Array 1 1184-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUT010000024.1 Streptococcus thermophilus strain Nect13 Contig_24, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1183 36 100.0 30 .................................... TCCAGTTCTAACGACACTAAAACTAAGCGA 1117 36 100.0 30 .................................... CAAATAATATTAATAACCCTAACCGTACCA 1051 36 100.0 30 .................................... TTAGCCTTAAGCGGCATTAAGAAGCTTGGT 985 36 100.0 30 .................................... TATTGTAGACACTGGGAACGGTGGTTATTA 919 36 100.0 30 .................................... AGACCCACAAATGGCACTTAAAGATGCAAT 853 36 100.0 30 .................................... TGCTCGACTTGTTAAAAAAACTACTGAAGA 787 36 100.0 30 .................................... AAATTCTAAACGCTAAAGAGGAAGAGGACA 721 36 100.0 30 .................................... TACTGCTGTATTAGCTTGGTTGTTGGTTTG 655 36 100.0 30 .................................... TTCCTCTTGTAAACATTTTATTAATAATGT 589 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 523 36 100.0 30 .................................... TATGAATTGTCAAATTAACGGTTGCGCTAA 457 36 100.0 30 .................................... CGATGGAAATGATGGCTTGCCAGGTAAGGA 391 36 100.0 30 .................................... AATGGGAAAGTAGCTATATATGATCCAGAG 325 36 100.0 30 .................................... GAAGGCACAAGAAAGTCAAATGCGTAGCGC 259 36 100.0 30 .................................... AATTTTAACAGATATAGTGTAATCGGTATT 193 36 100.0 30 .................................... CTATTACTATACTTCCGAAGAGATTGCAGA 127 36 100.0 30 .................................... TATCCCAGAGAATGGAAGAACAATTATAGA 61 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : CTATGAATTGTCAAATTAACGGTTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 12275-15081 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUT010000010.1 Streptococcus thermophilus strain Nect13 Contig_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 12275 36 100.0 30 .................................... AAAGGACGTATTAAAGAAAAATACGGAACT 12341 36 100.0 30 .................................... ATTACTCTAAAACTAGAGCTCATAAATTGC 12407 36 100.0 30 .................................... GAGATGACCAAAAGAAATTTATGGATGCCA 12473 36 100.0 30 .................................... GCAAGTATGCAATGGCTAAACAATCTTTTG 12539 36 100.0 30 .................................... CATATATGATAGTTTGTCAACGATTATGAT 12605 36 100.0 30 .................................... TGCCCAATCATTGACTACTACTACACTTCT 12671 36 100.0 30 .................................... AACACAGATGTTTTAGACCATGCGCAGAAG 12737 36 100.0 30 .................................... TGTGATATTTGCAAAGATATTGGTAAAGAG 12803 36 100.0 30 .................................... CCTTAACATAAGATGAAAATTACCAAAGCA 12869 36 100.0 30 .................................... GATTCGTGGCGATATTCGTCTTACGTTTGA 12935 36 100.0 30 .................................... TGTTTGACAGCAAATCAAGATTCGAATTGT 13001 36 100.0 30 .................................... AATGACGAGGAGCTATTGGCACAACTTACA 13067 36 100.0 30 .................................... CGATTTGACAATCTGCTGACCACTGTTATC 13133 36 100.0 30 .................................... ACACTTGGCAGGCTTATTACTCAACAGCGA 13199 36 100.0 30 .................................... CTGTTCCTTGTTCTTTTGTTGTATCTTTTC 13265 36 100.0 30 .................................... TTCATTCTTCCGTTTTTGTTTGCGAATCCT 13331 36 100.0 30 .................................... GCTGGCGAGGAAACGAACAAGGCCTCAACA 13397 36 100.0 30 .................................... CATAGAGTGGAAAACTAGAAACAGATTCAA 13463 36 100.0 30 .................................... ATAATGCCGTTGAATTACACGGCAAGGTCA 13529 36 100.0 30 .................................... GAGCGAGCTCGAAATAATCTTAATTACAAG 13595 36 100.0 30 .................................... GTTCGCTAGCGTCATGTGGTAACGTATTTA 13661 36 100.0 30 .................................... GGCGTCCCAATCCTGATTAATACTTACTCG 13727 36 100.0 30 .................................... AACACAGCAAGACAAGAGGATGATGCTATG 13793 36 100.0 29 .................................... CGACACAAGAACGTATGCAAGAGTTCAAG 13858 36 100.0 30 .................................... ACAATTCTTCATCCGGTAACTGCTCAAGTG 13924 36 100.0 30 .................................... AATTAAGGGCATAGAAAGGGAGACAACATG 13990 36 100.0 30 .................................... CGATATTTAAAATCATTTTCATAACTTCAT 14056 36 100.0 30 .................................... GCAGTATCAGCAAGCAAGCTGTTAGTTACT 14122 36 100.0 30 .................................... ATAAACTATGAAATTTTATAATTTTTAAGA 14188 36 100.0 30 .................................... AATAATTTATGGTATAGCTTAATATCATTG 14254 36 100.0 30 .................................... TGCATCGAGCACGTTCGAGTTTACCGTTTC 14320 36 100.0 30 .................................... TCTATATCGAGGTCAACTAACAATTATGCT 14386 36 100.0 30 .................................... AATCGTTCAAATTCTGTTTTAGGTACATTT 14452 36 100.0 30 .................................... AATCAATACGACAAGAGTTAAAATGGTCTT 14518 36 100.0 30 .................................... GCTTAGCTGTCCAATCCACGAACGTGGATG 14584 36 100.0 30 .................................... CAACCAACGGTAACAGCTACTTTTTACAGT 14650 36 100.0 30 .................................... ATAACTGAAGGATAGGAGCTTGTAAAGTCT 14716 36 100.0 30 .................................... TAATGCTACATCTCAAAGGATGATCCCAGA 14782 36 100.0 30 .................................... AAGTAGTTGATGACCTCTACAATGGTTTAT 14848 36 100.0 30 .................................... ACCTAGAAGCATTTGAGCGTATATTGATTG 14914 36 100.0 30 .................................... AATTTTGCCCCTTCTTTGCCCCTTGACTAG 14980 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 15046 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ============================== ================== 43 36 99.9 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : TTGATGGATTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGTTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGCTGTTTCATTTTAGTTACCGTATAAGATATTCTCAGACACCTGATAAGGAACTATTACATAAATTTTTAGAAAGTAAGGATTGACAAGGACAGTTATTGATTTTATAATCACTATGTGGGTATAAAAACGTCAAAATTTCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 27358-27610 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUT010000018.1 Streptococcus thermophilus strain Nect13 Contig_18, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================== ================== 27358 30 100.0 42 .............................. GGAAACGCTTTCTAGCTCGCTATAATTACCCATTCCTAGAAA 27430 30 100.0 46 .............................. GGAAACTCAAAATATGTTATTACCTTGTATTTCATAATTCAATTAA 27506 30 96.7 45 ........................A..... GGAAACCCACTTGCTGTGTACATCCTACCAGTTCCGCCTATGATG 27581 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================== ================== 4 30 99.2 45 GATATAAACCTAATTACCTCGAGAGGGGAC # Left flank : AGAGTTTGATTAGGGCTTTTAGAGAACTTGACCCTAGTCTCTATGAGACAAGTTACACAGGAGGGCATTAATGGGACTTTACTTTAACCTCAGCGAAGAAGAGCGTGAGTTTGCCAAACAAAAAACCATGTTTTGTCTGATTATTTATGATATCCGAAGTAACAAACGTAGACTTAAACTCTCGAAATTACTTGAGGGTTATGGCGTGAGGGTGCAAAAATCCTGTTTCGAGGTCAACCTGTCAAGAAATGATTATCAGTCTCTCCTTAAGGATATCGAGGGCTTCTACAAGGCTGATGAAGAAGACAGCATAATAGTGTATGTGACAACCAAAGAAGAGGTGACTAGTTTTAGCCCCTACCATAGTGCTGAAAAATTAGATGACATTCTCTTCTTCTAAGCCTTTATAGACCTTTAATCATATGGTACACTATAGATAGTGTTTCCAGTAGGTCCTACATCTTGTGCCTCTAGCAACTGCCTAGAGCACAAGATATGGG # Right flank : CTTTTTTGAAAATTTTGAAAACATTATTGACACCGCTTCCAGAAAGTGTTAGACTAAAAGCACATTAAGGGCGCCCAATGAGTTGAAAAGTACTTTCAGCTTTTGGGTTTTTTTCATACAAAGATGAAGGAGTCGAATGAAAAAATTAGTATTTACTTTTAAAAGGATCGACCATCCTGCACAAGATTTGGCTGTTAAATTTCATGGCTTCTTGATGGAGCAGTTGGATAGTGACTATGTTGATTATCTGCATCAGCAGCAAACAAATCCCTATGCGACCAAGGTAATCCAAGGGAAAGAAAACACGCAGTGGGTTGTACATCTGCTCACAGACGACATCGAGGATAAGGTTTTTATGACCTTATTACAGATTAAAGAGGTGTCCTTAAACGATCTGCCTAAACTCAGTGTCGAAAAAGTTGAGATTCAGGAGTTGGGGACAGATAAACTGTTAGAGATTTTCAATAGTGAGGAAAATCAAACCTATTTTTCAATTATTT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATATAAACCTAATTACCTCGAGAGGGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 98034-97271 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDUT010000018.1 Streptococcus thermophilus strain Nect13 Contig_18, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 98033 28 100.0 33 ............................ TATACCTATATCAATGGCCTCCCACGCATAAGC 97972 28 100.0 33 ............................ CGACACCACTAGGGCGAGTCTGAGCGCCCCCAG 97911 28 100.0 33 ............................ CGCAACCCCTCCTTAGACATGGGAACAGTACTA 97850 28 100.0 33 ............................ CTGTATTATCGGCGAATAGATCAGATTCTTCTG 97789 28 100.0 33 ............................ ACCCTTACAAGGCTGATAGACCTTTGTCGTTTG 97728 28 100.0 33 ............................ CTCGTTTAAATTTGTAGTTATCATTAACAATAT 97667 28 100.0 33 ............................ CAAGGTAAAATTGCCGACAATGTTGGAACGTTG 97606 28 100.0 33 ............................ TATACATTACCTCATTTCCAGCTGAGAACATTG 97545 28 100.0 33 ............................ TCAGCGCCTCGACAAGCATCAAGAAGAACAGAA 97484 28 100.0 34 ............................ TGTACTGGTTGAGTATTCAAGGTAGGTGTGCCAC 97422 28 100.0 34 ............................ ATACTCAACTTCCTTACCCTTAACCCCTTTCAAA 97360 28 100.0 34 ............................ TGGTCGTGTGTTTGGCATTGGCTCAATGGGAACA 97298 28 96.4 0 ..........................T. | ========== ====== ====== ====== ============================ ================================== ================== 13 28 99.7 33 GTTTTTCCCGCACACGCGGGGGTGATCC # Left flank : GAGAAAAAGAATACAATCATTGAGATTGGAGCTGTCAAGTTTAATGGACAACAAGTAGAGGAATTTAATGCTTTGATTAAGTATGAGGAGAAATTACCTCCTACAATTTTTAAATTGACAGGTATTTCTAAATCCTTATTAGATCAAGAAGGACGTGATTTAAAAGAAGTACTTTCTGAATTCTTATTGTTTATTGGTGATTTAACTTTAGTTGGCTATAATATCCATTTTGATATTCAGTTTATCAATAATAAACTGAATAAATTTGGTTTACCCTTATTAATAAATAAAACTCATGATATAATGAGATATGTCAAGGATGAGAAGTTATTCTTGGATAATTATCAATTGCAGACTGCCCTAAAGTCATATGGAATCGAGGATTCAGTTCCTCATAGAGCTTTGAAAGATGCTAGACTAATCTATCATTTATCAACTAAAGTAAATAAATTCTTAGCTAGAATGAAAGAAAAGTCTTAATTCCATTGGGATCTTTTAGT # Right flank : TACAAATTTAGGTCATATGGAGATACGACAATATCAATCGATTGGTTGAGGTCTCTTTTTAGATTTGTTAATTAGTTGATTACTTTTTAAGTATTGCCGTTGTAAGCAGCATATCTTAAAGATAGAGATGCTGTAAAACTTTCTCATAGACTACTACATATTGTTTTAGAGCTATGTTTTTTCTAATGGTTCCAAAACAATCGCTTTCTCTTTATATGCCCACCAAAAAAAAGCCAGTGGCTCTTTTTAAATATCATCTTAATAACCAGGTTCAAAGATTTCAATAATTTGAGTCAGATAACCTGCATGTAAACCGATTCGATAGTCAACATTTGGCAAAGTCTTAACCAAATCATTCAGTTCTTTATCTTTGCTAAACTTATCAGCCAAAACTGGTAATTCAACGACAAGGAGTTGTGAGTGATCTAGTTGGAGGTAACTACTGTTGACCTTGATATCAGGACGAAGTAGTTTAAATATCGCTTTATCCGAAGTTTGGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.80,-9.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //