Array 1 247211-248561 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITF01000005.1 Cronobacter sakazakii strain MOD1_KW9 csakKW9_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 247211 28 100.0 32 ............................ GTATCTGGCGGCAAAGACAGCCTGGCTCAATG 247271 28 100.0 32 ............................ GTGCTACGGATGCCTTCTGGCGAACGGTAGAA 247331 28 100.0 32 ............................ AGTTCGCCAGGGTACGAGGGGCTACGCCGATG 247391 28 100.0 33 ............................ AGCCAGGCCTGCGGCTGATCGGTGTAAATCAGC 247452 28 100.0 32 ............................ GCAATTCGATGCTCAAGCCCTTGACCCTGGCA 247512 28 100.0 32 ............................ TTCGTGTCCGCATTTTGCGCAAACTACCTCAT 247572 28 100.0 32 ............................ GCTACGGCGGGGTTAGCTTTAGCTATGAATGC 247632 28 100.0 32 ............................ AACATGTACGCAGGTGAGCCTTAGCATTGTCT 247692 28 100.0 32 ............................ ATGCACATGTTTGCGGCTTCCGTGGTGAAATA 247752 28 100.0 32 ............................ TGGTGCCCCCAAACCTCCGACCGCCTTATGTA 247812 28 100.0 32 ............................ AATCTCTCGACCGCCGCACTTCGAATAGTCAA 247872 28 100.0 32 ............................ AATGCGCCAGGGGTTTCAATGACGGCTGATGT 247932 28 100.0 32 ............................ TCGGCAGCTCCGGCTTTATTGCCGTCCCGGAC 247992 28 100.0 32 ............................ TTTCTGTTTTGGTTGGTTGGTATACAGTTGGT 248052 28 100.0 32 ............................ TGTTGAGGCTTGCCATTCTTGCCAGTGCGGGC 248112 28 100.0 33 ............................ GTATCTGGTTTGGTGTCATCGGTGTTCTCCTGT 248173 28 100.0 33 ............................ TGGATGATGCAGTGTTAACTAAGCAAGTCGAAA 248234 28 100.0 32 ............................ GTGGAATGAGGGGTGAAGCGTGAGCGAATTTA 248294 28 100.0 32 ............................ GGTAACGTATCCGGCCTATCAGGCCGCCGATT 248354 28 100.0 32 ............................ TTTCAATCTTCCGGTGCGGTTGCGACTTGCCA 248414 28 100.0 32 ............................ GCACTCCAGCCCGCAACTTTAGACGCACCCAC 248474 28 100.0 32 ............................ TCAGGCTCGAACACCTCGCACAGCTCCTCGTG 248534 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTGTACGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCAGGACGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCTT # Right flank : AACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAGTAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCATGGGGAAATTATCTATAAAATTTATGGTTTCTGCTGTAAGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCAGTGCTAATTAGCCGATATAATGGCGATAACACGTAAGAACCACATTAACTACAGACATTTGCAGGCTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAATAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAATTGACATTTAGTGTCATTTATTAATAAAGCGCGGGAAATGAAAGGGATGTCACGGCATATTTAAAGGCTTAATAATAGACTCATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 257661-258167 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITF01000005.1 Cronobacter sakazakii strain MOD1_KW9 csakKW9_contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 257661 28 100.0 32 ............................ AGATTGTTGACTGGTCATTCACTACTGTGCCC 257721 28 100.0 32 ............................ GGTGGATATGCAGACACAATCTACATCACCGC 257781 28 100.0 32 ............................ CAACCTCAAACACCAGCCAAAAGATGCTTTCA 257841 28 100.0 32 ............................ GCTGAACGGGATAGATATCGTTGCTATGACAC 257901 28 100.0 32 ............................ AGCACAGCCATCGCGCCGGTGCTGTAGGTGCC 257961 28 100.0 32 ............................ TGCGAATACAGCGCGCCCGGTGCCACCACCGC 258021 28 100.0 32 ............................ ATCACCCTTGATAACCTCTCACAAACAATGCT 258081 28 100.0 32 ............................ ACATTCCACTGACTGTCTGCATCAGACCCGTC 258141 27 89.3 0 .....................-CG.... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCCATGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACAGGTTCAGGGCTGGCGCACCGTGGCGCGCGTACAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTTCTGGTTTACAGGTGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCAGTCAGCACTACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGCCTCGCTAATTTGTTGATTTTTATAGTAGGTTAGTGAGGCGTTGAAAAAAGGGTTTTTAAGAGGTAAGCAGCGTTTATATTTTTATAAACAATGGGTTAAGAATTTTTGCTTCA # Right flank : AATCACAGCGAATTCCCTTGCAGTCATACTTGACCTTCCCGCAAGGGGAGGGTTTAAGCTCCACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCGTTTGCCGCAGAGCAACCCGCGCTGCCCATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTTACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGTCACGACCTGGGGATATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAACCTCGCCGAAGAAACGACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGCATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 241750-242571 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITF01000008.1 Cronobacter sakazakii strain MOD1_KW9 csakKW9_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 241750 29 100.0 32 ............................. CGAAAACGTCGATCGCGTGGCCCGTCAGGTGG 241811 29 100.0 32 ............................. CGCGAGTTCATCGCCACCCGTTGGCCCATAAC 241872 29 100.0 32 ............................. ATGAACTTAAACCTCAAGAAACGGCTTGCGGG 241933 29 100.0 32 ............................. CGTTCATCCTTCCGGCCAGAGGATCACCCTAT 241994 29 100.0 32 ............................. GCAATAAAAGGCGCGGATCGCCGGAATCTGGT 242055 29 100.0 32 ............................. GAGCCGCTTATTCGAAGCGTTGGCGGCTACTA 242116 29 100.0 32 ............................. AGATAAATCCGCTCCCCCCTGTCGAGCGCGTG 242177 29 100.0 32 ............................. CCTCGCAATCTCCTTCCTGTTCCAGCAGCCAG 242238 29 100.0 32 ............................. GCACGGAATCAAACCGAACCCGTTGTATCAGC 242299 29 100.0 32 ............................. GGCATTTCGGTTTTCAGTGAATACCTGTTAGC 242360 29 100.0 32 ............................. GGAAAAACGTTGAGTTACCGCGACGCGAGCAG 242421 29 100.0 32 ............................. GCTGTCGCCGTTGAAATCACCGCCGAATCACA 242482 29 100.0 32 ............................. GGATTCGATAACAGCGAACTTGTTATAGCTGA 242543 29 89.7 0 .....................TA.....T | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.3 32 CCGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTTAAATGGATGATGGCAAACAACATCGCGTTTATTGTCGCCAATATCAATATCAACTACCGCCGGCCCGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTGGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGAGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : TACGCCACCTGATTCACGGCGCTGATGTGACATAGGGATCACGATTTCAGTCATACCTTTATTGAACCCGCTTCGGCGGGTTTTGTCACATCCCGTTCCCTGTTACTCTTTTGGCACATTTATCAAAGGGAATAGGGATATGAAGAAGGTTGTCATGGCTATTATTTTAGGCTCTTTTCTAACTGGCTGCGCGCCTGGCTACGTTTATACGCCACCTTCTAAGGTGGAATATGATAAAACCATGCAAGAAGCAAAGCGCAAGGACGCAGAGTTTGCTGAAAAAGTAAAAAATATAAATTTAGATACTGCGGATGTTGGGGTAAAGCCGAAGGATTACCAATCTTTGGTTGAATCGGCGATTCGTGAAGGTTTGAAAGATCCAGACTCTGCTAAGTTCTACGACTTCACCTCGCCACGCAAAGAAGTAATGGTTGAACAGGGTAACTTTGTTTATGGCTACTCGACATGTGTTTATGTTAACGCCAAGAATTCATATGGTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 269451-270396 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITF01000008.1 Cronobacter sakazakii strain MOD1_KW9 csakKW9_contig_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 269451 29 100.0 32 ............................. AAATACCTCGATATGGCACAGCACTATCAGCA 269512 29 100.0 32 ............................. GTTCGATTTGCCCGACCAGAAAACGAGCTGAT 269573 29 100.0 32 ............................. TCAACCCGCTGGGTTTCCGTGTGACGAGTTAT 269634 29 100.0 32 ............................. GCTCAGAGCTTCCGCTCGTTCTCTGCAAAATA 269695 29 100.0 33 ............................. CGTTGCACTCTCGCGGCGAAAACGGAAGCGTGC 269757 29 100.0 33 ............................. GCTAGGAATAAATTAATCGCACTTGCTATCGGC 269819 29 100.0 32 ............................. ACAACATTACCCATAGCCCAGGCCAGCACCGG 269880 29 100.0 32 ............................. TTGGATTTATTGTCTGAATATCCAGTTGACCA 269941 29 96.6 32 ............T................ TATTTTGCCGTCTGCGCAACCCACCGGCCCGC 270002 29 100.0 32 ............................. GTCGACGGGCAGGGCCGCCCGCTCTGGCTGCC 270063 29 100.0 32 ............................. ATGACGTGTTTATGCTGGAGTTTGAGAAGCCA 270124 29 100.0 32 ............................. GCAGGACCATATTCAGTATTGTCAACCGGGGA 270185 29 100.0 32 ............................. CAGCTAACGCAGGCGCGTGCGCGTCAAAACGT 270246 29 100.0 32 ............................. CCGAACTTTGTCGCGGTATTCGCGGGTTGTGC 270307 29 96.6 32 ....C........................ GCGGTGCCGCATGAGCAAAGAAGTCGAAAAGC 270368 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTGGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCGGGGGTTTACGTGGGCGACGTATCGCGTCGGGTGCGTGAGATGATCTGGCATCAGATAAATGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGCTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCGTTTTTACCACTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAACCGTTGGTGAGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTGTTGAGTAGAATCGCCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATAAATTGCCAGGTCCGGTGGGTGCGCTTCGCTTACCCAGCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCACGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //