Array 1 185-2652 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLF01000208.1 Streptomyces durbertensis strain DSM 104538 NODE_208, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 185 29 100.0 32 ............................. CGGCGATACCGTGGCATGGACAGCACCGGTCA 246 29 100.0 32 ............................. TGCGGGAGCGGAACGAGCGGTCCCAGCGGGAG 307 29 100.0 32 ............................. CAGCTCATCGACACCATCCCCCTCACCCCCGC 368 29 100.0 32 ............................. GGGCGGCTCATCGGGCTGATGGCCGCCGCGTC 429 29 100.0 32 ............................. GGCGCGGGGCGGGCTCGGAATGAGCCCGGAGA 490 29 100.0 32 ............................. CAGCGGTGCAGGGGCACCCCGGAGGACTCCCG 551 29 96.6 32 ............................G GGTGTGGCGGCTCGCGCTCGGGAGATCAGGGG 612 29 100.0 32 ............................. CGCCGGTCGCAGTTTCCGGGCGGAAACCCGTG 673 29 100.0 32 ............................. GGCCACCCACTCGGAGAACAGGACCGGTACCT 734 29 100.0 32 ............................. TACGAACCGCCCACCGTCGAGCAGGAGCAGGA 795 29 100.0 32 ............................. CGTGCCTACCGGATGCTCAAGATGGAAGGACT 856 29 100.0 32 ............................. AGGTCATCCACCGCATCGCCTCCGAGTACCGC 917 29 100.0 32 ............................. ATGTTGATGACGTCCTCGAAGCGGATCTCGTT 978 29 100.0 32 ............................. GTCGACCACCTGGCGGTCAGCGCCGGCGGTGC 1039 29 100.0 32 ............................. GCCTGCCGGATCTGGTCGACTGCGCACGTCAC 1100 29 96.6 32 ............................G TCCGGCGTGGCTGCCTGGCGTTCGGCGCGGGC 1161 29 100.0 32 ............................. CTCGACGAGGTCAAGGCCGTCGCTGAAGACGA 1222 29 100.0 32 ............................. GCCGAAGCCCGCGACGCCCGGCATGCCGCACT 1283 29 100.0 32 ............................. TCGCGAACCGTGTCCAGAGCGGCACGCGCCAT 1344 29 100.0 32 ............................. ACGTTCTGGCAGTACAGGTCCTCACCCGCCGG 1405 29 100.0 32 ............................. CGCGCGGACACAAGCGTCATCCGACCAAGGAA 1466 29 100.0 33 ............................. GGTAGGGCGCCCCGTGGTGATCGGTGTGGGGCG 1528 29 100.0 33 ............................. TTCATGCAACTCGAGCTCGGCCCCGGACGCATC 1590 29 100.0 32 ............................. GGCAAGGACATGGATTGGCGGGTGCCGATCGC 1651 29 100.0 32 ............................. TACGTCGTGCCGGCAGGCGGCGACGTCCGCAG 1712 29 96.6 32 ................G............ CGGGGTGTCTACCCCGAGCCGTACACCCTCGA 1773 29 100.0 32 ............................. TGGAACGTGACGAGCAGCGACAGGCCAGCCGA 1834 29 100.0 32 ............................. CCGTTCCGACTCCCCCGCAAAGCCGAGAAGTG 1895 29 100.0 32 ............................. GGGGCGCCGCTCCCCGAGTCGGCGTACCGGCT 1956 29 100.0 32 ............................. TCCTTGTGGGCCTGCTCCGGGGTGGTCGCGCA 2017 29 100.0 32 ............................. GACGCCGAGGTCCAGGCTCATGCCGTTGCCGT 2078 29 100.0 32 ............................. GGGACGTGGCCACGTCCATGTGGGAACATGCC 2139 29 100.0 32 ............................. GGTGTCCGAGACGGCGGCGGCCGGCGCACCGG 2200 29 100.0 32 ............................. TCGCCCACTGCGCATCGAACCCGAGGCGGGCC 2261 29 100.0 32 ............................. AGGATCGCCGCGAGCCCGGTCGCGATCGGCAC 2322 29 100.0 32 ............................. CGGAAGTAGCGGCGGCCGCGCCGGAACCCGGG 2383 29 100.0 32 ............................. GTGGCCACTGGGGACCTCCTTTCTGCTGGTCA 2444 29 100.0 33 ............................. GACTACACCGCTTCCTTCTCCGAGGAGTGCGTG 2506 29 100.0 32 ............................. CTTCTCCGGCAGAGCCCGGCCTTGGCCGAGGC 2567 29 100.0 29 ............................. GACGTCCGCTGTCGTGCTCGATCACGTAG 2625 28 89.7 0 .C...................-......G | ========== ====== ====== ====== ============================= ================================= ================== 41 29 99.5 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GCCTTCACCGCCTTCGTGACAAGCGTCAAGGCCGACACCCTCTCCACCTCCTGATCCCCACGGGGGAAGTCCTGCGGACTTCGCAACACAGGAACCGCTTCGCCCTATTCGTGACGACTTGCCGGGATCAATGAAAGTGAGTAAAAACCACCCTCCCCCGCCACAAACCCGCAGGTCATCTCTTC # Right flank : GACACACCTGAGGGGCGTCGTCGTCGGCGTGGTGGGTCAGAGCTGCTGGACGGCCGTCTCGTAGTCCCGCGCGTCGCTGGGCTTGAGGTGGCTGGAGACCCGCACGACGGTCGCGCCATTCCGGTAGACATACTCGGGGGTGACGAATCCGCCGAGGGCTTTCGACATGTCCTCGACGTACTTCACCCACGTCGTCGCGGCTGCCTCGGTGGCGAAGGTTTCGACGGTGCCGCCGTAGTCGATTGAATGGGTGTCGCCGTCGGCTGCTTCGTTGGCTGCGGCCGTGTCCACCCGCGAGTCGGCGAAAGCAGTCTTGCCGACGTACTGGTGTGGCCGGCCGAGCCGCTTGTTCGGGTCGGTGTCCTCGTCGTAGACGACGGTCAGCTTCATCGTCGGGATCTTCGCAGCGAGGGCCTTGGTAGCTTCCTCTGCAGTCGGCCCCGCGACGGACTCGGTGGGCGCCGCGGATGCGGGGGGCCTGTTGCTGCCGGAGGGGGCGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6367-7580 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLF01000256.1 Streptomyces durbertensis strain DSM 104538 NODE_256, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 6367 37 100.0 38 ..................................... TCCAGCGTCCACGTGCCATCAAGGCGCACCTCGACCAC 6442 37 100.0 38 ..................................... GACAACTGGCGGGGATGTACCAGGAACTCGCCCAGCAT 6517 37 100.0 36 ..................................... ATCAGAAGGGTGGCCCAGGAGTGGCGGTCTACAAGC 6590 37 100.0 36 ..................................... CTCTACGGGCTCGCCGGGTTCCGCCGGCACGGTGGG 6663 37 100.0 36 ..................................... CGGAGGACGACGCGCAAGGCGAGGGATCGCTGGAGT 6736 37 100.0 37 ..................................... GTCGTCGTCCATCGGCGAGCGGTAGTCCTGGCCGGAA 6810 37 100.0 36 ..................................... CTCTCCTCCCGGCTGCGGGAAGTCAACGGCGCCGAA 6883 37 100.0 37 ..................................... TCCGCCTCGGTGCGCTGGCCCGGAACCTCAGCCGCGG 6957 37 100.0 36 ..................................... CACCATGGCGCGGGGTGGGCTGTCGGTTAAGGCGGC 7030 37 100.0 37 ..................................... GTCCACCGGCTGGTGTGCCACCCGCTGCACCCCAGCT 7104 37 100.0 38 ..................................... TCCCTCTGGCACAAGAAGGCCAGCCTGCCGACCCCGCC 7179 37 100.0 35 ..................................... CCTTGCGCCACCGCTCGTAGGCGCCCTCCTGGTCC 7251 37 100.0 38 ..................................... ACCACCACGGGCGCGAAGCGCCCGAGCACCCCTGAGCC 7326 37 100.0 36 ..................................... CCTGCCAGTCCTCCACCAGCTCGTCCAGGCGGCGTG 7399 37 100.0 35 ..................................... CCCGAACCGATGGAAGACCTCGGCACTGGACACCG 7471 37 100.0 36 ..................................... TCATCGACACCCCGCAGATCGAGGACCACGCCGCCA 7544 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 17 37 100.0 37 GTGGCGGTCGCCCTCCGGGGCGGCCGGGTATCGCAAC # Left flank : ATGCAAGCCCGCCTCCTCGCTCGCCACCTCCGCGGCGACCTCCCCGCCTACCTCCCCTGGACCGCAAGCTGACATGGACCTCCTCCTCACCTACGACGTCGACACCACCACTCCCGAAGGAGCCAGACGCCTCCGCCGTGTCGCAAAGCTCTGCGAAGGCTACGGACTACGCGTCCAGAAGTCCGTGTTCGAAATCGTCGCCGACGAGAAGAACACCCTCCAACTCCTCGCCAGGATCGATGCCATCATCGACACCAACCTCGACAGCATCCGCCTCTACCGCCTTCCCCACAACGGCCTCGCCGACGTACAGACCCGCGGCACCGCCCGACCCCAACCACACAGAGACGACCTGGTCATCTGAGAGCCCACTTCGGTACCGCAAGCACACCAACGACACGCGGACCACACCGAGGCAAAATGCCGGAATCACCCGAACCGCCGCCGGCCACACCCGTCGTACAACGCACCACCGGCGGCGAATACACTGCTCAGGCACC # Right flank : GCCCTGAGGCTGTGGCCCAGTGGCTCGCGGTGGGGGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGGGTATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-18.40,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [30.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 5917-3935 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLF01000228.1 Streptomyces durbertensis strain DSM 104538 NODE_228, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 5916 28 100.0 33 ............................ CCATCCGGTCGCCGTCGAGTTCCCAAACGACGA 5855 28 100.0 33 ............................ GATGGCGGTGACTTCGCGGATGCCGTCGACTTG 5794 28 100.0 33 ............................ TATGGTCGACAGACCTCTCTCACCTGCATCCAT 5733 28 100.0 33 ............................ TGGCGCACCGCGCGGGAGGTCACCCGCGAGGAC 5672 28 100.0 33 ............................ GGGGTGGGGTGCCGTCCGCTCCGCGCGCCGCGA 5611 28 100.0 33 ............................ TCCATCCGATGCCGCACCCTCCTCACCGGAATC 5550 28 100.0 33 ............................ CCCGATCAGCGCCGGGCTGACCCCTCGCCCGTC 5489 28 100.0 33 ............................ GGGGTGGGAGACGGGCCTTTCCGGGCCCCTTGC 5428 28 100.0 33 ............................ GGGGGGAACCGGTCGCGTCTGCCTGCGGGGTGG 5367 28 100.0 33 ............................ TGGAGCATCCCGGAGCAGCAGAGCCTACCCAAG 5306 28 100.0 33 ............................ GCGCACGCCGCCGCGCAGACGGAGATGGCCGCC 5245 28 100.0 33 ............................ CTCTGACCCGGATCTGCTTCCGATCGAGTGGTC 5184 28 100.0 33 ............................ CTTCCCTGCTCAGGTGCCATGCGGCGGTCGCTG 5123 28 100.0 33 ............................ GGCGCGGGTCGACTTGGGCGACATCAGCACGAT 5062 28 100.0 33 ............................ GCCGGTCGGCACGCCGAGCGCGTGGCCCTCCTT 5001 28 100.0 33 ............................ GCCCGGCGCGGTGCTCGGTGGTGCGGAGGCGGC 4940 28 96.4 33 .................A.......... GGCAGGTCCGGTCATGCCGTACGCGAGTCTCGG 4879 28 100.0 33 ............................ GCGGATCCAGGCGACCGTCTGGGAGAGGCTGGC 4818 28 100.0 33 ............................ CTCGCTGACCTGCGTGGATGATTCGCACCCGCT 4757 28 100.0 33 ............................ GGACTGCTGGTGCTCCGCGATGTCCTGCCGGTG 4696 28 100.0 33 ............................ TGGCAGGTGGGCCGCTTTCCGTCTCCAGGCGGA 4635 28 100.0 33 ............................ GCCGGTCGGGACGCCGAGCGCGTGGCCGTTCTT 4574 28 100.0 33 ............................ CTCAACAGCAAAAACCCCCGGTGCGTCACTGCA 4513 28 100.0 32 ............................ GCTTCCGGGGCTTCTGTGGGCTGTCGGCGCGC 4452 28 100.0 33 ............................ GAGCCTTCGCTGGCGGAGGTGTTCGAGGCCGCC 4391 28 100.0 33 ............................ GGTCTATCGCGGGTGGCTCTCCGGGTACTTCCC 4330 28 100.0 33 ............................ GGGTGTCTGCGTAGTCGGCCGGCGGGCTGACGG 4269 28 100.0 34 ............................ CCCGAGTCTTAAGACGTCGGCACGGCCTTGAGTC 4207 28 100.0 34 ............................ GCTGCCGTCCAGCCCGGAGATGTCCACCCCCGGC 4145 28 100.0 33 ............................ GGCGAGTATGCGATGAATCCAGGGTCATTCGTG 4084 28 100.0 33 ............................ GGTTCGCGGGCCGCTGGAGGCCGCTCTGGCGGG 4023 28 100.0 33 ............................ GCGGTCCGCCAGGCCGGAGTCGCTGCGGATCTG 3962 28 85.7 0 .........A...AT........G.... | ========== ====== ====== ====== ============================ ================================== ================== 33 28 99.5 33 CTCGGCCCCGCACCCGCGGGGATCGTCC # Left flank : CTCCTCACCACACACGGCCCCAACACCGACGACACCGAAGCGAACCAACTCTGGGACGAACACCTCGGCACCGTCCCCGGCGGTACCAACTGGTCCACAACCATGCCCACACCACACGACCCCACCGACAACCACATCGCCATCATCGGCCCCGACTTCACACCACCAACCCCATGACCGTCATCGTGCTCATCGCCGCCCCCGAAGGCCTACGAGGCCACCTGACACGCTGGATGGTCGAAGTCCACGCCGGCGTGTTCGTAGGCAACCCCAACCGCCGCGTACGCGACCGCCTCTGGGAACTGCTCGCCACCCGCATCGGAGACGGACAAGCCGTACTCGTCGAACCCGCCACCAACGAACAAGGATGGGCCGTCCGAACCGCCGGCCGCGACCGCTGGCGCCCAGTCGACTACGACGGCCTCATCCTCTCCGCCCGCCCACAAACCCAACTAAACGAAAACACCCCCACCCCGCGCTAAAACCCCAGCTCAAAAAGT # Right flank : CGACCACGTCCCGAACCGCCCCCTGGTCCGTCTGCTCCCCGCGTGTGCGGGTCGTCCTCGCGTCCGACCCGCACACGCGGCAGCACTCCGGGCAGTCGGGGCTGCGCGCTTGCCTCTGCGTTTGGCTTTCCTGAGGCGAATCGGCGGTCACGGATTTGTGTGTACGCGGCGTTGGTACGCGTCTCGTAGGTCTCTGCGGACAGTTCTTGGACCACAATGAGCGTTCGAGGCCAGGAGGGTACCCGCTATGCCGACCGCGGGTCCGGGCAGCGTTCGCGGCCGCGCGGGCATGTCAGCAGCGTACGAACGACGATCCGGCCAGGTTCGTAGTAGCCGATGTAGGCGTCCTGGCCGAGTTGGAGCATGCGGTGTGCGTGTTCCAGGTGTAGCTCCACGGGGAGTCCGCCGGGCACCGGTGTGTGTCCGCCCAGCTCCTTGGCGAGCCACGCGTACGCCTCGTCGACGTGATGGTAGGTGCCGGCCAGCATGGTCTTCGGCTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCACCCGCGGGGATCGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 2014-2957 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLF01000305.1 Streptomyces durbertensis strain DSM 104538 NODE_305, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2014 29 96.6 32 ............................T ATCCGGTTCGGCCTGGCGACGACTCCGCCGCC 2075 29 100.0 32 ............................. GCGCTGCACCCTGCACTGCCCACGGTGCAAGC 2136 29 100.0 32 ............................. GCGTCCGGCTGGCGGAGGTGTCCACCGCCACC 2197 29 100.0 32 ............................. AAACCCGACGTGTACGCGGTCACCCGCGCTCG 2258 29 100.0 32 ............................. GGTGCGCGAAGGGCCATGATGCATCTGTGATG 2319 29 96.6 32 ................T............ GAGCAGTGGGCGCTCTGAGCATGGCGACGGCC 2380 29 100.0 32 ............................. TGACCCCAGTTCGCACTAACTCGCTCCTGCTG 2441 29 100.0 32 ............................. CGGTGGCGCCGCACCGCGAAGGGCTTCTACGC 2502 29 100.0 32 ............................. AGGGTCATTTTCAACGGCCGAGACATGGACTG 2563 29 100.0 32 ............................. GCCCAGTTCCCGACCTCCAGCGCCCCGTCCAC 2624 29 100.0 32 ............................. GGGCAGTCACGAAACATGCTGTCGCACGCCGC 2685 29 100.0 32 ............................. GCGGCCTGCGCCTCGTCGGTGACGGCCTCGGC 2746 29 96.6 32 ............................T GAGGCCAAGCAGCCTCGCTTCGTCGGGGGAGA 2807 29 100.0 32 ............................. GATTGCGAAGTTGGTCGTGTATCGGTGGGTCA 2868 29 96.6 32 ....................A........ TCGCCAGGCTGCGGCGCCTGGTCGTGCGGCGT 2929 29 82.8 0 ....................C..AC..AA | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.1 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CGCCCTGATGGCCCGCTCCGAGTCGGCGCAGCGAGGCTGCCTTGAGCGTGATCTCGCCTCGTGCCGCCATGTTCACGGCCTACCATCAGCTACAGGCTGAAGCAGCCTCCCAGGCGGCGTCCGTGGCAAGGATCTACGAGTTGCGAAAGGGCACACCGTGACGACCGAGTCCCCCCGCTGGTTCAAGTCCACCTACAGCGACAACGGTGGCGTCTGCGTCGAGGTCGCGGCAAACCTCGCCACCTCCCACGGCGTGGTCCCCGTCCGCGACTCCAAGCACCCGACTGGCCCGGCTCTGACCATCCCCACCCCCGCCTTCACCACCTTCGCGGCAAGCATCAGAACCGGCACCCTCCCCACTCCCTAATCACCCACGAGACCAGCACTACGCCGGACACCACCACACTGGCGCCGTTTCACCCCATTAAGCCGACTTGCCGGGATCAATGAAAGTAAGTAAAAACCGCCCTCCCCCGCCACAAACCCGCAGGTCATCTCCT # Right flank : ATCGGTCACCGGCTCACGTGAGTCGGTGGCCTTCCTTCGGGCCCTACCGCTTCAAGATCGCTCCAGGCATGCACCGCTTTGAGACTCCGCGGCGTCCGCGCGTTGCGAGGGGCGAGGGGACGGAACCGGGGCGGGTCAGTGCCAGACTGCTTCCATGCAGGACAACTTCTTCTCGCTCACCCGGGTGCGACTACGGCACTACAGGAGCATCGCGGCGGCCGACGTCGAGTTGGGGCGTCTCCTGCTGCTCGTAGGCCCGAACGGCTCAGGGAAGAGCAACTTCCTGGACGCGTTGAGGCTACTGTCCGAGTCGTTGCAGAACTCACTCGATCGAGCACTCCGCGCCCGTGGGGGAGTGACGGAGGTCCGCCGCAGGTCCGCAAGTCATCCAACCCACTTCGCCATTGACCTCGAGTATCGATCCCCTGATTACGAGGGCGAATACGGGTTCGAGGTCGTTGCGGTCGAAGATGGCGGTTTTCGCATTTCAAAGGAACGCT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 5764-6524 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLF01000305.1 Streptomyces durbertensis strain DSM 104538 NODE_305, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5764 29 100.0 32 ............................. CTCGGCACCCGGCACGGCGGCCGGAGCGGACT 5825 29 100.0 32 ............................. TGGCACTTCGCCGTCGTGGCGCAGGCCCGCGC 5886 29 100.0 32 ............................. TGGGACGCGACTGTCCTGACGGCTGTCACAGC 5947 29 100.0 32 ............................. GGGCCGCTCGTCTCGTCCACGCTGTCCGAACT 6008 29 100.0 32 ............................. GACGATGTTCCCGGCGGTGGTGCGGAGCAGTA 6069 29 100.0 32 ............................. GGGGCAGGGGTAGTAGTCGCAGGCATCGGCCA 6130 29 100.0 32 ............................. TGGTTCTTGACCTCCCGACGCGTGACCCGGAC 6191 29 96.6 32 ............................G GTGTGTACGTCAGCGAGGCAATGAAGGACCCG 6252 29 100.0 32 ............................. CTTGCCGACCGGGGCGGCGCCAGCACCCTCGA 6313 29 96.6 32 ............................G GTTGTCCGCGACCGCCCGGAGCCGCGCCGGTC 6374 29 100.0 32 ............................. CCGTACAGAGGGTCAGGTGCTATACGTCCCCG 6435 29 100.0 32 ............................. GAAACCCACGGGGGGTTGTTCTGCGAATTCGG 6496 29 86.2 0 ......................G..GG.T | ========== ====== ====== ====== ============================= ================================ ================== 13 29 98.4 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GGTGACGTTGCCGGCGCTGTCGACACACGTCTCCATCGACCACACGGTGGAGCGGTCCGGCACCCACGTCCGCGCCCCGGAAGGCCAGACGTACGGAAGGAAGCACCAGAGTGCGACCTCGGGAGCGGGATACCACTCGAGCTGCGCCAACTCCCTCATCTCAGGCAGCTCTTCACGCTCCAACTCCGTTTGATGTGTGCGCCCGGCAACCTGCGGATTCGGTGGCTCCTGCCGACCCCAGTCCATGGCACCCACGGTAGACCTCGACGCCCGGGGCGACCGCAAGCGCACGCGACTTCCTCCACTCGAACACAGGGCAAGACGGTCCGGAAAACGTCTCGCCCACCTACCATCAGTCCCAAGCTGGCACCCTCAGCCCCCTGACCACTCCGGCCAGGCCTGGCAGCCGTACACAACGCCCGAAATAGTCTGACTTGCGAGGTTCGGCGAAAGTGAGTAAAAACCGCCCTCCGCCGCCACAAACCCGCAGGTCATCTCCT # Right flank : GTCTGGAACCGGGAGGGCGGTGCGCTGCATGTATG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 142-1328 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLF01000313.1 Streptomyces durbertensis strain DSM 104538 NODE_313, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 142 29 100.0 32 ............................. ACCGAGAAACACACCCCCCTCCGACAAGTCCG 203 29 100.0 32 ............................. GCGGACGAGGGCGCCTGGTCTGTCTCCGCCTG 264 29 100.0 32 ............................. GTCTGGGAGGCGGTCTGCCGGGTCGCGGTTGA 325 29 100.0 32 ............................. CTGTCGACCGACACGTCGGCGAGCACGACCAG 386 29 100.0 32 ............................. GACGGACCGTCCCTCGCGGGCCGGTTGGCGCT 447 29 100.0 32 ............................. CGCGCTTGACCTGCGGGTTTCCGGGTTTCCCC 508 29 100.0 32 ............................. GACGTCCACCGCGCTGGCTTGGGCGGGATGAT 569 29 100.0 32 ............................. TCCGCAGGTCAGGGGCGGTTGAGGGGGTCAAC 630 29 100.0 32 ............................. TACGACGGCGCGGAGCACCTCCCGATCCTGCG 691 29 100.0 33 ............................. ACCACCTGCCGCAACCAGGTCGTCGAGCCCGAA 753 29 96.6 32 ............................T CAGGGCGCCCGTCGTCTGCGCGAGGCGATCCG 814 29 100.0 32 ............................. ATGTCGTCGTTGAAGTACACGAACTCGCCGGA 875 29 100.0 32 ............................. ACTCCCGCGCCTGGCAGGCCGCGGCGGCGGAG 936 29 96.6 32 ............................T GGACGGCGTGCAGGCGACGTCTGTGCTGACGG 997 29 100.0 32 ............................. CAGGCCCCGAGGGAGCCACAGCCTGCCTGCGA 1058 29 100.0 32 ............................. CCGTCGCGGTGGCCCAGGATCTCCGGGCCGGC 1119 29 96.6 32 ............................A GCCTGAACGCGGCTGCTGCCGCAGCCCTGGCA 1180 29 100.0 32 ............................. CCGCACCCCAGACAACGGAGACACCACCGCCA 1241 29 93.1 32 ......................C.....G TAGAAGGTGAGTGCATCCTTACCCCGTGGACT 1302 27 89.7 0 .....G...............-...-... | ========== ====== ====== ====== ============================= ================================= ================== 20 29 98.6 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : GCCCAACGCCGCCGCCACGGCCGCCGCTGACCGGCCCACCACCCCATGGACAACCAGATGACCGTTCTATCCCTTCTGTCGGACTCCGTGAAAGTGAGTAAAAACCGCCTCCCCGCCACATAAAACCCCAGCTCACGCCTTC # Right flank : CGGGGGCAGTTCCGCGCCGACTGGCGAAGCGCTCGGGGCTACAGGGCCCAGTGGTGCAGGCTTCCGGTTGGGTCCGTGTACGTGACGGTCTGCATGTCCGGGGTGGCGGTGATCGTGAACCATTCGCGGCGGGGGCGGTTCAGACTCAGCCAGTGGTCGTGCGCTTTCTCGATGGGAGCCCAGAGGTCCCGAGGGCCGGAGGCCTGGACTCGCGCGGTGGGTGCTTCGGGTTGGTCGGTCACGCGGGTGCAGGAGCCCTCCCGGGGGTCGAACAGGGTCGTGACGTGTGAGCCGTCCGCCTCGCGGTGGTACTCGCGGAGGGTGGTCGGGGTGAGGTGCAGCTCGGCGAAGAACGAGAACGTCCAGTCGTCCAGGACGCTTCCCGAGAGTTCGGAGGGGCGACTCGTGCCGCCGGTCGGCTCCGGAACGGGGCGGCGCTGTTGCTGGCCGGAGTGCAGTGGCATGAAGGCTGCGGGGGTGTGGAGGATGTGTCCGGCTGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5641-3404 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLF01000352.1 Streptomyces durbertensis strain DSM 104538 NODE_352, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5640 37 100.0 36 ..................................... AGGTAGACGGCCGTGGCGATCATCGCGAGCACCGCC 5567 37 100.0 35 ..................................... CCTGTCGGGCTGGCCGTCTCGACGATCGTGACGCT 5495 37 100.0 37 ..................................... CACTCCTGCTACGACCGGGGCACGCTCGAGACGGACG 5421 37 100.0 36 ..................................... GCCTGCCGCAGGTCCGCCGCCAGGCCCTGCATCGTG 5348 37 100.0 37 ..................................... CTCAGTCTCGGTACGCCCGCCCACTCGGCGCACCCCG 5274 37 100.0 35 ..................................... CATGAGCGGGCCGAGATCACGCAGCTGCTCGGCGA 5202 37 100.0 35 ..................................... GAGAACAAGCCCCGCCCATCGGATGGGACGTGGTG 5130 37 100.0 41 ..................................... TCCAACTGCTTGGCGGCGGAGTCGGAGAACGCGATCGTGGC 5052 37 100.0 36 ..................................... CTGTTCAGGTGGCGGCGGATGGTGTGGCCCGCGCTC 4979 37 100.0 38 ..................................... CATGACCGGATAGCGCGGTCTGAGATCCCCTGATCACG 4904 37 100.0 38 ..................................... GGGCACTCGGTGCTGGTACTCCTTCGCGCCGAACTGGC 4829 37 100.0 36 ..................................... GGTCTGGCCGGGGATAGGTGCGGGGCCGTGCTGCTC 4756 37 100.0 37 ..................................... TCCGGCTCGACGGGTGGCATGGCCGATGTCCTCGCGG 4682 37 100.0 37 ..................................... ACCAACATCGGCACCTACTCCGCCGCCGCCGTGGCGG 4608 37 100.0 36 ..................................... TCGCGGGGGAGCGAGACGACCGTCGCCCACTCGCGG 4535 37 100.0 36 ..................................... ACCTTGTCGTGCCGGAATGACGGGCGGGGGAGCGGT 4462 37 100.0 35 ..................................... GCCTCGGCGATCTCCTGCAACTCGCCCGCGTCGGC 4390 37 100.0 36 ..................................... CTGCTGCTGGTGGCGCAGCACTACGGGGCGCACAAG 4317 37 100.0 36 ..................................... CCAGCACTCCTGAAAGAGGCCCGACAGTCGCGTCGG 4244 37 100.0 38 ..................................... GTATTTCGGCGGCACCAGTGTCGGCACGCCGTCCACGT 4169 37 100.0 36 ..................................... CGCGTCTGCCGACTTGGACGAGGCCGAGGTCGTCGA 4096 37 100.0 36 ..................................... GACCCGGTCGACAGGTATCCGTGCCCCGCGTCGAAC 4023 37 100.0 36 ..................................... CTTGTCGATCCGAGCGTCTGGCAGCGCCTCCGGTGA 3950 37 100.0 38 ..................................... GTCGTGGCGGTGTGCGGCTGGAGACGGTACGCGTGTGG 3875 37 100.0 36 ..................................... GACTCCATGACGGCTGGCGGTGGCGCGGCGGCGCTG 3802 37 100.0 36 ..................................... ACTCTCCCTACGCGGCGCGCGGACGCCTATCCCCCG 3729 37 100.0 38 ..................................... CACTCGGCGGCTCAGCCGATGGACCACCTCCAGGGCGG 3654 37 100.0 36 ..................................... CCACGGGCCGCCGGTGCTGCCAGGGCCGGCGGCGCT 3581 37 100.0 37 ..................................... ACCAACCGCCGCGCCCTCGTGGGCGGCACGGCCGACA 3507 37 100.0 30 ..................................... TGAAGCGCTTGCACAGAAGGGACCGATCCT 3440 37 97.3 0 ..............T...................... | ========== ====== ====== ====== ===================================== ========================================= ================== 31 37 99.9 36 GTGGCGGTCGCCCTCCGGGGCGGCCGGGTATCGCAAC # Left flank : CCCTGAGGCTGTGGCCCAGTGGCTCGCGGTGGGGGG # Right flank : GTTCCCGCGTCAGCTTGAAGATCGGTGAGGCGGCAGGTGACGGTCGCCCTCCGGCGGGTATCGCAACGCCGTCAGCGCCCTATGGTCTCTCGGCCCCGCGCCTGCGGGGATCGTCCGATGCGAGGCTCCGTTCCGCACGCCGGCCACCCCTCGGCCCCGCGCGCGGGAGTGGTCCCGGAGTGCGCGATCGCGCCAGGTCGTGCGACGCGTTCTCCCTGCCCGAGCGGCCGCCCCATCCTGCGTGGCCCTCCCTCTGGTCTTGGTCTTCCTCCCCGGCACCGTAGAAGAGTTGAGCCGGTGCGATAACCGCCGCAGGGTTCCGGCTGCATCAACGGGCATGAGCGTGAAACAGCCGAAAGGCCATCTGTCGGCGTACTCGAGAATGTGCTCAGTGAAGTACGGACAAACGTGCTCAGAGAGATGAGGGGCTGTTCGCTCGGCTCGAGCGGAGTCGTGGCACGATGACCTTGTGGAGAGCCCTGGTCTTTCAGCGCGTCGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGCGGTCGCCCTCCGGGGCGGCCGGGTATCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGCGGTCGCCCTCCGGGGTGGCCGAGGATCGCAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-18.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1422-1714 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLF01000416.1 Streptomyces durbertensis strain DSM 104538 NODE_416, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1422 32 96.9 35 .......................A........ CTCGCGCAAGAGCTTGGCCGCCTCCTCGAACCAGG 1489 32 100.0 31 ................................ GATCGCTCGAACAAGCACGTCGCGTGTATGA 1552 32 96.9 32 ..............................G. TGGACGAGCCGGAGTTGAGTCGGGCCTCTTCC 1616 32 100.0 33 ................................ CAGGCGCGCGTCCTTCGCCGCGGAGGCGGGCGG 1681 32 100.0 0 ................................ | G,G [1710,1712] ========== ====== ====== ====== ================================ =================================== ================== 5 32 98.8 33 GTTGCGAGCCCTCCAGGGCTGATGACGGCCAG # Left flank : CGGCGGTCCGGGCAATAGCCGGGCTTGCGCCCGCAGGGGTCAGCGCAGCCGTGCTCGTACCTCGGCCGCAGGCGGTTCTTCCGAGTGCGGATGTATCCCGCGTCGAGGTAGACGTCCTCCCACTTCAGCCCGAGGACTTCGCCCTGCCGCAGCCCGAGCGCCAAGGCGATGACCCAGCGCGCGCTGTTGCGGAGCTTCGCCGCTTCTACGAGGAGACTCTGGACCTCCTCGATGGTGTACGGCTCAATGTCCTCCTCTTCGATCCGCGGCGCCCGCGCGATCTCGGCGACGTTCTTGGTGATGTGGCCACGGCGAACGGCTTCGGCAAGAGCCACCCGGACCGTGCGGTGTACGTGGTGGGCCGTCCCGGCGGCGCTCCCGTTCCGCTGCATGCGTTCGTAGAACGATTCGAGGTGCTCGGGTTCCAAGGCATCCAGCTTGTGAGCGCCCAGGCCGGGCGGCGCGGTGCTCGCGCAGCTCGGCGCGCAGCAGGCGACCAT # Right flank : GGGTAATGCTGCTGGTCAGCACCTCCCTCGAGGCGGCTTCTGGAACAAGATGTGCAGCAGTCCGACGGTAGTGCAACAGCTCAGGTCAGAGCTGTGCCGCTGCGACTGGCGTCCTGTGGTTCGCCCAGGTATGTCTCAGCCAAATTGCTCCCTCGGGAGCCATGCTTCCCACAGAACGCGGGACGTCCACGAACCGTATGCCCGGCGCCAGAAGGCGCCGAAGGCCGGCGGCAGCTGCTAGCACGAGGACGTGAAGGCAACGGCCTGATCGAGGTGGAACGAGGAGCCCGGGGCCGTCGGGGTCCAACCCTCACGCAAGGCAACCCGAACAGCCGCGGCGACACCGGACGGCAGTACAGGCTCAGCTTCGCGGCCGATCCAGTTACTCGGATGCGGCTGGTCGGTGATGACCACGAGCGTCGTCCCTGGGGTGTTCGCATGCTCCACCGCGAACGTACACGGCGACCATGCCAGCCCCTGGCAGTACGTCGGCCGGCCCC # Questionable array : NO Score: 3.00 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAGCCCTCCAGGGCTGATGACGGCCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 1283-1434 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLF01000732.1 Streptomyces durbertensis strain DSM 104538 NODE_732, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1283 29 100.0 32 ............................. GCCGGCCGCATCCGGATACCGCGCGTCGCCTT 1344 29 100.0 32 ............................. CGCGAGCGTGACCGGGAGGTAGGGGGCCGGGA 1405 29 93.1 0 ......................CA..... | G [1427] ========== ====== ====== ====== ============================= ================================ ================== 3 29 97.7 32 CTGCTCCCCGCGCACGCGGGGATGGTCCC # Left flank : CACGGCCAGCCGCCGCGCGTCGGCAAGCCCCTCCGGCAACGGCCCGGCCACCAACTCCCGCACGTTGTCCGGCAACCACTCGTCCCACAACAGCCCCGCCACGGCCGCACTGTCCGCCATGTGCCGCCACAGCGGCATCCAGCCGCCGCTGTCGCGATCGTGCTTAGCCCACGCCGTCCGCACCGGACCGGCCAACCGGCCACCGAGCCCGGACGGTGAGCCCCCCTCACCTGTCATGTCAGATGAATACAGCCCACTCCGGACACCTCGCAGTCACAGCCGAACAAGTCATCCACGTGAGTGAATTCCGCCCGGAGCCCCAGCACTCCAACCGAGGAACCTGTAGCGTGATGCGGTTGCAACGCGCGCAGCCCTCTACGGCCCGCCCGTCACTAGCGCGCCCGACCTAACCATTGCGTGACCTTTGACCGGATTTGCCGGAATCTGTGAAACTCATGGAAAACCCACACCCCCCGCCACAAACCCGCAGGTCATCGACT # Right flank : CCGCAGCGTGGCCACCCGCAGGACACGCGGGGAGGTCGGTGTGCGGCGGGGCGCGGCCGGTCAGGGGCGGCGGCC # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 445-610 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLF01000099.1 Streptomyces durbertensis strain DSM 104538 NODE_99, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 445 32 100.0 36 ................................ CGGTGCTGCGGCGGTAACTGCGGCGCACGATCCTGT 513 32 96.9 34 .............................C.. CCAGCGGTCCGGCCGAGGCGGCGCGGCTGCTGTT 579 32 96.9 0 .......A........................ | ========== ====== ====== ====== ================================ ==================================== ================== 3 32 97.9 36 GTTGCGAGCCCTCCAGGGCTGATGACGGCGCG # Left flank : ACCCCCTCGGACTGTTTCCGGGGCTGCTGCTGGGCATCGACCCCGACGCCGACTACCCCACCGCCGAGATCTCCCTCCCACCCGGCGCCGTCCTCGCCCTCTACACCGACGGCCTCGTCGAACACCCCGGCACCGACATCGACGACGCCATCGCCGACCTCGCCGACCAGCTCGCCGCGGCAGACCCCGGAGACCTGGACGCCCTCGCCGACAACCTCATCCACCACGCCGAGCACACAGCGCCACGTCACGACGACATCGCCCTGCTCCTCATGCGCCCCCAGAACCACCCGTGACCACCGGCCCGAGCGGCCGACACCGACGAGGGCGCAGCACGAGCCGTTCCGTCGCCCGCAGGGACGGAACGGGAGAGGGCTCGCCCGCCCTCCTCGACACCGGCCTCGTCCCCTAACACGTGCGGCAGGAGTCTCCGGTTGGCAGCGGG # Right flank : GAGGGTAAGGCCGCTCTTTCAGCGCCTCCCTCGACACGGGTTCTGGGGCAGGAAGTGCAGCAATCCGTCGGTAGTGCAACGGTGCAGGTCAGAGCCCTGTCGCTTCGGCCTGCTTTCTACGGTTCGCCTCAGGTGTGTCCCCCAGCCAAACTACCCCCTCGGAGCCGTGCTTCCCACAGCGCTCGGAACACTCGCCGGCCGCACCCGACGCGTGCCCGTAAGGCCGGTCACTCACGCCATCAGGGGCATTCGGCGACCGGCCGGGGCGACTATGAGGTCGTGACGTTCAGCAGATCAGCGCTTCGATCCCGGCTCTGGCGCCAGTGACTTCCAACCCCTGTGGGTCCTGCTCAGGCCCACAAGGTAGGAGAGCCCGTCAGAGCGCGATGCTCTTCGTGCGGTCCGGTTACGAATGCTCTGATGCGCGGGCCGGACCTCACTCAGCGCGGCATGACCCCGCACTTGACGTTGCTCTTGTTGATCCACGCCCACTTGATGCT # Questionable array : NO Score: 2.57 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGAGCCCTCCAGGGCTGATGACGGCGCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.20,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 532-4477 **** Predicted by CRISPRDetect 2.4 *** >NZ_WMLF01000144.1 Streptomyces durbertensis strain DSM 104538 NODE_144, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================================= ================== 532 28 100.0 33 ............................ ACGGTCAGTGGTGGGCATGATCGGCGGGTCTCC 593 28 100.0 33 ............................ CTGGTACAGCAGGTACCCGCAGTCTGCCAGGCC 654 28 100.0 33 ............................ CCTCGTTTGTCGTGAGGTGTGGCGGATCGGCGC 715 28 100.0 33 ............................ TCCCAGGCGTCCCGTGCCGTGCGGAAGCACGGC 776 28 100.0 33 ............................ GCAGCACGTCGCCGGACCGCCCTGCCTGCCCGG 837 28 100.0 33 ............................ CTCGAGCTGGTCGCGGACCACGTCCTCCCACTG 898 28 100.0 33 ............................ GTGACTGAGGCTCATGACACCCCCTTCCCGTCG 959 28 100.0 33 ............................ GGGCCGTGCCATAGCCCGCCAGCGACGGCCCCA 1020 28 100.0 33 ............................ GGGACACCCGCATGAGCACGCAGCCCGTACACC 1081 28 100.0 33 ............................ GGGCTTGGCGGCGTGGCGCAGGTAGGAGTGGGC 1142 28 100.0 33 ............................ CTGGACCAGCTCATCGCCGACATCGGGCTGCGC 1203 28 100.0 33 ............................ CTCCTCGACCGTAGGCCGCTCATGATGGAGTGT 1264 28 100.0 34 ............................ CAGCCGTGTTTGGTACGTGGCCGGTCGGGCCCTG 1326 28 100.0 33 ............................ GGCCGTCCGCCGCCGGATCGTCGAGGCCGGGAT 1387 28 100.0 33 ............................ GGTGGTTGTTGTGTCCGATATTCCCGACCCTGA 1448 28 100.0 33 ............................ GACGGTGCCGTCCCGCCGCACCACGGTGACCCG 1509 28 100.0 33 ............................ CTGCGGGGACACCGCGAGCCACCGGTCGTCCAT 1570 28 100.0 33 ............................ CGGCAGCAGCGTGCCGTCCCGGTCGTCGGTGGT 1631 28 100.0 33 ............................ GTTGCAGCACCAGGCCCGGCAGACAGCCTGAAG 1692 28 100.0 33 ............................ TGGGAGGGTGACTCTGGGGCCGGATTACGGTCC 1753 28 100.0 33 ............................ GCCACGGCCGGACGGTGTCCGGGGCCACGACGG 1814 28 100.0 33 ............................ TCAAGGCCCGTTTCCGCGCGTCCGCGCACATGC 1875 28 96.4 33 ..............T............. GCCGCACGGCTGATCGCCGCCGCCTACTCCCCT 1936 28 100.0 33 ............................ GCGAGCGCGGCCACGGCCGCGCAGACGACAGCG 1997 28 100.0 33 ............................ GTTCTCGGCACGTCGCCGCGGACGCCTGCGCCA 2058 28 100.0 33 ............................ GGTCTCCACGATCTCCAAGTCCTCCCAGGGCAG 2119 28 100.0 33 ............................ TCCATGTGGTACTCGGGCCGAAGGCCGGTCGTT 2180 28 100.0 33 ............................ GTGAGCGAAGCGGGTGAGGGTGCTGGTCCACCG 2241 28 96.4 33 ........................A... GGCGGCTCAGCTGCTGGAGACCGCCCGCTGTGA 2302 28 100.0 33 ............................ ACCCGGACCGCCGACCGCTCGTCGCCGACTTAC 2363 28 100.0 33 ............................ GTGGCGGGATGTCGTCGCGGTGTGTGCCGGGGC 2424 28 96.4 33 .................A.......... GCCCATCATTGGGCCTTTCTCGGGCTTCGCACT 2485 28 100.0 33 ............................ GTGCACTGGCTCGGCACCGCCTACAGCTCGCGG 2546 28 100.0 33 ............................ CGGGCTGCACTACGCGGTGCTCGCCCTGCACCG 2607 28 100.0 33 ............................ CCCGGAGCAGGGGCGTCTGAGGGCCAAGAAGGT 2668 28 100.0 33 ............................ GCACTTTTCCACGCGGGTGGCGGTGACCTTGAC 2729 28 100.0 33 ............................ TGACCGTGGCGACCTGGTCGAGCGCTGCCAGGC 2790 28 100.0 33 ............................ GTATTGCGGGTGTAGACGCCAAGGCAGTTGGTT 2851 28 100.0 33 ............................ CCTCTCCCTCGGCGACATCGCCGCACTGCGCGC 2912 28 100.0 33 ............................ GGCCGAGGACGAGATGACCGCTTTCCCCAAGGG 2973 28 100.0 33 ............................ CTGGCGGGCGTCGGTGGGCTCGGGGTGCTGGAG 3034 28 100.0 33 ............................ CAGCCGGTGAGCAACAGGACCGCACGGTAGTCC 3095 28 100.0 33 ............................ CACCATCAACGCGCACTACACCGACGCCGACGT 3156 27 89.3 20 ...........T..........-..G.. GCGGGAGCGGGGCGCAGGGG Deletion [3203] 3203 28 96.4 33 ........................A... GTAGTCCTTGGTCGGCATCGCGGTGTCCAGGTT 3264 28 89.3 33 ..T....................AA... CTTCGACACCGCCGACGAAACCCAGTACGTCAA 3325 28 92.9 33 ..................CA........ GTCCTGCTCATCGATGCGATCTCCTCGACCGTT 3386 28 100.0 33 ............................ CACGTACCGCTGGCCGTGGCAGGGGCAGGGCTC 3447 28 100.0 33 ............................ TGTGTAGGGGATGTAGCCGTCCGCCCGGTGGGC 3508 28 96.4 33 ........T................... TCTGTTCAGCGCGGGAAACGGCTCACGCGCCTG 3569 28 100.0 33 ............................ GCGGCCCCCGGGTGGAGCCGAGGGCCGCTCTGT 3630 28 100.0 33 ............................ CCGGCACTTCTACGGGATCGAGTGCGAGAATCT CT [3645] 3693 28 96.4 33 ..........A................. GTTCCTGTGTCCGTACCGGGCCCCCAATCGTGA 3754 28 96.4 34 ........A................... CTTCACAGTTCGTCCGCTTGACCTCCGCGAGGGG 3816 28 92.9 32 ..............T.G........... GTTCAAGTCCACCCCAACACGCTCCGCGAACT 3876 28 96.4 33 .............A.............. CATCCCGATCGGTGAGGTGGCGGCGGACCCGGT 3937 28 92.9 33 ............G........C...... GCTTCACCGACCCTCGGGGCCCGATTGCACTTG 3998 27 96.4 33 ............-............... GGACGTCGACGGCCGCGAACGCCCGATGTGGGC 4058 28 92.9 34 ............A...G........... AGACATGGCAGACCGTCATGGGCCACGACCGCGG 4120 28 96.4 33 .................A.......... GACCTCTCGGCGCGCCACTCCGTACCCACCGGA 4181 28 100.0 33 ............................ GGACATCGCCCTGGTGTCCACGGGGGTCGGTGT 4242 28 100.0 33 ............................ CATCAGCGGGTCTCCTCGGCGGTCTGCTGCTGG 4303 28 89.3 33 ...A.........AT............. GCTCGCGGTGGTGGGGGCCCGGGACGGGCATCC T [4309] 4365 28 85.7 57 ...........G..T.T......A.... TGGCGGCTACGACATCCAGGTGGCCACCGGCCGCTCGGCCCGACACCCGCACCCGCA 4450 28 78.6 0 .C..CA..........A...A..G.... | ========== ====== ====== ====== ============================ ========================================================= ================== 65 28 98.0 33 CTCGGCCCCGCACCCGCGGGGATCGTCC # Left flank : CTTTCCCCCAGACTCGGACATCTCCACCCCACCCGATCCCACTCCGTCCGCCTCAACCCCACTCAGCCGGACCCGGTGAGGCAATTGCCACCCCAACCGAGAGAAGCAACCTGAGGCCGACGGGAGCGACGCTGCAGCCAGCGGCGGCCTTCCGGTTCCCGCACCTCACGAGCGAGCACACCGGCGCGCCAAACGCTCCAACGCAGATCCGCCCTCAACTACAGAGGGTCACCCCAGGCTCGAACGGCGATCTCTCGGCTTCGCTAGTCTCTCACCGAAAGGCCGTCATGCCTGGCCAGCCGGCGGAAGAAGCGGGAGGTTGAGCGATGGCTTCGAGGCGGACCGATGCGCCCGCGACGTTCGTGGTTTCCCTTCTCCGCACCCGGAAGGGCCCAAGCCTCGCCAGTTGTGCACCGCATGAACAGGAGTGCTCGTCCCGCCGCCAAACACAACCGAACGAAAACGCCACGCACCACGGATAAAGTGCCAGGTCAGCAAGC # Right flank : CGGTTCTTGCCGCTGGCGCGCCGCTTAAGTGCAGTGTTGCTGGTCAGCGGTGGTTTCGGGCTCGTTGTCAGTGTGGGCGCTTAGCCTTCTGGCGAATCTGAACGGCGTTGGCCTGGAGGGCAGATGGGGATTCCGCGTGAGTTGCGGGTGATCTGGGGCAAGTCGAAGGAGCGTGCCGGCGGGAGGCTGAACCTTCTCCTCGCGCACATGCTTGATACGAGCGCGGTGGCGGAGCTGCTCTGGGATCGCTTCCTCTCTCCGGCGACGCGTGACACGTTGGACCGGTTGGCGGGTGGTGCCGGTCGGGGTCGTCGGTTGTTCAGCTGGCTGTGCGGTGTGCATGACGTAGGAAAGGCGACGCCCGCTCATCAGCGCTTGTGGCCCGAAGGGGCTGCGCTGGTGCAGGCGGCGGGGCTGACATGGCGGGAGTCTTTGGTTGGTGCCGCTGCGAAGCGGTCCCGCTGGCGGCATGACAAGGCCGGTGGGTTGATTCTCAAGGA # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCGGCCCCGCACCCGCGGGGATCGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGGCCCCGCACCTGCGGGGATGGTCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-37] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //