Array 1 17837-16681 **** Predicted by CRISPRDetect 2.4 *** >NZ_CMYC01000039.1 Neisseria meningitidis strain NM1937, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 17836 36 94.4 30 ........G...A....................... TTTTTGTATCCATTCCCAGCCGGAAATTAA 17770 36 100.0 30 .................................... TACCCACGGCGGAAACCATTGCCACAAAAC 17704 36 100.0 30 .................................... AGTATTCGTCGATGATGGAAACTCGAGCAT 17638 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 17573 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17507 36 100.0 30 .................................... AACGGCAACCCACTAAATTTTGCAAATGCG 17441 36 100.0 30 .................................... CCAAATAGAAATACATACGCCGAGTAATTA 17375 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 17309 36 100.0 30 .................................... CCGTTGATGACGGATGTGTCGGGTTGCGGA 17243 36 100.0 29 .................................... TCGGCCGCTTTATTTCTGCCATATCGACG 17178 36 100.0 30 .................................... CCTATGCCTGTTATTGTTTTCAGCCTTTTG 17112 36 100.0 30 .................................... TTTAAAACCGCAAACCAGTTTGTATCCTAT 17046 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTGATTTTGC 16980 36 100.0 30 .................................... AAAACCAACCGGGTATTCATACACAGCCAA 16914 36 100.0 30 .................................... TTGCGTCTATGGTGTCCTTTGAGATGTCCA 16848 36 100.0 30 .................................... AATAACAACCATTTTGTTATTTCGATTTTT 16782 36 100.0 30 .................................... TTATGCCGTTTTCATCCGGCTTGAACATTT 16716 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCT # Right flank : ACTTCGACGGGAAATCCTTATTTCATAAGGGTTTCCCGTTTTATTTGTTATGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACACAGTCTGTTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : NA //