Array 1 107037-106397 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYPF01000005.1 Salmonella enterica strain BCW_4887 NODE_5_length_352627_cov_1.59144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 107036 29 100.0 32 ............................. CGCTCGCCAATACGCGGAAAACTGTCAGCGTA 106975 29 100.0 32 ............................. AGCCAGAAAGTCACAAATGCGAGGAGTCAGCC 106914 29 100.0 32 ............................. ACGGGTTTGATATCAGCCTCACCGGATTTGGA 106853 29 100.0 32 ............................. AGAGCGAGCACGTCCGCCGTAAAATTGCCATG 106792 29 100.0 32 ............................. AATATATGGCGCTCACGCGCATGAGCATTCTC 106731 29 100.0 32 ............................. GAACGACAATAAAGCATGTGGCAATTGCGCCG 106670 29 100.0 32 ............................. CAGGGCAAATTCATCCGCCGCTGACCACTGGT 106609 29 100.0 32 ............................. GACGCTTACATCTCACCGAGAGATTTTGAGGC 106548 29 100.0 32 ............................. GCGTATCCCGAAATCACGTTCAAGAAAAATCC 106487 29 100.0 32 ............................. GTTGGGTTGCATAGATGACACGCTTATAAATA 106426 29 96.6 0 ............T................ | A [106399] ========== ====== ====== ====== ============================= ================================ ================== 11 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATGATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125040-123304 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYPF01000005.1 Salmonella enterica strain BCW_4887 NODE_5_length_352627_cov_1.59144, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 125039 29 100.0 32 ............................. GGCCCCCATGTCGCTGGCCGTGGATGTGTCGG 124978 29 100.0 32 ............................. GATTCATAATCCGTATGCCTTTTTTAAATAAA 124917 29 100.0 32 ............................. GAGATCACACCCACAGTCTCCAACTTCATTAA 124856 29 100.0 32 ............................. TACAGCAACGATATGATTCTTTGTTAAGTAAT 124795 29 100.0 32 ............................. TCTGAATTAATTAAAAAATTTGACGTCAACGG 124734 29 100.0 32 ............................. TGTACCGACCCGGCGTCTGGAACGGACAACCA 124673 29 100.0 32 ............................. GGTTTATGCCGTTGGACGAAATCGGCCAGGGG 124612 29 100.0 32 ............................. GGTGGACGGCCAGCCTGGTAACGATGGACTGG 124551 29 100.0 32 ............................. GGCGGCGATTTGCCCGCGTTTATCTTGCTGGT 124490 29 100.0 32 ............................. CCGCTTGAGTGGGCTGGTGGTGGGAAACTACA 124429 29 100.0 32 ............................. GCGTTAGCGCGTTACATCCGGTTTGAGGCTGA 124368 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124307 29 100.0 32 ............................. ACATCTCGGCGTCTCGCGTGATGTGGCAGGCG 124246 29 100.0 32 ............................. AACCAGCAGAGTTAGACGTGTGGCAGTTCGGA 124185 29 100.0 32 ............................. CCTATTGAGGTTCATCCCCGCTAACGCAGGGA 124124 29 100.0 32 ............................. CAGTCGGGCGGCACAGGATCAATATGAGCGTG 124063 29 100.0 32 ............................. GTACCTGTCAGTTTAGCTTCAGCGATGAAAAG 124002 29 100.0 32 ............................. TCACAGCAAACAATTTTGGACGTGTGTTGCGG 123941 29 100.0 32 ............................. CGGGCGCCAGTTCTTTTTGTTGCCTACCGGCT 123880 29 100.0 32 ............................. GCTGAGGGGATGGCGCTTAAAGACTGGCAGCA 123819 29 100.0 32 ............................. AATCACCGCCACTGGACGCGCTGCGTTTTGCG 123758 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 123697 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 123636 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 123575 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 123514 29 100.0 32 ............................. CGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 123453 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 123392 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 123331 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTAGTGCTGGTAAAAAGTAGTTTATAAACAATTATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCTGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAACTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTGTCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGAGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCTCTACCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //