Array 1 26579-25025 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKUK01000004.1 Streptococcus agalactiae strain 7B18M NODE_4_length_122288_cov_63.3731, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 26578 36 100.0 30 .................................... CAAATTATGGAGAATTATTAAAAAGTCACG 26512 36 100.0 30 .................................... TGCTCTATCCAGAATCAATCCCGAACGATT 26446 36 100.0 30 .................................... AATATTTCCCAAGCGAAACACCGATTATTT 26380 36 100.0 30 .................................... TAGCTATTTCTTCTTGCGTCATTGACACTT 26314 36 100.0 30 .................................... CTAGTGGACTACAAGTTAGGAGGATAAATT 26248 36 100.0 30 .................................... CAATATGACATTAGCTTACTTCACAAAATG 26182 36 100.0 30 .................................... CATAAATTGTACTTTTGTACTTTGGCAGTA 26116 36 100.0 30 .................................... GTTCTAGAAGGCCTCTATCGAGATTTCTTA 26050 36 100.0 30 .................................... TCTGACACCTGTCGAAATCAGAAAAATTTA 25984 36 100.0 30 .................................... GGGTTTCCAGACCATGCGCCACTAGAGATA 25918 36 100.0 30 .................................... AATCAAAAAGATGCTTTAAAGATTGGTGTT 25852 36 100.0 30 .................................... CTTGACCCTAACAATGATTATAGCCATAGA 25786 36 100.0 30 .................................... TGCTACAGGTGGTTACTTAGGTGCTGGCTT 25720 36 100.0 30 .................................... ATACAACCATTGATCTTGTATCAAAGGGTT 25654 36 100.0 30 .................................... TTCTGACCCCTCTCCTTTCCACTCCCACTT 25588 36 100.0 30 .................................... TACACGCTTGTCAAATTCAGCTTGTTTTTT 25522 36 100.0 30 .................................... TCGATAGAGAATGTGCTATTTTTTGTCAAA 25456 36 100.0 30 .................................... TAAAAAATACCAACTATCAAAAGTGATAGT 25390 36 100.0 30 .................................... AAACCACTTGATGCTGTATCTCTCATAAAA 25324 36 100.0 30 .................................... ATTGTGATACAGATAGTTTATACCTAAAAA 25258 36 100.0 30 .................................... TTATTCTCAACAGTAGCTAAAGTTGCTTTT 25192 36 100.0 30 .................................... AAAAAGAGCCAGAAACTCAATCAGAAGAAA 25126 36 100.0 30 .................................... TGGTGTTGGCTGTTCTGGGATGACTACGTT 25060 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 24 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : TTTAATATCGTCTATATAGATTCCTGGACGGTTTTAGAGCTGCGCGGTTATTATGCTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTAGCAAGCTAACGAAATCATCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATATAGAGTTGTGTCTATTAGTAGAAAATTCGAATTATTTTTCGGATTCAAAGAGAATGTGTCGATAGAAGAGATATGAAAGACTATAATTCCAACCTTATTGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTTGCAAGCTTACAAGGAAAGTAGTGGAGAACCTATCCATAATCAACTAACAGCTATGATGGATCTCACCTATTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //