0 32 ............................. TCCTTGCTCGCGATCATGCCGATGATGAGCGG 61014 29 100.0 32 ............................. TCGGCCCGAGCCTCAAGAACGCCACCGCGGCG 61075 29 100.0 32 ............................. GCGGGAACCTCTACCAATTGGGTCAGCGCAGC 61136 29 100.0 32 ............................. TACGAGCGGATCAGCTCGCCCGCGGCGCCGTC 61197 29 89.7 0 .............GA.............A | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.2 32 GTGCTCCCCGCGCAGGCGGGGGTGGTCCG # Left flank : ACAAGTGCTCCCCGCGCGAGCGGGGGTGGACCGCTTCCGAAGGGATAACTTGCTCGCCCTCGTGGGTGCTCCCCGCGCGAGCGGGGGTGGACCGAGATCAACTGGAGAATCCCGGTCGCTACCGGCGTGCTCCCCGCGCGAGCGGGGGTGGGTCGTCGCGAACTGATCGCCTCATCACCGATTGGCAAGCCCTCTCCGCGCGAGCGGAGGCGGAACCGTGCGGGGCATGGCAGCCCGGAGACATACCGCCGTGCTCTCCCTGCGGGCGCAGGTGGGCCGCCCCGGGAGGACGCCCGGCGGATCGTGGCGGGGTGCCCTCCGGGTGGGTGGAGGTGAGTCGCAAGGAGGTGGTGAGGTCTGATTCACGGGTCAGGTGTGTTGCCCTGGCTGGTCGTCATCAGGCGGTGCTTTGTCACAGGTGTTTGACATCATGAGTTGTGCTGTCGAATCCGGGTGTTCAAGTAATTGCAAAGCCCTTCTAACACTGCAGGTCAGGAAGT # Right flank : AGAGAAATCATGATCGCGCCCATCACGATCGACGGCATGGCCGGCCTCCGCCCGGAGGCCGACCACCAGGCGCTCGAAGCCGCCCTCGACCGCTTCCGCGCTCAGCACCCGCACCGGCCCATCGGCGAGGAAGAGTCCAGGCTCGTCCAGCTGAACAACGCCCTGCGCCGCTACAACATCCTGCGCCCCCGGCTGATGGAGGAGTCCATCGCCCGCGACGAGCGCGACACGGCGCTCGCGGAGGTCGAGGCGCGCTGGGAGGCCTTGTCCACCGCCGCCAACTGGCTGGCCGCTCACCACACATACGTCCTGGCGGTCGCCGCCGCCCGGATCGCCATCGGCATGTGGGAGGACCGGGCCGCCGCGGCGCAGTGGCCGGACCAGTTTCGGATGAGCGAGCAGGACCTGCTGGGCTACCGGCAGATCCTCGCCGCGGGGCACCCGCCCGTCGAGCCGCTCGATATCAAGCCGGCCGTCATCGCCGAGCGGCTGATGGCGGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCAGGCGGGGGTGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCAGGCGGGGGTGGTCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //