Array 1 7063-5646 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERF010000048.1 Desmonostoc muscorum CCALA 125 contig56, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 7062 37 100.0 34 ..................................... GTAAATAATGACGTTTATAACGACGCAAACTACG 6991 37 100.0 37 ..................................... ATATACGACGTATTTAACGTCACAAAACACGTCGTAT 6917 37 100.0 35 ..................................... AAATGTCAATGCTAAAACTAAAAATTCCCTGGAAA 6845 37 100.0 33 ..................................... TGTGTAATTAGCCCAAAGAACCTTTGCATTGCC 6775 37 100.0 35 ..................................... ATAAGCTTCTATATTTCCTATATGCACTAGCACTT 6703 37 100.0 36 ..................................... TTAAGCCTTTCAAACCTAGCGCTTCCCAATCATCAG 6630 37 100.0 34 ..................................... GGTAATCTCAATCTTAATGCCTTTTGACGGACTT 6559 37 100.0 35 ..................................... TTGAAAGGGTATGCGGTACGCTGATCGGTTCTAAA 6487 37 100.0 37 ..................................... GTGTAATTCTAAGGGTGTAGTCGTAGCATTAAGGTTG 6413 37 100.0 37 ..................................... TCACTACCCTGATAGGCTGAGCGTGGAAGTGCGACCA 6339 37 100.0 35 ..................................... AGCTTACGTCATTGGATTACAATAACGCCGATCTG 6267 37 100.0 33 ..................................... GTACAGATAGCGCGTAAGTTGATGACAGCTTAT 6197 37 100.0 41 ..................................... ATCGACTAACGCCTCCCATGTATCCTGGTAGTAGATTGCAA 6119 37 100.0 39 ..................................... AGTCAGGGATACCAATGGCGATTGGCATGATGCTATGAA 6043 37 100.0 39 ..................................... AAAAAACAAAAATACCGCCCCACTGCTAATGTACGGTTT 5967 37 100.0 37 ..................................... TCTTTAAAAGCTGCCAACAACTTTAGAGGTAGTTTAA 5893 37 100.0 34 ..................................... TCAGCTACTCCACAAGGGAAGTCTAACTCACCAG 5822 37 100.0 35 ..................................... AGGGAAATACTTTGCTTACGTCATGGGCGGATGCA 5750 37 100.0 31 ..................................... AAAAATCGTTAGCCAGCAATGAAAACCCTTG 5682 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 20 37 100.0 36 GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Left flank : AATGAATGTTGTTGTGTCTTATGATATTTCAGAAGATAAACGTCGCACCAAAATTCACAAAGTTCTCAAGTCCTATGGACAGTGGGTACAGTTCAGTGTATTTGAATGCCATCTCACCGATACACAGTACGCAAAATTGCGATCGCGCTTGAACAAGTTAATCAAGCCGGAAACCGATAGTATCCTCTTTTACTTTATATGTGCCTGCTGTCTAAGTAAAGTTGAACGTATTGGTGGGGAAAAGATTCGTGATGACTCTATTTTCTTTGCCGAATGCGCGGATGGGTAGGTGTTCAAAACGAAATTAGAGGAAGTAACCTTCAAATTCGCCTGGTGCAAGAGTTTTGGGAAAAATAGCTAAGAAAGTACCCGCGCACCTTACACAGACTACGTTCTAGCTATTTTCCTCAAACCCAATGTCAATTTCACATGCTATCATTACTGCATCCGCGCTACCGAACCTTGAAAACCCAATACAAACTGTGTTTCAGGCTACCGCT # Right flank : ACTGAGATTCATGATGTCGAATTTGAATTAGACGCGATAAATCGCCGTCTCTACAAAAAATTGATTATTGTAGAGACGGCGATTTATCGCGTCTCTTGCCTTAACCGGATCGCGTCTCTTGCTCTTGCCTTAACCGGATCGCGTCTCTTGCCTTAACCGGATTGCAAAATTACATAAAAATCATCACATTCAGTAACGAAACACCAATATCCAGCATCCAAAATCCGAAGCTAACTATGGTGTTTGGAACTTTTTTTTTTAAAGGTTTGCCTCCTTGAATATCCAGCACTTGTGATAATTCAGTTGTATTCAATGACTTAACGAGACTCAAACCAAGAGACTTACTAGAAATACTTTGAGTGTAGCTGGCGTTGAGATAAGGAATGTATTGTGACTTTCCTGCAACATAAGTTTGGAAGAAAGGCAAACTTAAAACATTCATATAACGACGCGCTTGGGAAGCATCGCCAATCATTTCAGCAGGTAATGATACTTGTTGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCACTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 18361-20046 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERF010000057.1 Desmonostoc muscorum CCALA 125 contig65, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 18361 37 100.0 34 ..................................... GGCTATACAGAGCGTGCAGCACAGCAAGGTATTT 18432 37 100.0 35 ..................................... CGGTGCTACAGTAGCAGTTTATGAAACCAACGGCA 18504 37 100.0 36 ..................................... CACATAACTCTTGCCGTCGTTCATTGGTGTCTTCGA 18577 37 100.0 33 ..................................... GAAAGCTGACATATGCGCTAGAAAAAACTTTTC 18647 37 100.0 34 ..................................... TTCTACCAGTACATCGACCTGAGTCTTTAACGCG 18718 37 100.0 36 ..................................... CTGAATTTCAGCAACGCGTTAGCAACCTTGGCATTC 18791 37 100.0 34 ..................................... TGGAACCCTGAAAAACAACTAATAGAGTATAAAG 18862 37 100.0 34 ..................................... CCTTCAGAAATTTACCCGCTTGTACAATTGCATC 18933 37 100.0 36 ..................................... TCAATCAAGTTGAACCAGTGAGTAGCTTTACGACCG 19006 37 100.0 35 ..................................... TGATAGCTGAGAATCCTTTTGCTCATCTGAGTATT 19078 37 100.0 36 ..................................... ATTGGAACCCTTACGGCTGTAAGAGGGAAGCTGGAA 19151 37 100.0 34 ..................................... TTAGTTACAAAACGTGCAGCAGTGTAAGCGGTAA 19222 37 100.0 34 ..................................... TGACAGTGATAAACGCGCCGTTAAGACATCCAAG 19293 37 100.0 36 ..................................... AAGTTACTCCGATGAAAGAATAATGAATGCATTAGC 19366 37 100.0 34 ..................................... CCGGCAGGGATGGCGCGAGAATTCAAATTTATGA 19437 37 100.0 35 ..................................... AGCCTTTTTGGGGAAGATACCCAGGAAGCAAGCGA 19509 37 100.0 33 ..................................... ATGTTTTTGAAGTAGTTCCTTATACTCTTTTTC 19579 37 100.0 34 ..................................... TTGGCAATATTGAGCGCGTACTGTTAACGCAGGA 19650 37 100.0 33 ..................................... CGTTTTAGCTCGAACCGGCTTGAACATCGCCGA 19720 37 100.0 36 ..................................... TCAGCTTTTGCAGCGGCAATAGCTTTGGCGGTAATA 19793 37 100.0 36 ..................................... TCATACAAGGCATCATTAGCCTTTTGGCTTGCATTT 19866 37 100.0 34 ..................................... GGCTGGGCGGAATATCCTTTGATGGATACTGGAG 19937 37 97.3 36 ................C.................... AGCAACTTGCAAGGCTTCCACAATCGCATCGGGCAT 20010 37 97.3 0 ................C.................... | ========== ====== ====== ====== ===================================== ==================================== ================== 24 37 99.8 35 ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Left flank : CAGGAGCAGTACCTTGGACAGCAACTCAGGCACTCAATAATAGTACATTACCTTATGTTGTGCAGTTGGCGAATTTGGGAATTAAGGCATTGGAAGTTAACCCAGCCTTAGCTAAAGGTGTGAATGTGCAGAATCATAAATTAGTGCATCCTGCCGTGCAAGAAGTGTTCCCTGATTTGGTAAGTTAGAGGTTATACAGGCGAGGGTTAGAAGCTGCGATCGCTTAAATTAATGGTGGTAGCCCTCAGCAATTAGACTAATTTCGTTGCCAAATGCGCGGATGGGTAGCTGTAGAAAATCAAGACAAGCAAAAAATGGCTGTATCTCAATGTGTACAAGGTTTTGAGGACTATAGGACTTTTAAACCATCCGCGCACCTTACGGAGACTGGGTTTCAGCGATTTGCATCTGGTGTAAATACCATTTCCTGTGTTATGATTCTTTCATCCGCGCAACTGCACCTTGAAAACCGAATACAGCAAGCCTTTCTGGTGTCGGCG # Right flank : CTGAAAGAACGCCCCGATAATATGCAACTTGTCGGGGATTGCAATTAACTAAAAGGTTCCAAAGGTGATTCGCGCAAGTTGTCGAGGCTCGGCGCGAATCACCTTTTTGGTAAGAAAAAAGAGCGCTGTGTCAAAGGCACAGCCCCCCAGAGAGATTTTAAACAAAGAGCTTATTCTTGGTCTAGCTGTTCTAGACGCTCCCAGATACGGCGGTTTTCAGTTTGCAGCCCTCGGATATCAGATTGCATTTGCCTAATCTCACCAACTATCACCTCAAAGTTTTGTTGATAAATTTGAACAGTTTGCAACAGCGCTTCAGCCGTCGCCCTCAGTTCTACAACTGAAGTTCTCACTTCGGCATTTACTTCTAACTGCCTATCCAGAGCCACTTCAATTCTGTCTAGTCTGTCTGGCTGATTGGTCATCTTATCACCTCTGGTTTTATTATGCACTTTGACATTTTGTCTTTTGACGTATATCACTAATTCATGCACAATTTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAACTAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 71075-69740 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERF010000059.1 Desmonostoc muscorum CCALA 125 contig69, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 71074 37 100.0 34 ..................................... TTACTACAGTTACGATGCCGGGGATTTCGCTAAT 71003 37 100.0 34 ..................................... GACACGCGATACCGTGCAAATAATTGGGACTTGT 70932 37 100.0 34 ..................................... AAACAACCACGTCACGATCTCTTGTTTCTGTTCA 70861 37 100.0 37 ..................................... AGTAGCCATTATTTGTTATCCTTTGTTGTTTTGTGAA 70787 37 100.0 34 ..................................... TAATACGTCGTCAGTAACGACACTGAAAACGTCG 70716 37 100.0 33 ..................................... AATTTGAAGCAATCTACGTACATAATCGCTTTG 70646 37 100.0 37 ..................................... TGATATAGACAGCGAAACAACTAAAAATCAAGATTTA 70572 37 100.0 33 ..................................... TTTCTAAATCTGCAAAACTGTTGACATTTTGTG 70502 37 100.0 34 ..................................... AGAGAATGGTCTTATAACTATATAGAAACAGGAT 70431 37 100.0 35 ..................................... GAGTATTTTGTCACCAAGGATGGGCGTGTTGTGTT 70359 37 100.0 38 ..................................... ATAGTGAATCATCACCTCTCTAGTACTCACCTTACCTT 70284 37 100.0 37 ..................................... TTCTTTTACTCTTTTAGATCAACTTTATTCCAATCAG 70210 37 100.0 34 ..................................... ACCAAAGCCTGGACAGAAACCTATATCCTCACCA 70139 37 100.0 38 ..................................... GCAATGGTAGCTCCCTGGAATCTTGACGAATATTTGAA 70064 37 100.0 33 ..................................... CTGTGAGAATAAAAGTTCAGCTACGGTTAATAT 69994 37 100.0 37 ..................................... GACTATTACCCTTTCTGCTTGAAAAGGTACATCAATC 69920 37 100.0 37 ..................................... GCTGACCAGGTTTAGTGAGCCAGTTCCAGTACTGTGG 69846 37 100.0 33 ..................................... TTTATCATTGGTGACACTGGCACCGGAAAATCA 69776 37 83.8 0 ...........................A.G...TTTG | ========== ====== ====== ====== ===================================== ====================================== ================== 19 37 99.1 35 ATTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : GCGTAGCACATTCTGACTCCTGAATTCTCAATTCTGCTGTATTTTTTGTGCGCCTGCTATTTTGGTAAAGTAGAACTTATGGGTGGTTAACCAGTGCGCTACGACTCTATTAGGACTAGCCCTTTCAAGGTGACCAACGAACATACGTTGTTTTGGTGCTAGCATCTTGAATCATCCGCTCACATTTTGGGCTTTTTGAAGATTGAAATAACCAATCTTCGTTCCAAATTTCACCACCTTGAAAAGGCTAGTCCTGTCTATTTTCTTTGCCAAATGCGCGGATGGGTAGGTGTTAAAAATAAGATTTGGGGAAACAAGCTTCAAAGTAGGCTGTAGCAAGAGTTTTGCGATAAATAGTTGTGAAAGTACCCGCGCACCTTACACAGACTGGGTTTTGGCTATTTTATTAATTCCTAATCTCAATTTTTCATGTTATGATTAGACCATCCGCGCTACAGAACCTTGAAAACCAAATACAGACTGTGTTTGCGGCTACCGCC # Right flank : AAAAATAGTTATAGCAAAAGCCTTGGTGGTTAGGACATTAACAGATGATAAAACCTAGACACAAAAAGACTTTTCACCCAGTCACCAGTCCCCAGTCCCCAGTCTCTTGCTATAGCTGTGATTTTAGACACCTGTTGATCCCCCCTAACCCCCCTTAAAAAGGGGGGAACCGGAATTAAAGTCCCCCTTTTTAAGGGGGATTTAGGGGGATCTAAAACGTTTTGTTACCGAGAAGAGGACTTTTCAAACAACCTCTTAGGAATTGAAACATGGGAAGCGATAACAAAGAAGAAATCAAAGAAAATTTTACGGACAACTGAAATCTTCTATGTAGAGCTTTCGTCCTACAGACCACTTGCTATCTGGAACTTTTAAAAAATCAAACCATGTCTGTTGACCACCCCCAGGATAGCAGCTTGGAGGGTTTTGAGGAGCAGCTTTACCTAGATAAACAGTGGTTCCTGCTGGCAAAGTTACTCTTTCTATAAGAGTAGCTTTAT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 1 13161-16278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERF010000082.1 Desmonostoc muscorum CCALA 125 contig103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================================================================== ================== 13161 37 100.0 37 ..................................... CGATCGGTTCCTAGTTTTAACTGATGTATCTCATCAA 13235 37 100.0 36 ..................................... AGGAGAGTATCTGGGAATCGCAAGACTGCTAGACAG 13308 37 100.0 36 ..................................... GAAACCTAAGCTCATGCCTGAAAGAGCAGACTCTTG 13381 37 100.0 34 ..................................... TGCGTACCAAAGGCGGGATGATTGGTTGGCATTT 13452 37 100.0 40 ..................................... ATGTCCACCGTTGTGTGCATCGAAGAATTCTTGCACTGAA 13529 37 100.0 38 ..................................... TTGTGTCCCTTGTTCCAGAGCAGTTGCTGTTCACTGGA 13604 37 100.0 35 ..................................... AACTCAATTCGATGCCCCAATCAGCGCAAATCTAT 13676 37 100.0 34 ..................................... TAGTCGTTGGAATCTTTTAGCCCAGCTGACAAGT 13747 37 100.0 38 ..................................... ATTAGGGGCACTAATGGTCAACGGGGGATAAACAGGGT 13822 37 100.0 42 ..................................... TATCTTTTAAGCTCAGTGTGAAATGGGTTGCCTTTTCAGGTG 13901 37 100.0 36 ..................................... ACTCTTGTCAACAACTCCGTATCAGGTCACACCGTC 13974 37 100.0 37 ..................................... CGTTTTACCGACAACCGCTTGCTTGGCGGATTTCACC 14048 37 100.0 37 ..................................... TTCCATTTTAACTCCTAGAAAACCTATGCCAATGGTG 14122 37 100.0 37 ..................................... ATAGCTAAAATCAGAATACTACGTCTACTGTTCTTTG 14196 37 100.0 36 ..................................... TACGTATATGCTGTAGTTCCACAGACACTTTTAAAC 14269 37 100.0 34 ..................................... AACTTATTACACTTGTCTTTAAAACTATATAGAA 14340 37 100.0 38 ..................................... TACCAATCACCATTGTCAAATTCTAATGTTTCTCTAGT 14415 37 100.0 36 ..................................... ATCAGATATGACTATAAGCTTTACATCAGAAAGGTT 14488 37 100.0 38 ..................................... CTTTTCCACTTTTACAGTGGGAGTACAAAAGTTATGAA 14563 37 100.0 35 ..................................... CTGCCAGATTTTAGACGGCTCTAGGTACAACTGAT 14635 37 100.0 41 ..................................... ACTTACGAGGATATCAATGGCAACCTTCAGGAGAAACAAGT 14713 37 100.0 43 ..................................... CCGGGAGTAGCAGTAGGACTGGATTTGGCGGGAAGACTCGTAG 14793 37 100.0 38 ..................................... AACCTGATCGGCATTAACTACGATATCCAACTTCATGT 14868 37 100.0 36 ..................................... CTAATCAATCTCTTATCTTTGTTAATCTAGAATGAA 14941 37 100.0 40 ..................................... TTTTGTTAACAAGCTAGTAGATAAGTTACTAGCTTGTTGC 15018 37 100.0 37 ..................................... AACTCTCTAAACTCGTGTGAGTTCGCGTTTGCTCTAA 15092 37 100.0 39 ..................................... TCGCATTTGGACTAAGTTGAATCCCTGTTTTCTCTGTAG 15168 37 100.0 34 ..................................... CTACTATAGGTTTGTGAATCAACGATCGCGTTAA 15239 37 100.0 40 ..................................... CAAATTTCATATTCTTTTAATCTCCACTCGTCCTGATTCC 15316 37 100.0 34 ..................................... AAGTATATACTGTTCGATTGATTTAGTATGTCAG 15387 37 100.0 34 ..................................... ACCAATTGTTCGATGTTGTATGCAGATGCTTTTG 15458 37 100.0 35 ..................................... ATTAATTTGGATAGTAATTTTAATTTGGGCACATT 15530 37 100.0 39 ..................................... TCCCCAACTACCACACATTAAAACTATCCAACCCTGGAA 15606 37 100.0 35 ..................................... ATATTTCCCTTAATTTCTGGTTCAAACTTCTCTCC 15678 37 100.0 35 ..................................... GAACCGTTTCTGTCACAGTCGTTATCAAATTCAGA 15750 37 100.0 35 ..................................... AGTTCATAACTCGTCTCCTATATTATTTATTGTTA 15822 37 100.0 35 ..................................... TTGTATACTGATATCGTAAGACCGCCACGCAATCC 15894 37 100.0 38 ..................................... ATCAAAGATGGGCAATGGTATGAGCGCGGCAGAATGGG 15969 37 100.0 36 ..................................... ATTCTACTATCTTAGGATTAGAGTTTGTTTCATAAA 16042 37 100.0 90 ..................................... TATTCCTTATGTTGGGCTTTGGATGCGGATTACAGCGTTTCCAAAGCTGAAACAGCGATCGCCTTGCAGCGACACAACAAATCTCAGAAG 16169 37 89.2 35 ........GA..A.........T.............. CCCTAGCCAAGGGCTACAAGTGGGAGGGGTTTTGG 16241 37 83.8 0 .........CT.A.......TC..............T | T [16275] ========== ====== ====== ====== ===================================== ========================================================================================== ================== 42 37 99.4 38 GTTTCCAAAGCCTATTACCCCGCAAGGGGACTGAAAC # Left flank : TCTGGGATAGCGAGTACACGGTTGGTTTGCAGCACCTTAAATCTTACAATTACTTGCCTGCCGAGTGTGAGCAGATGCAGGTGATTTGCGATCGCATCAGTCGGGTGTATTCTGATTCGCTAGAGGAGACAGTCAAAAGTCTCTTGCAGTCGTTGGGGAAGGTGAATCGGGCTTATTTAACGGCTGTCGAAGAGAAATTGTTGAGTTTGATTGAGCGAGAATACGGGCTTATAGATCAATCTCCACAAACTCATAGACAATAATAAATACACATCTTATGATTATGGAATCAGTTTGATATTTGGCAAGTCGAAGCGGGGTCAAAAACCCTGGGGATCTGCCAAAATCGCCAGAACCTTGACAAGTAAATAGTTTCACAGTTTCAGTACTAAGGGAAGTTGAGAATTAGTCGCAATAAGAGCGGCTGAAATCGACCTATTTTTGAGGTTTGCCAAAATGCTTCCCAGGAAGCCTGCTCTGTAACAGTTTCAGACCGAGCC # Right flank : TTAAAAGAACCGATGCGATCGCTTGACTTCCCCGTTAGGGGATTAAACTACAATCAAATTCTCAGCCTTCGTTGCCAAGTTCTTGAATTACTCTTGAAAACTCTTGAGTTAGAAAGTCACAACCAGTTGCATTATAAACCTCCTGCAACTGTTGATAAAACCATAAAGTTCCTTCCCTACCAGTTTTAAACTCTTTCCAAATACTGCTGCCATGTTGTCGGAGGTCTGCCAACAATGACCTTGCATTGTGCAGCTTATCTGCTAAAGACACCCGCCGGACTGAGGCTGAAGCATGATACAGGTTCTCTAAATACCTTTTCTTTCGCTCTAGCCAAGGTGGTTTGGGGTAAGTGTCGGATTCGGTACAGCCATCCACTATTGCAACGACTGTCTCACCAAAAAGCTGGTGTATTTCCTCACGTGTGGATTTACCGCCTTGGTCTTCAACTGCATCATGCAAAAGAGCAGCGATCGCTTCTTCTTGGGTACCTCCAGCTTCT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAAGCCTATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 46352-49724 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERF010000082.1 Desmonostoc muscorum CCALA 125 contig103, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 46352 37 100.0 36 ..................................... CCAGGAAGTATGGCGTAGAAGGTATCTATCATACTG 46425 37 100.0 36 ..................................... AGGAATATACGCCTAGCAAGGCGTCATTCTTTTCAT 46498 37 100.0 40 ..................................... TACCTTTAGCACAGGGTATGGATTGCAAGGAAGACAAGGA 46575 37 100.0 36 ..................................... ACGTGGGTCATCCTTCTTGAACAGGAAGAATAAACA 46648 37 100.0 38 ..................................... TGGCTTGGACGGACTTCTACAGATAATCTATCGGGATA 46723 37 100.0 35 ..................................... AATACGGAACATCCTCTGTCCAATTACCAACTTTG 46795 37 100.0 39 ..................................... AGAAAATGGAATGGCAGGATATTAGGCTGATTCTAGAGA 46871 37 100.0 40 ..................................... AAATACGACATGAATTACGACGTTCTAAAAATAGAGGGGT 46948 37 100.0 37 ..................................... TCGCGGTATTTATCGTGTGTCGTTGCAGGTTTCCGAT 47022 37 100.0 37 ..................................... GAGTCTTTAATAATTTCTGCTTTCATATACAGTTACC 47096 37 100.0 36 ..................................... TACTATAGATATCTCTGTCATAGTTGTGAGAGAGGT 47169 37 100.0 38 ..................................... GCTTCAGATTATTCTGAGAGTCTACTACAAACTCTCCT 47244 37 100.0 36 ..................................... GCCTACGAGCTTTAGCTAAGTCTTTTAGCTTCTCTT 47317 37 100.0 37 ..................................... AACAAGACATTACCTAATCCAAATAGATTGATTTTAC 47391 37 100.0 42 ..................................... CTTTTTGGTACCCTTTAGGACAGTGGCGGTCAGCCGACGCAA 47470 37 100.0 36 ..................................... TATACAGCAGACGATGGAACTGACTTTGCGCTCCTA 47543 37 100.0 39 ..................................... TAAACAAGTCTAGTCCAAGTCACCCGACAAAAGTTTCGG 47619 37 100.0 34 ..................................... ACTCCATTCTTCTGTAGCACGTCTCCTACTCTTA 47690 37 100.0 36 ..................................... TACCTGGGCGATTTCTAACCCGTAGGAAAGAGCAAA 47763 37 100.0 37 ..................................... ACCCCGGCGATTAACAAAGCAGCCCAGGTTGCCAGAG 47837 37 100.0 35 ..................................... TCGAATCTCCCCCAGAGTTGACCAGCATCCTTAAC 47909 37 100.0 36 ..................................... TCGTGAATTTTTGATTGAATCAGAAGACCTAGAAAC 47982 37 100.0 38 ..................................... GAGAGAAGGGGAAAGGAGTAAACTGGCTTCGTCGTTGG 48057 37 100.0 38 ..................................... AACATCCCCAATTTTGGGCTTGAGCGCATTCCTCAGTC 48132 37 100.0 38 ..................................... TCTCATCAACTACATAATTACGATTGCCATTTATCCAA 48207 37 100.0 35 ..................................... TAGCTTTGTTTTGCCACAGTTTCATTAAGATGTGT 48279 37 100.0 35 ..................................... TTCTCAAAACGTTCGTTAGAATGCATCGATTTTTA 48351 37 100.0 36 ..................................... ATTGTTCAGCAAGTTTAATAGCAGCGTCAACACCTG 48424 37 100.0 46 ..................................... ATTCATGTATTGCTGCCAACAAACTATCGTAGCGAGCGCTAGAAGT 48507 37 100.0 38 ..................................... CAGAGAAGGTAAGTCCTCGGCTTGCACTCGCGCTGATA 48582 37 100.0 40 ..................................... TCCATCCCAAGGATTTCATTACTAGGCGATCGCCTTCTGA 48659 37 100.0 39 ..................................... GCCATCGCCTACAAAGCGAACGGATTTTTATTGTTCAAA 48735 37 100.0 37 ..................................... GTCCTTAGGGAAGAATTCTGTCAGGCTTCTCTTATTT 48809 37 100.0 35 ..................................... CCCTGACTACCTTCCAGCGCTTGAATACCACCTGA 48881 37 100.0 37 ..................................... GTGTGTAGGCTTGCTCACCGTCCAAACTATCAGTTAC 48955 37 100.0 36 ..................................... GAAATCTCAAGACTTGACAAAGTTCTTGGCCTAATA 49028 37 100.0 35 ..................................... ATGAGTCTTCCATCGCCGGAATAAAAGCCTCTAGA 49100 37 100.0 39 ..................................... GAGCTTTACGAACTATATTCCGCTTGTCTTCATCTGAGG 49176 37 100.0 37 ..................................... ACTCAGTAGCCTTATTCAAAGTCGAAGTCTTCTCTGG 49250 37 100.0 37 ..................................... ATCACCATCATTACCGATCGCCTCGTTAAGGATATTG 49324 37 100.0 39 ..................................... GATAACATAGTCTGCTATCTTTAGGACGAACTATCTGAC 49400 37 100.0 34 ..................................... AAACCTAATCGTTCTAGGGCACTGTTGATATAAC 49471 37 100.0 35 ..................................... TATGGTTCTTTATTCTGCATATTAAACTCCTACAA 49543 37 100.0 33 ..................................... AAGCCAGATAGCACGAGTGATTAACCCTCCTGC 49613 37 100.0 38 ..................................... CCAACTTGCTAACCAGTACCAACCCTGCCCAAGTGTAG 49688 37 89.2 0 .................................CCGA | ========== ====== ====== ====== ===================================== ============================================== ================== 46 37 99.8 37 GTTTCCAAAACCTATTACCCCGCAAGGGGACTGAAAC # Left flank : TTATTTAATAATTTATGATCTGCCTGATAACAAAGCTGCAAATAAACGTCGCACTCGTTTACATAAGATGTTGTCTGGTTACGGAAAATGGACACAATACAGCGTTTTTGAGTGTTTTTTAACAGCAGTACAATTTGCTACCCTCCAAACCAAGATAGAAAAACTGGTTAAGTCTGAAGAGGATTCGGTTAGATTGTATATACTTGATGCGGGTGCAATCAAACGAACAATTACATACGGGTCTGAAATTCCTCGACAAGAGGAAACAATAGTCTTATGATTATGTAATCAGCTTGATGTTTGGCAAGTCAAAGCGAGGGCTAAAACCCTGGGGGATCTGCCAAAATCGCCAGAACCTTGACAAGTAAATAATTACAGCGTTTCAATCTTTCGCGAAGTTGCAAATTAGTTGCAATAAGAGCGGCTGAAAATGACCTTTTTTTTCGATCCGTCAAAAACCTTCCCAGGAAGCTTGCTCCGTAACAGTTTCAGATGGAGCC # Right flank : AGATACGGTTACTGCGGCAGACCCCCCATAACAGACTTAGAAAAAATGTCACTTTCTTTGCCCCCAGATTCCAGCCTTTGATGCGCTCGCCAACCTCTGGGCATTCTCAAAAGCTATTTGATTTGGGCATTCCACTTCACCTTGCTGCGTTCTAGCCAAACCACTCTTGAGCAATTCTTCTTGAAAACTAATCTCAGCCTCACCTTGAGCGTAAACCATCACCTCTCCAACAGTACGCCCCTGCTCATCTTTACCCACCGGAATGACCATCACTTGGCTATCATTAGTTGCAACAAGCGATCGCAGTTTCTGTTTTGCTTTATTACCAAATGGTTGTCCTGTAGCTTTATCGTGTCTGACTTCAGGTGCATTAATTCCACAAAGCTCAACTTCCATTTGGCTGCCATCGGTTTGGCGGACTGTTATACTGTCGCCATCTGTCACTTGTGTAGCCGTCCATTCTTGGCTGAGTGCGATGGATGGCTGGTTAGTTTTTTGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAAAACCTATTACCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 36742-37073 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERF010000115.1 Desmonostoc muscorum CCALA 125 contig195, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 36742 38 100.0 33 ...................................... TATGACAGAACAACCAATTTGTCAGCGTTCGGG 36813 38 100.0 33 ...................................... ATCATGGGATTAGCTGATGCTACTTGTTCGCTA 36884 38 97.4 38 .....................................T TTAACACCGTCTCTACCTAACCAAAATTTACCATGAAC 36960 38 100.0 38 ...................................... CAGTGTTTGCTGATATAAAACGTGTTGTGACAATCGAA 37036 38 97.4 0 ....................................A. | ========== ====== ====== ====== ====================================== ====================================== ================== 5 38 99.0 36 GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAGA # Left flank : ATCTGGGTTAGTTTGACAGTTGGAAGACTGTTATGCTTTCTGACCCTGGTAACTGCCCGCTCTTGATGCTGCTGTCTAGCTTAACTAGACAGGATATGCCTTTTTTTGTAACTTGGATAAACCAATTATTTTCCGACCTGTTCAGCGACGAAAAAAGAAGTTTATACAAGGATAGCAAAATAGGGACAGGTGCGCTCCCAGCAATAAAGAGTAAGGCTTTTTGCCCTAGCCGTTTTCGTAACGGTGCGGTTTACCGCAGTGGTGGTTACTGAATCACCCTCTTCGTCGGGGGAACCCTCTCAAATATTTTTTGGCAAGGCAAAGCGTGGGCAAAATCCCTGGACTCCCGCCAAAAACTGAAAACCCTTGTCCAGCAGTAAATTCAGAAATCAGACTGTCAGTTAATTTAGTTTTTGAATTTTCAGTTGGACATGCTTCAAAGCAGACCTGACAAAAGTGTTTGTGGACAGCTTGCAAAACAAGGATACTAGACGGGTCGA # Right flank : AATATTTCATCATTACAATTTTATTAAGAGGGTTGAAAGGCGCACTTCGTTCGGGATTATCCTGAATATTTGCAGTTAAACCATGTCCATCTTGAAAACTGAAGGTTTTTAAACTGCCTGTTGATACATGTAGCTTTTGGTATATAAGCTTTTCAAGCAATATTGATTGCAAACACCACAGGTTTAAACCTGGATGAAGTTTATATTAGACTTTGGGGAAGCTTTATTTTGAACCAGCCCCAAAAAAGACAGTCGGCGACATTAATTTGTTAACGGTTGCAAAAGCAACTTTGATGACATTAATTTGTTAACAGCGATATTAATTCGTTAATCACGACATTAATTTGTTAACGACGACAAATAATTAGTTATTCGACAACACAAATCGGGATGACTGGATTCGAACCAGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCCACATCCCGCCATAAAAACGGCACTATAAAACCAAAATATCACAACCCGT # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACAACCATCCCGGCTAGGGGTGGGTTGAAAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.00,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 51667-52934 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERF010000021.1 Desmonostoc muscorum CCALA 125 contig22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 51667 37 100.0 41 ..................................... AAATACGTCATAAAACACGTCATTGAATACGACGTTCTAAA 51745 37 100.0 37 ..................................... GCTGGTGACGCCCTTGGAGTAAGCTTCTGCCAGCACT 51819 37 100.0 38 ..................................... GAAAGTGTTGGCGGTTACAAGGTGAGTCAGCGCAATGC 51894 37 100.0 37 ..................................... ATGGTGTACCAGTGTTCATCGCAACGTACCACGATGA 51968 37 100.0 34 ..................................... GTAAACAACGCACAGTATAAGGCTTTGAACACGA 52039 37 100.0 33 ..................................... GAGAAGCGTCTACAGAAGCTACAAGGTTTTGCA 52109 37 100.0 34 ..................................... GAAAATCTGAAAAATTTGAAAGCTGATTGCTTTT 52180 37 100.0 35 ..................................... AGTCTAACGGCTTAGAACGCCTTGAAACCTTGAAA 52252 37 100.0 35 ..................................... ATGACGCACCTAGAACTCATGTAAGGTGGCAGGGC 52324 37 100.0 35 ..................................... GGGTAAATTCCCTTTGGCGTGGGTGGTGTATTTTT 52396 37 100.0 35 ..................................... AACTCTTAAATCTTTATTGGCTTCTGAGGAGCAAA 52468 37 100.0 37 ..................................... CGGTAGGTTTTCAACTAAGAAATAAAATTCTTCGTCC 52542 37 100.0 33 ..................................... AAAAGCCGCATACACCCTCGACGAAGCTACAAA 52612 37 100.0 34 ..................................... GCATCATGTGTCAACAACTATCAGAAAGTCAAAC 52683 37 100.0 35 ..................................... CTTCGATAAATTGCTGGCGGTATTGCCAGTAGATT 52755 37 100.0 33 ..................................... CGCATTTTAAAGCTAGATTTGCTTATGCTTTTA 52825 37 100.0 36 ..................................... ATCGAGATTTTTTTGGAAGAGGATATTTAACTTTAA 52898 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 18 37 100.0 35 ATTGCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Left flank : CAGGACATAGCGGAACTACTGAACGCATCCTTCAAAATCTACACGAATTCTTAGAGCGATCGCTCGGACACCCTTATACTTTAAAGGTGATTGATGTTTTAACTCATCCAGAACAAGCAGAAATTAATCAGGTTTCTGCTACTCCTACTCTTGTTAAGGTTTGGCCTCACCCAATTCGCCGAATCGTTGGAGAGTTGGATCATGTAGAAAAAATTTTACAGATGTTGGCTACCAAGGAAACATTTTAAGTTTTATCAGGATTTCTTTGCTAAGTGCGCGGATGGGTAGGTGTTGATGAGCGGGTGACTACAAAAATGGCTCAATTGCCCTCTGTGTAAGAACTTGAAGCCACTAGTATCTTTAAATCATCCGCGCTCCTTACTGAGCTTAGCTTTCAGCGATTTGTATCTAGTAAAATCACAAGTTCTTGTGTTATGATTTTCCCATCCGCGCAACAGAACCTTGAAAACCAAATATCACAGTACTTTCAGGCGACAGCC # Right flank : CGACAAAAAAATATTCTCTAATGGCAAACAAAAAACTCGCGATCGCATTTTTCAGGTTAATTTAATGTGTGAAGGATGCGATCGCGAGTCACAAAAAGTAGTTATCTAGGGGGTTGAAGAATTACTAGTGGCCACTGCCTCGTTTAAAACTAACTCTGGTTGTGGTGTTTCCTCTTCTTCTTCTGGCAAGCCGTAAATTGACCTGTACAATTTCACGTACTGCTTAGCAGATTGATACCAGCTAAAGTCTTCACTCATACCCCGTTTTTGTAATTCTTGCCATTGGGGTTTGAAACGGAAGCCTTCCCAAGCCCGAATCATACAGGTGAAAAGGTCTAGCGGTTCGTAGCGGTCAAAACAGTAACCGGTGCCTGCTACATTTTCGGGGTCGTGGTGTGTTACGGTGTCAACTAATCCACCTGTGCGGCGGACAATGGGGACGGAACCATAACGCAAGGCCATCATTTGGCTAATACCGCAAGGTTCAAAGCGGCTAGGCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTAATCAAAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.27 Confidence: HIGH] # Array family : NA // Array 1 43312-43488 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERF010000022.1 Desmonostoc muscorum CCALA 125 contig23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ========================================== ================== 43312 32 100.0 39 ................................ TTAATAAGTTAACTCTTCTTTGTTACCAAAGGCTTGTTT 43383 32 100.0 42 ................................ CGACACTACTCTGTGGTTTGGGCCTAACTCTCTAGGAGGTTT 43457 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ========================================== ================== 3 32 100.0 41 CAATCCCCGTTAGGGGAAGTGATTTGAGAAAC # Left flank : ATCTGCCCAGTTATGTATTCCTGTTACCTTTCGGTGTAGCAGCATTCGCTTTTTGCAGCATCTTACACCCACTGGGGAATTAAAGCGAGATTACTCCCATCTCTACTCGTAACGTCTATCTAGCTACAAGACCCCATTGGGGTTACTTCGTATCACACGCCAGAGATGCAACTAGCTTGGGTTCCCTCTATACACCGGGGGTTTTTGGTGTCTACTGATTCTGAGGATTGGGCAGAATCACTTTACCCCTTTTACCGTCTCAGCCGTTTTCGGTAATTCCTCTTCACGATGCCTCAACGAGGATTCACATCTGTTAACCCTGTCTAGTTTTACCCTAGCGCTTCACCTCACTGTGCGGCTTGTTGATGTCGCGCATTTTACCCTCTAGCTTTGAAACATCGCAGTTACCCGCAATGCCCCTTCGGGCGGATACTGGCATTTGACACTTGCCATGAGTTTTTCTGAGGAACTCACTCTCTACGTGCAACCGATAGTCGCAC # Right flank : CCCCACCCTTTTAGAAGCCTTATGGAGAGAGGGTTACAGATGCCATTTTCGGCGGGGTCTGATTTATCTGTCAATAAGCTGGATTTATTGAGAATTTAGTGGTGTAAATTCTTTTCAAACTCTTACCCTGCAAGGCATCGGCGGGGTTAACGAAAAAATCAGGGTTTTGGCGATCGCTCTACCCCCGCTAAAAATTTGCGTATATTAAGTAAAAAGACATACTTTTACTTTCGCTTGGAAACGTGATATTAAGTTTTCAAGGTTCTGTTATGCTGCCACAAAGTATAACAAAGTACTTTGGACTTTTCACAATCTAGACCGCAAACTTAATATAACGAAATGAGAAAGCAAACTGGGATTTGAGAAAGTCAAATGGCATTTTGAGAAAGTCAAAGCTTGTTTTACTTGCGGAAAACACCAAAATGAGAAAGCAAACTGGGATTTGAGAAAGTCAAATGGCATTTTGAGAAAGTCAAAGCTTGTTTTACTTGCGGAAAACA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATCCCCGTTAGGGGAAGTGATTTGAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.70,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 16963-16207 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACERF010000002.1 Desmonostoc muscorum CCALA 125 contig2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 16962 36 100.0 37 .................................... ACCCAGAATATTGATGACGTATTAAATGGCAAAAGTA 16889 36 100.0 34 .................................... ACCGAATTTAATGGTGAAGTGCAAGCTATCTTGA 16819 36 100.0 36 .................................... ACAGCAGGCATATGAATTACACCAACCACGGGTTCG 16747 36 100.0 32 .................................... ACGGCGGTCACCACAGTGACCTGATGCGGATG 16679 36 100.0 34 .................................... TTCATTGCCACCACTTCGCCAAGTTTGCTACCGT 16609 36 97.2 36 ..........G......................... ACAAATCCTAGACCAAGCCCTTGATTGGTACCTGTA 16537 36 97.2 34 ..........G......................... CTTGCGTTCGGCGACACAGAATTTGGTATGACAA 16467 36 94.4 40 ....A.....G......................... TTGAAGCCGTAGCTTCATCCATGAAGTACAGCGATCGTCA 16391 36 97.2 38 ....A............................... GAGAACTGGTGTTCTTTAAACTCTACCTTTACTGGAAT 16317 36 91.7 39 ....A.....G..........C.............. GGATATGGTTAGAAGTGTACATCAGGTCTATACCCTGGG 16242 36 86.1 0 ......AC.T..C........C.............. | ========== ====== ====== ====== ==================================== ======================================== ================== 11 36 96.7 36 CTTTCCGATCACATCGCCCCGAAAGGGGATGGAAAC # Left flank : CCGCTAAAAAAACAAATGCTGTCGCCGAAATAACAAATGCTGTCGCCAAAATAACAAATGCTGTCGCCAAAATAACAAATGCTGTCGCCGAAATAACAAATGCTGTCGCCAAAATAACAAATGCAACCGCAAAAATAACAAATGCTGTCGCCGAAATAACAAATCTACTCACCAAAATTTAGCTCTTGACTCAAACCCTTTTAATTACGAATTACGAATTACGAATTAGTAATTATGTCCAAAGAGGTACTCTTCTGTATCAAAAACTTGACAAGCACACATAACACATTTTATTGTTTAACGATGTGTTGAAACTCATCGACGCATCTCGCCCGAACCTTGAAAACCGCATAACTTCGTTGACATGCGTCGATGCCTTGTGCAGTAAGGCTTTCAGGCTACAAAAATGACGATTTTTTGAAGATTTTTTGTCCTCATCAAGAGATGCGTCGATTAGGGGGTCTGAAACCCGCTCGTAGTAAAGTTTCCAAAAGTGAACT # Right flank : ATAAAAGCAATCCCAGGCTTTCCCTAACGGGGATGAAAACGTTATAGAAACATGATTAATTGACTACTGTGCGTAATACGACGCTTGCCGAAGATGACTGCAAAGCACTACCCTGGAAAACTTAAGCAGTTAGCATTTTGGACAAATGAAAAATTGTTTAAAACTTACCTTTGACAGCGGACAAACAGCATTAGCTATTCGAGTTAATCAGCAAGCAGAATTGCCAAATACTCTAAAGCAAATAGGACTTAGTGATTCACGTCCTGTTTTAGTAGTGGTGGGGGGTGCAAGTAACATCAGTGAAGCCGACTTTCTCCGCATTCAACGGTTGTTTGTAGAAATTTTAGCCCCCATCGCCGAAACTTTGGGCGCTTATGTCGTCGATGGAGGTACGGATGTAGGAGTTATGCGATTAATGGGCGTGGCCCGTACCCAAATAGGTGCTAAGTTTGCTTTGGTTGGTGTGGCGCCTGAAGGGAAAGTGGCTTTACCCAATGAAT # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGATCACATCGCCCCGAAAGGGGATGGAAAC # Alternate repeat : CTTTCCGATCGCATCGCCCCGAAAGGGGATGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.60,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //