Array 1 138197-136335 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVXL01000005.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN051011 CFSAN0510115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 138196 29 100.0 32 ............................. TCCGACTCGCCAACCTGGTCTATGTGCTCTAT 138135 29 100.0 32 ............................. TCAACAACGGACTTACATAATTTTGCTTGTAT 138074 29 96.6 32 ............................T GCACCTTCCAGGATTGCAGAAATATAATTAAT 138013 29 100.0 32 ............................. CCCGTTTTGTGGCGGTGTGGCTGATCGTGTAA 137952 29 100.0 32 ............................. AATCCCGATGATCATGAATATTTCTGGCGCCA 137891 29 100.0 32 ............................. GATCGCCCTCCGTTGAGCCATTATGTACAGCC 137830 29 100.0 32 ............................. GCCAGGTCCGTATGAGGACCGTATTTGAGCAG 137769 29 100.0 32 ............................. GTTCGATTCACATCAGGTCTGGGGGCTTACTA 137708 29 100.0 32 ............................. CAAAAATGATTACTATAATCCCATGTTGAACA 137647 29 100.0 32 ............................. ATGTGTGAGATACCGGCGCGGCCTGACATCAC 137586 29 100.0 32 ............................. CGGCGCCGTCCGGTAGTTCGTCGACAGAATCG 137525 29 100.0 32 ............................. TGACGTTATACATTTTCTCGCGAGCGATTTGC 137464 29 100.0 33 ............................. TTGAGCACGACGAAATTTTGGTTTGATGCAGCC 137402 29 100.0 32 ............................. GATACGGGCGCGCGGACGTTCTCCGCTGGCAG 137341 29 100.0 32 ............................. CCGCCAACTGTTTTGATAAATATCACCTGGCC 137280 29 100.0 32 ............................. CTCACGCCCATCTTTTTCCATTCATCCCACAA 137219 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 137158 29 96.6 32 ...........................T. TTGTCAGCGCTGACACTACTCGCTGCTTTCTG 137097 29 100.0 32 ............................. TCGAATCAGGTGGCGAACAGATCGAGTATCGT 137036 29 100.0 32 ............................. CCTGCTTTCTCTATCAAAGGGAAACTTCCTTT 136975 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 136914 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 136852 29 100.0 32 ............................. TGAAATCCATCCGCTACGAACCTGAAGAAAAA 136791 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 136730 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 136669 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 136608 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 136547 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 136486 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 136425 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 136364 29 93.1 0 A...........T................ | A [136337] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGCAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTTAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 154795-154340 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVXL01000005.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN051011 CFSAN0510115, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 154794 29 100.0 32 ............................. GGCGCCATTACCGGCGAATTAGCCGCCGGGGG 154733 29 96.6 32 .G........................... CAAGTGCCACACCGGCACCGCCTTAGCGCGGA 154672 29 100.0 32 ............................. CAAAACCTGGGGGACGAGGAGCTGTCCATTTG 154611 29 100.0 32 ............................. AGGTGTCCCGGTGGATGCTGGCCCGCAGGTTC 154550 29 100.0 32 ............................. TTACGGCGATATTCAGGCGGGTAGTCCAGCAT 154489 29 100.0 32 ............................. GCGCAGAATTTACAGGTGTCACTGTTGTCCGG 154428 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 154367 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 8 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCTTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //