Array 1 62481-62026 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBNA01000022.1 Citrobacter rodentium NBRC 105723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62480 29 100.0 32 ............................. GAGTATGTTTAAACGTTTACTGGCGCGCCTGT 62419 29 100.0 32 ............................. TCATATGTTGCCGCGTTTCCAGACGTCATGTT 62358 29 100.0 32 ............................. TGTCGGATAATCCGCACTTTTTGGCGAATGAC 62297 29 82.8 32 GT.........AT...........A.... TATCGTTCCTTCGCGGATGTCGTCACGCAACA 62236 28 86.2 32 ...........A....-.......A.T.. GAAGGTGATGAAATTAATCAGCGCAAACTGGA 62176 29 89.7 32 ...........AG...........A.... ATATAGATAGCCATCAACAACACCGCTTGGAC 62115 29 96.6 32 ........................A.... GGGCAGACGTTTGCCCGCTGGATGTAGCTATT 62054 29 89.7 0 .............C..........A.T.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 93.1 32 AAGTTCCCCGCGCGAGCGGGGATAGACCG # Left flank : GTGCTATTAGCCGGTGAAATCGAGCCGCCGCAGCCCGCTCCGGATATGTTGCCCCCAGCGATACCAGAGCCGAAGCCGCTGGGGGATAACGGACATCGGGGACGTAGCGGATGAGCATGATGGTGGTTGTTACGGAAAATGTTCCTCCGCGTTTACGAGGGCGTCTTGCTATCTGGATGCTGGAAATTCGCGCTGGCGTTTATGTTGCAGATGTTTCGAAACGCATCCGGGAAATGATATGGCAGCAAGTCATTCAACTCGGTGGTGAGGGAAATGTTGTAATGGCATGGGCGACCAATACGGAGTCAGGTTTTGAATTTCAGACATGGGGTGAGAATCGTCGTATTCCCGTGGATTTGGATGGACTTCGTTTGGTCTCATTTCTTCCTGTTTAAAATCAAATAGTTGACTGATCTTTAAAAATGTGGATTTGTTGATTTTAAGTTGGTAGATTGTTGCCTTTGAAGAAAGTCTTTTAAAATCAGTCGGATATTTTTAGT # Right flank : GGCTAATAAGGGTGCCCGGCACATGACACAATTGTTTCTATATTGTACCCATTTTTACTATCATTTCTTATGCTTCAGTTATACTGGTATTAACCAGAGTCCACAGAAAACTGGAGAAGGGTAAAGCCAGATTTGCTCGTTGATGTAAGCTCTCTTTTTGGATTTCAGAGATATAATAATATTAGCAATAAAACTTCCGAGGAAAAACAATACGCCTGACATGTCGTAAGCCAGACCACCGTAACCTGCATTCCGGCTCTTAATGTAAAGCAATATCATGGCTGTGACGGGATAAAGCATCAGCAGCAACGTCAATAATATCTGTTTTTTTAAGCGCATTTCCCTTGCAGACATTACGCAAAATATAATAAACAGAAACAGCCTGCCTGAATACCTGTATCTACCCATAAAAAATGAAAAGTCCGAAAGCATAGACATGAGTTGTTTAATCGATAGCGTTGTTTTACCCTTCATAACGTGATTGCCGGAGGCAATCACGT # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAGTTCCCCGCGCGAGCGGGGATAGACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCGAGCGGGGATAAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83556-82552 **** Predicted by CRISPRDetect 2.4 *** >NZ_BBNA01000022.1 Citrobacter rodentium NBRC 105723, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 83555 29 96.6 32 ...........................G. GACTCTAACGCACTCAATCCACTTAATCCCAG 83494 29 96.6 32 ...........................G. AAACCACTGTAACCGCCTTCTAAGCGGTTTGC 83433 29 100.0 32 ............................. TCATTCCGGCGCACCAACTGGAATTGCTGGAA 83372 29 100.0 32 ............................. TAATAAACAAAAATCAACGCATCCTGGTGGCA 83311 29 100.0 32 ............................. CAGCTGGCAAGAACAAAATCGACTGGAGCGAC 83250 29 100.0 32 ............................. TTTCGGTGCCGGAATGACGTGTGAGCGTATTT 83189 29 100.0 32 ............................. ATCTGTTTATAGCTGGCTATAAAATTTATAAA 83128 29 100.0 32 ............................. TGGAAACGAACACCGCAGGGGTACGTGATTAC 83067 29 100.0 32 ............................. ACTACGGTTGATTTATAAGAGCTACCATCCGG 83006 29 100.0 32 ............................. TACGCGACATGTATTTTTTGCCGTGTTTCATG 82945 29 100.0 32 ............................. TTCATGGGGGGTCACGACCCAGCCGCCCAGCT 82884 29 100.0 32 ............................. TACCCCATTCAATACGGGCGATGCTGAATAGT 82823 29 96.6 32 ............G................ TTAATAGCTGAAACAGGTAAACTCAACCGCGA 82762 29 96.6 32 ............G................ GCGTAAACCCAGGGCTCGGCTTTTTTGTGAGT 82701 29 96.6 32 ............T................ CCATTATCGAACGCCGCGCTGAACTCGCTGAT 82640 29 96.6 32 .............T............... ACGCAACCATCATTGTTGCTGAGCACCACAAT 82579 28 79.3 0 .......T....AG......A.-.C.... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTACACTGCCGTTATCTCTCACCGTTCTGGCGAAACTGAAGACGCGACCATCGCTGACCTGGCTGTTGGTACTGCTGCGGGCCAGATCAAAACCGGTTCTATGAGCCGTTCTGACCGCGTTGCTAAATACAACCAGCTGATTCGTATCGAAGAAGCGCTGGGTGAAAAAGCGCCGTACAACGGTCGTAAAGAGATCAAAGGTCAGGCGTAATCCTGTACTTTCGTTCTGATATAAAAACCCGCTTCGGCGGGTTTTTTGCTTTATATCATCCAGTGATTTTGACCCCGGTCGTTCTGTCTCGATCGTGAATTGAAATTTTCAATGGTGCGATAATCATCACACTGTTTTGGTAGATTTGAAGAAAGAATAGCTACCATCTTCTTTATCTTATTAAAATCAACAGATTAGTTGCTCTTTAAAAATGACTATTTGTAAGGATTAAGTTGGTAGAATGTTGTATTGATAGAAATTGCTTTATAAACAGTTGGTTGTATTTAGT # Right flank : TAGTTTTGCCTGGCTATCTGCGATCTGCGATAATGCGCCCTCATAACCCCAGACAGAGACGATTATGCAGTACCCGATTAACGAGATGTTCCAGACCCTGCAAGGTGAAGGTTATTTCACCGGCGTCCCCGCCATTTTTATCCGTTTACAGGGATGCCCGGTTGGCTGTGCCTGGTGCGATACCAAACACACCTGGGATAAGCTTGAGGATCGGGAAGTCTCCCTGTTCAGCATCCTGGCGAAAACCAAAGAGAGTGATAAGTGGGGAGCGGCGAGCAGCGAAGATCTGCTGGCGGTAATCAATCGTCAGGGATATACCGCGCGTCATGTGGTGATTACCGGCGGCGAACCCTGCATCCACGATTTAATGCCGCTTACTGCGTTGCTGGAAAAAAACGGCTTCAGCTGCCAGATCGAAACCAGCGGTACCCATGAGGTGCGCTGTACGCCGAATACCTGGGTGACGGTATCTCCAAAAGTGAATATGCGTGGCGGCTATG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //