Array 1 114605-115974 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYQ01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain PY89 NODE_6_length_184043_cov_67.877954, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 114605 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 114666 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 114727 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 114788 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 114849 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 114910 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 114971 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 115032 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 115093 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 115154 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 115215 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 115276 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 115337 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 115398 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 115459 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 115520 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 115581 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 115642 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 115703 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 115764 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 115825 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 115886 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 115947 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 132107-133278 **** Predicted by CRISPRDetect 2.4 *** >NZ_WRYQ01000006.1 Salmonella enterica subsp. enterica serovar Typhimurium strain PY89 NODE_6_length_184043_cov_67.877954, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 132107 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 132168 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 132230 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 132291 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 132352 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 132413 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 132474 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 132535 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 132597 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 132700 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 132761 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 132822 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 132883 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 132944 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 133005 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 133066 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 133127 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 133188 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 133249 29 96.6 0 A............................ | A [133275] ========== ====== ====== ====== ============================= ========================================================================== ================== 19 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //