Array 1 52884-52460 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUVP01000026.1 Bacillus thuringiensis strain AFS086178 AFS086178_68_D2_Contig26_140404, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 52883 32 84.4 34 ......T..CT.GC.................. AACCAATCGAATATAAACGTGGGAAACCGAAAAA 52817 32 100.0 34 ................................ GTGACGGATATAGAGACAGGTGAAAAAACAAAAA 52751 32 96.9 33 ...................T............ CTTAAAGAATACTATGAAATTGAAAGAAGTACA GT [52733] 52684 32 100.0 34 ................................ TTTAATACGGCTAAAGATTTACTAGCTGGATTAA 52618 32 96.9 30 ....................A........... AGTAGACAGAAGATGAAAGAAGATTTCTTT 52556 32 90.6 33 ...A...............G......C..... CCATTAACAAAAATATAAAAAGCATACGTGCCG 52491 32 71.9 0 ....T....C.......C.....AG..AGG.C | ========== ====== ====== ====== ================================ ================================== ================== 7 32 91.5 33 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TGATCCGATTGATATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCCTGGGAAAGATAAAGGTTCAGATACGATGGGGATGAAGCATCGTGTTGATTTTGGAGTCTATGTTTTTTATGGAAGTATTAATACGCAATTAGCAGAAAAGACAGGTTTTACTAACGAAGATGCGGAGAAGATTAAAAATGCACTGGTTATACTGTTTGAAAATGATGCATCAGCAGCACGACCTGAAGGAAGTATAGAAGTACATAAAGTTTGTTGGTGGGATCATAAATCAAAAATTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATCGATGATTATACTGTATTGGTACATGAATTAGATGATTTAAAAGTTGAGGTTATTAATGGAATGTAATAAAAAGCGTCAGAATAGTTGAACGAAAGTATCCTTATAAAGATATACTTTATCAATTTATTAAAGGAAA # Right flank : TGGTAATATGCTTGATAGTAATTTAGTGTCTCTGCTGGAGTAAGAAGAACTGCTTCAATTCATACAGCAACTAGTGTTGATTCAATTGACATTACTAGTATGCAGATTATGAAAAGTATAAATTTTGAGCCTGAGAAGGATAAAGGTTCAGATACGATGGGATGAAGCATCGTGTTGATCTTGGAGCTTATATTTTTTACGGAAGTATTCATATGCAATGAGTAAGAAATACAGATTTTACCAAAGGTGATGCGGAAAATATTAAAAATGCACTGGTTACATTGTTTGAAAATGATGTATCAGCAGCACGCCCTGAAGGAAGTATAGAAGTACATAAAGCTTGTTGGTGGAAGCATAATTCAAAACTTGGCCAGTACCATTCCGTAAAAGTACACCGTTTACTGGATATTAAGCGGAACATTAACGAACCAAAATAATTGATGACTATAACATTTTGGTAAAAGAATTAGATAGTTTAAAAGTGACGATTATTGATGGAC # Questionable array : NO Score: 8.39 # Score Detail : 1:0, 2:3, 3:3, 4:0.57, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.70,-2.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 59861-59168 **** Predicted by CRISPRDetect 2.4 *** >NZ_NUVP01000026.1 Bacillus thuringiensis strain AFS086178 AFS086178_68_D2_Contig26_140404, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 59860 32 100.0 35 ................................ GTAAAGGATTGTAAGAGGACAGTTACGGACATAAA 59793 32 100.0 33 ................................ ACTTACTTTAGCGCAACTAGAGCATATTCATTT 59728 31 93.8 34 .........C.......-.............. CCGCACCCTGCGAAACAATAACAGTTGTTGTCTG 59663 32 90.6 34 .........C.A........T........... ATCATGTCAAAGGCCATTTGCACTCATTGAGGTA 59597 32 93.8 33 .........C.....................C CATTGGTTTATCAGGAGTCATTGGCTTATCTTT 59532 31 90.6 36 T.......-..........T............ ATCATTTGAGTGCGATCTATTTCAACAGCATTTAAA 59465 32 96.9 34 .......T........................ ATTTGGTAGCGCATTGTATATGGATGCACGATTT 59399 32 93.8 36 .......T.......A................ ACAATTCCTCGTGGTATGAACCCTGAAGATGTTAAA 59331 32 96.9 35 .........C...................... TCAGACGGCTTGTCTTTTTCCGTAGGCTTATCTTT 59264 32 90.6 33 T..........AG................... GGATCAGTAAACGGCAATGAAAAACCCGCCGTC 59199 32 93.8 0 .....................CA......... | ========== ====== ====== ====== ================================ ==================================== ================== 11 32 94.6 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : TATCTAGTTATATATTAAAAGGTGAACACAAATAAAGAGAAGAATAATTAAAGTATTTGTGAGTTAGCAAAATAAAAGAATTTTTAGTATTCAATATTTTTAAGAATGTTATATCATAAAAAAAGATCAAACGATGATATAAAGAATTAACTTGATAGGTGGATAGAGAGACAATATGTAGTGAATTTTATTGTAAATTACGACTCCATATATTAAGGGTATTATGAAACTATACATTTTTGTTAATCAGTTAGGTAATAGCTATGAAAATAGGGTCGAACATATTGGTGTAAAAGAATAAATTGATTTAGAAATCTCTTTAATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTTATACTTTATGGATTGAATTTATAATTTTTATAAAAATTACTTTACTAAATAAAAATATTTTTATACTTTTGAATAGAATTAACGTATTTGTGGTTGATTTTGAACACAAATCGGG # Right flank : TAGTAATGCTCTGGCTTTAAAACGCTCTGCAGTTTAGTAGATACTCAACCGGAAGTATCTACATCTGCAGTATCTAACAAACATGTAAAAAATATAAAATGGAGGGAGATTGAATGACGTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAACATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATTGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAGGGGGAGTGTTGATCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATTATTCCTTACAAAGGGATAATATCTGAGATAGTGGGAAATGCCATCATTTCTCACCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCC # Questionable array : NO Score: 8.31 # Score Detail : 1:0, 2:3, 3:3, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.32, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //