Array 1 43115-41958 **** Predicted by CRISPRDetect 2.4 *** >NZ_AAJQ01000007.1 Streptococcus agalactiae CJB111 s_agalactiae_cjb111_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 43114 36 100.0 30 .................................... AACATTAGCCTTTTCTAACTCTTCAGCTGT 43048 36 100.0 30 .................................... ACATAACGTTCAAAAGTTTCCACTAATAGC 42982 36 100.0 30 .................................... TCAAACAACATTGGTGATCTTATTGCGGTA 42916 36 100.0 30 .................................... TTATTTAAGACGTGATTTAATGTTAAAACT 42850 36 100.0 30 .................................... CAAACTATCTTGATTATAAGTGGACTGATA 42784 36 100.0 30 .................................... ATTTTTACACGAGTGCTAGAAAACGGGGCA 42718 36 100.0 30 .................................... ACATTTGTTAAATTTGAACTTACTGGAAAT 42652 36 100.0 30 .................................... TCCAAAACAAATACGAATGCTTGAGCGATA 42586 36 100.0 30 .................................... GATTACCTTAGATGATGTTCTAATCGGTAA 42520 36 100.0 30 .................................... TTAACAGTTTCAAGTCTGTCTTGTTACTTA 42454 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 42388 36 100.0 29 .................................... CCAAAACAAATACGAATGCTTGAGCGATA 42323 36 100.0 30 .................................... ACTCTAAATGATAGTTATGAGTTAAATGTT 42257 36 100.0 30 .................................... CAAATTACAGTTTCGACTGATTATGGAAAT 42191 36 100.0 30 .................................... ATATGTTCCACTCTATGAATTTAGGCTCAT 42125 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 42059 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 41993 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : AAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //