Array 1 70177-71541 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQDL01000028.1 Pasteurella multocida strain 2297PM isolate swab isolate 1 contig_28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 70177 28 100.0 32 ............................ TCAAAATTAATCTACCAACTGAACTGGAATAT 70237 28 100.0 32 ............................ GATGTATTCCTCGCAATAAGAACGACCATAAG 70297 28 100.0 32 ............................ TCAATGTTTAAACGTTATAATCGTCTGTTTGC 70357 28 100.0 32 ............................ GTAGGGGGTAGTATGTCACTGGGTCGCTTATA 70417 28 100.0 32 ............................ ATTTCAGTTTCCTTGTGTTGTTTGTTAATCTT 70477 28 100.0 32 ............................ GGATCGATGATTGCTAGCAAGTAATCTTTGAT 70537 28 100.0 32 ............................ TTCCGATTTTTGATAGTCAAAGACTACTGAGT 70597 28 100.0 32 ............................ AAACGGTCGTGCGTCGTTCGGGTTGTGATCTT 70657 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 70717 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 70777 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 70837 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 70897 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 70957 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 71017 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 71077 28 100.0 32 ............................ TTTAAGCTACGTTTATCCGCAAGATTCACTAC 71137 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71197 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71257 28 100.0 49 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAATGTTCACCATCTTGAAAT 71334 28 100.0 32 ............................ GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71394 28 96.4 32 .........T.................. GTTGGTGCGAATTTCACATCTAAGCTTGAAAT 71454 28 100.0 32 ............................ AGTTAAAGCTAAGAAACTAACGGATATTGCGA 71514 28 96.4 0 ........................A... | ========== ====== ====== ====== ============================ ================================================= ================== 23 28 99.7 33 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTTAAGACCGGTGTATCCAATACCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAGACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCTAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGCGGGCGTCATGGTGGGGTTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGCACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 94472-91323 **** Predicted by CRISPRDetect 2.4 *** >NZ_LQDL01000027.1 Pasteurella multocida strain 2297PM isolate swab isolate 1 contig_27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 94471 28 100.0 32 ............................ AAATGGTAAACCAACAGTAAACACTAAGACAC 94411 28 100.0 32 ............................ TTTTTGATAAACATCCGACCTTAAATGAGAAG 94351 28 100.0 33 ............................ CTGTTGAGCTTGTATTCTTTAAAGAATGATTGA 94290 28 100.0 32 ............................ ACTACGTCTTGAACATTATATTCTAGCATTTC 94230 28 100.0 32 ............................ TTTCATGATATCATCGCCTTGTGGATTGAAAG 94170 28 100.0 32 ............................ TTATTGAAAATGCGGTAGTCGCCTTTATAAGT 94110 28 100.0 32 ............................ ACCCTCAGGAGTCACCCCACCTACTGCCATAT 94050 28 100.0 32 ............................ TCAATGGCTGCTTCTGCTGCTGCTTCTACCAA 93990 28 100.0 32 ............................ TAAGTCTTCTTTCTTCATCCTGTTGAGCTTGT 93930 28 100.0 32 ............................ ACCTGAAAAACCTTTTGACATTGACACGAACG 93870 28 100.0 32 ............................ TACACTTCTCACCGATCAAGCCCACTGAGAAA 93810 28 100.0 32 ............................ GGAACACTTCGATAAGAACACACATGAGCTTG 93750 28 100.0 32 ............................ AAATTATTGCCAAGTATGCAATCGGTCATGGG 93690 28 100.0 32 ............................ CTTGTCTGTGAACTCAGTTGGTGTCCATCCAG 93630 28 100.0 32 ............................ TTTATGGAGCAGGGGACGCTAAGATTGGTGAG 93570 28 100.0 32 ............................ ACTAGATGCTGGGAAGACGTGTTTAGTTTGGT 93510 28 100.0 32 ............................ ATATAAAGCCCGTCCGTAGGCTTCCTTACCGA 93450 28 100.0 32 ............................ TATAAGGCTCCTGTGGGAAGTCCTTGATGTCT 93390 28 100.0 32 ............................ TAAGAAATTACTAAATGTAGCGTAAAATGTGC 93330 28 100.0 32 ............................ ACTCATTTAGTCGACCGACAGGTCGCTTTGGA 93270 28 100.0 32 ............................ AATAAGACAGCCCTTTTGTGTTCTCCCTAACT 93210 28 100.0 32 ............................ ACTGATTTATTAAAGAACAAGTAAGTTAATTG 93150 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 93090 28 100.0 32 ............................ AACGTGACTGATTCGAGTTCCAAAGCTACCTG 93030 28 100.0 32 ............................ TCAAAAAATCATCTAAATAAATATCAGACAGA 92970 28 100.0 32 ............................ TATACCCCACAAGGTATTAATGTGCTAAACTT 92910 28 100.0 32 ............................ TCGAGGACATCTACCCCTTTATCATGTATTAA 92850 28 100.0 32 ............................ GCAATGCAAGACAGTAAAGCGTATGGAGCTAT 92790 28 100.0 32 ............................ CGCTGAAAAACATTATATAGAGGTAACAAGTG 92730 28 100.0 32 ............................ TTATGGTTAACTTATTCTTACAGGCGCACTAC 92670 28 100.0 32 ............................ TTTTAGACACGCAATTAGTCGACCAGCAGGTA 92610 28 100.0 32 ............................ GACGATAATATCAAAGAACTCCTTTATGTCAT 92550 28 100.0 32 ............................ GTTATCAGCGTCCACTAGGTCATTTAGTGTCT 92490 28 100.0 32 ............................ AAGCCCTTGTTACACCAACCACCTCTGTTGCC 92430 28 100.0 32 ............................ CAGCTCGCAATGATTCTGTTTGAAAAGGCGTT 92370 28 100.0 32 ............................ TTCGTCCGTAGTTACAAACAGCATAGCTCTGA 92310 28 100.0 32 ............................ TCTATATATTGTTTTTCATTGGGCTTGGTCGG 92250 28 100.0 32 ............................ TCCAAGCGCGAGGAGGGATAACCATAGGCATA 92190 28 100.0 33 ............................ CAGGAAAAAAACCGAAGTATTTAAGAGATTTCA 92129 28 100.0 32 ............................ ATTTACCCCTTCAATATCGGTTGTGTATTTCA 92069 28 100.0 32 ............................ CGTTGAAGAAACCTCCACGCCTTTAAAATCAA 92009 28 100.0 32 ............................ TTTGAAAACCCGGTATTTTGATTTTTCTCAAC 91949 28 100.0 32 ............................ ATTTATCCCAAAGCGACATGTCATCAGGCATC 91889 28 100.0 32 ............................ CATTTGGGGCAACGAATGACGAAAAGCGCACA 91829 28 100.0 32 ............................ TCTTTCCGTTTATCTTTGAAAAAATATCATAT 91769 28 100.0 32 ............................ GTTTAGTAACGGGTCAAGCGGAAGATGAAATC 91709 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 91649 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 91589 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 91529 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 91469 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 91409 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 91349 27 85.7 0 ....................T..C-..T | ========== ====== ====== ====== ============================ ================================= ================== 53 28 99.4 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //