Array 1 308095-308394 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDFE01000019.1 Bacillus safensis strain G25-35 G25-35_contig000019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 308095 32 100.0 36 ................................ CGAAGTACAGCGCACAACAAGCGATGCGATCTTCGT 308163 32 100.0 34 ................................ AATCATCCGTCTTTTTCCTCCTCTAAAACAACTC 308229 32 100.0 35 ................................ TCAATCGCCTAGAGGCTCTTTTTTAAGAGCTTTAC 308296 32 96.9 35 ...............G................ AGTGCACATAGCGTTGATCCAACGCAAATTTGAGC 308363 32 96.9 0 ...........C.................... | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 98.8 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : ATGAAAGAAATAGCCGATCAGTTAGGCGAAACAAGACAAAACATCTCAAACATTCACAAAAAAGCACTCAACAAACTAAAAGAAGAAACAGGGGGAGATGTCCGTGCACGAAGACAAAATGACCAATGGAGAAATGGAAGAACTCATTGAAACCTTCACACCCATGATCAAAAAGAAACTACAAAACACGGCATATCAAGAAAGAGAAGACCTCGAACAAGAACTCTATATCAAACTCATCGAAAAAATAGACCGGCTGATTTACCAAGAAGGACCTGGCTTTTGGGAGTTTATTGTGGAATATATGACGAAGATGTAAGAAAGGCTTATGATGCGAATGTGAGGTGAACATAAAATCCCCGGGACATTCGCACCTTTTTATTCGACAAAAATGAGAGAAAATGTATATTATGTAGAGGTGAAAACAAAATCCTATATTGAAATTTGTGAATTTTAACAATTATTCCCTAAAAAATGTTACAATTAGGGCGGAAATCGCA # Right flank : TATTATCTGTAATATGCGGAAGTTTAAGAGTGCTTAGCCATTCTTGATTTTAATAAGAGAAAACAAAAGCATTTATGTTTGGTCGAAAATTATTAGTGGAGTAAATATATTGATTAAAGTTTACTTTTCTTCAAAGTTTGGGAGAAGAGTAGTCATTTTAGTTAATAAAGAAAATTGAAGACAATAAAATTTATTAGAATAGCTCTCCTCGGATATGTTAGAAGAACATTAAATAAGATTAATGAATTAAAAACTTGGTGCGAATGTGAGGTGAACATAAAATCCCCAGGACATTCGCACCTTTTTATTCGACGAAATTAAGGAAAAATGTATATTTCACTAAGGAGAAAACAAAATTCTATATTGGAATTTGTGGATTTTTACAATCATTCCCTAAATAATATTACAATTAGGGCGGAAATCGCAGTCGCACTCTATATGGGTATGTGGATTGAAATTCGCAGTACCTCGCAGTCACTCTTGCCTGTTTCAAGGTCGCA # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 309307-309939 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDFE01000019.1 Bacillus safensis strain G25-35 G25-35_contig000019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 309307 32 100.0 37 ................................ CAATAATAATTTTGGCGGAACAATGACAGCAGGTCGA 309376 32 100.0 34 ................................ CAGTGATGCTGATGGCTTGTGCAACCCACTTTTT 309442 32 100.0 34 ................................ ACATCTTCGATTGTTTGATAACCTTTACGTCCAT 309508 32 100.0 35 ................................ TTACAGTAGAAGATAGGTGTAACAGTATATTCAGG 309575 32 100.0 36 ................................ CCAAACGCCTTACGTATTGCGACGACGGTTCTTTTT 309643 32 100.0 34 ................................ TTCACTTTTCGCTATGTTGCATTTTGTTTTAATC 309709 32 100.0 33 ................................ AATTGAATCCACTTAGGAATATTGTTTGTGCTG 309774 32 96.9 35 ...................T............ ATGAGCTTTGTAGGGTTAGAAATGTAATCCCACAC 309841 32 90.6 35 ...........T...........A...T.... AATGATTGTGTGACCATGCTCAGGTGCTTCTATGT 309908 32 68.8 0 ......A.T.....T....TA......AGGTA | ========== ====== ====== ====== ================================ ===================================== ================== 10 32 95.6 35 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : GGCGGAAATCGCAGTCGCACTCTATATGGGTATGTGGATTGAAATTCGCAGTACCTCGCAGTCACTCTTGCCTGTTTCAAGGTCGCACTCTATATGGGTGTGTGGATTGAAATTATCTAAAATTAGTTCAGCTTGCGTCTGATTTAGTCGCGCTCTATATGAGTGTGAGGAATAAAATTCTTGTCAGAAGGTAGCTTGAAAGATATATTGACATTGCGCTTGATATAGGTGTGAAAAACATAACTGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTACCATCAGTAATAGTTTTTAATTAAATAGGATTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCCTGGGGCATTCGCACCTTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTATGAAAGGGAAAACAAAATTCTTTATTGAAAGTTGTGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGAGCAGAAATCGCA # Right flank : AGCTTGAAAGAAATGTTGACAGTTGAGCTTGATTTAGGGGTGAAAAACATGACTCTGGCTCAGTAGACATATTTTTAAATGAATTCAAACCTGTTGAGGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAGTAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAACCCCCGGGACATTCGCACCTTTTTATTCGACAAAATGAGAAAAAATGTATATTTTATGAAAGGGAAAACAAAATTCTTATTGAAATTTGAGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCGAAAATCGCAGTCGCACTCTATATGAGTGCGTGGATTGAAATAAGAAAAAAAGAAAGACCTTTGACAAAGTATCCAGGTCGCACTCTATATGAGTGCGTGGATTGAAATCTTTCACATCCACATATCGAAGTTGAGTCAGCAAAGGTCGCACTCTATATGAGTGCGTGGATTGAAATT # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 310271-310503 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDFE01000019.1 Bacillus safensis strain G25-35 G25-35_contig000019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 310271 32 100.0 35 ................................ AAGAAAAAAAGAAAGACCTTTGACAAAGTATCCAG 310338 32 100.0 36 ................................ CTTTCACATCCACATATCGAAGTTGAGTCAGCAAAG 310406 32 100.0 34 ................................ TGTTTTGCTTGAGCGTTCGGAAAGTTGAACACAG 310472 32 81.2 0 ...........C......T...AAT..T.... | ========== ====== ====== ====== ================================ ==================================== ================== 4 32 95.3 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : CTGGTCGCACTCTACATGAGTGTGTGGATTGAAATATGAGCTTTGTAGGGTTAGAAATGTAATCCCACACGTCGCACTCTATATGAGTGCGTGAATTTAAATAATGATTGTGTGACCATGCTCAGGTGCTTCTATGTGTCGCAATTTACATTAGTGTATGGATTAGGTAGCTTGAAAGAAATGTTGACAGTTGAGCTTGATTTAGGGGTGAAAAACATGACTCTGGCTCAGTAGACATATTTTTAAATGAATTCAAACCTGTTGAGGAAACAGTGAAATAAGTATGTTTTCAAGAGCAATAGTTTTTATTTAAGTAGGATTAAGAAAAATTCGGTGCGAATGTGAGGTGAACATAAAACCCCCGGGACATTCGCACCTTTTTATTCGACAAAATGAGAAAAAATGTATATTTTATGAAAGGGAAAACAAAATTCTTATTGAAATTTGAGGATTTTGCCTATCATTTCCTAAAAAATGTTACAATTAGGGCGAAAATCGCA # Right flank : TGATTATGTCTTAAACGGGTATGTCTCAGAGATCATGATCTTACAACACCCTCTTTCAGATACAAAAGCCATCAAAATAGACTGTTCATATGTATAGTGAAAACATGACTCCTTGCAGTCATGTTTTTTTCTTCTTCTTTTTCCTAAATAAACCTTAAAAAATCTCAAAATAAGTCGAAATGAAAAGTAGTCATTTAGATTCAAATTTTATCCATTCGTAATGAATGATGAAGGAGGAATTGGTTTGGGTGAAACGGAGCGAACCGGTAAAGTGGAGCAGCTGATCTTAGAGAATTATCAAAGATTAAACAGCATGATATCCGAAGAAGTCGACTTTGCTTCTAACCATGGCGGGCTGACAGGGGATTCTAGAGAAGTGATGTGGATGGAGTTTTTTCGGAAAATCATTCCTAAAAAATATTCGTTAGCACAAGGTGTCATCATGATTGACTCAGAAGGAAATCATTCTAACGAAGTCGATATTGCCGTATTTGATGAGC # Questionable array : NO Score: 8.62 # Score Detail : 1:0, 2:3, 3:3, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 318147-318509 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDFE01000019.1 Bacillus safensis strain G25-35 G25-35_contig000019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 318147 32 100.0 35 ................................ GACCTCGAAAGGCAACTAAAGAGGATTGCACAATT 318214 32 100.0 33 ................................ CAACAGACACGAAAGGCAGGAGCTCTCCTGATT 318279 32 100.0 33 ................................ ACCAAGTCGTCTAACTTGAACTCCACCATTTGT 318344 32 100.0 38 ................................ TTCATCAGACACAGCTTCCTGCACTTCGCATCCTACGT 318414 32 93.8 32 ........................G..T.... TAGCCGACGGTTCAGCTTGATGTTTTTTTAAA 318478 32 84.4 0 A..................T.A...A.A.... | ========== ====== ====== ====== ================================ ====================================== ================== 6 32 96.4 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : TGCCTGAGACAGTAAAGGAAGCATTCAAAGTAGATGTGATGACACCACATCATTCAGACTATAACAGCGTCAAGCTAGATAAGATGAACAAAGGGGGAAGTGTCCCAGCCCCTCGAGACGATGACTCACCAACACCGATTCATTTCTTAACGGTGGTCAACGGCCGCTTTCAACTTCTATTGAAAACAAAAAAGAATCTACCAGAAGAAGCGGAATGGCTCGAACTCGCCAAAACCATCTTACTAGGCGCTTTAGAACACGAAGGAATCGGTGCTAAAACAAATGCAGGTTATGGAAGACTTAAAATGGACGACGCCATTTTATAAGATTAAGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTGAGTGTGAAAACAAAATTCTATATAGAAACTTAAGGATTTTGACGATCATTCCCTAAAAAATGTTATAATTAGGGCGGAAATCGCA # Right flank : TTCTTGTCAGAATGTAGCTTGAAAGATATATGGACAATTGCACTTGATATAGGTGTGAAAAACATAACTCTGTCTCACCCATTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAATAATAGTTTTTAATTAAATAGGTTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACAAGAGTGCGTGGATTGAAATTGGTTCTACGAAAGTAATTGGTATGGTTTATTCTGGTCGCACTCTACAAGAGTGCGTGGATTGAAATCTTTGTAAGTGACAGTAGCTTTTACGGTTACTTGTCGTCGCACTCTACAAGAGTGC # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 318854-319283 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDFE01000019.1 Bacillus safensis strain G25-35 G25-35_contig000019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 318854 32 100.0 35 ................................ TGGTTCTACGAAAGTAATTGGTATGGTTTATTCTG 318921 32 100.0 36 ................................ CTTTGTAAGTGACAGTAGCTTTTACGGTTACTTGTC 318989 32 100.0 33 ................................ ATCACCGCCCGCTTCTGGTTCGATCTCAGTTAA 319054 32 100.0 35 ................................ ATTTTTTCGAACACCTCGTCTAGCGTTGCCTTTGG 319121 32 93.8 34 .............T....T............. GATAATACGGCCAAACGTCTCCCGTTTTCGTCAA 319187 32 90.6 33 ..........G..TA................. AAAACGTAGTTCAGCAAAGAGTCGAAGTGTACA 319252 32 81.2 0 ...........T.T.....T.A...A.A.... | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 95.1 34 GTCGCACTCTACAAGAGTGCGTGGATTGAAAT # Left flank : ATATGAGTGCGTGGATTGAAATTTCATCAGACACAGCTTCCTGCACTTCGCATCCTACGTGTCGCACTCTATATGAGTGCGTGGGTTTAAATTAGCCGACGGTTCAGCTTGATGTTTTTTTAAAATCGCACTCTATATGAGTGTGAGGAATAAAATTCTTGTCAGAATGTAGCTTGAAAGATATATGGACAATTGCACTTGATATAGGTGTGAAAAACATAACTCTGTCTCACCCATTTTATTAATGAATTCAAAGCTGTTGATGAAACAGCGAAATAAGTATGATTATCATCAATAATAGTTTTTAATTAAATAGGTTAAGAAAGATTCGGTGCGAATGTGAGGTGAACATAAAATCCTTGGAACATTCGCACCTATTCATTCGACAAAAATGAGAAAAAATGTATATTTTTTAAGGGTGAAAACAAAATTCTATATAGAAACTTGTGGGTTTTGACGATCATTTCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTCTTGTCAGAAGGTAGCTTGAAAGAAATATTGACAGTTGCAATTGATTTAGGGGTGAAAAACATGACTCTGGATCTGAGTAGTCATGTTTTTAAATGAATTCAAAGCTGTTGATGAAATAACTACCTTTAAGCAATAGTTTTTAATTAAATAGAATTAAGAAAAACTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGAGCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCAGTCGCACTCTACATGAGTGCGTGGATTGAAATAACGCTATGAAATAAGGACATCAACGCTTGATGTGTCGCACTCTACATGAGTGCGTGGATTGAAATACTGTAGTCGGTCAATTGTGGTACAGGAATTTCGTCGCACTCTACATGAGTGCGTGGATTGAA # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACAAGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 319622-320309 **** Predicted by CRISPRDetect 2.4 *** >NZ_LDFE01000019.1 Bacillus safensis strain G25-35 G25-35_contig000019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 319622 32 100.0 34 ................................ AACGCTATGAAATAAGGACATCAACGCTTGATGT 319688 32 100.0 33 ................................ ACTGTAGTCGGTCAATTGTGGTACAGGAATTTC 319753 32 100.0 33 ................................ TATAAGCGCGCAGAAAAGCGCCTGGATCAAGTA 319818 32 100.0 33 ................................ CTCTTGTGCCTGTGGAAACTATCGAAGGACAGC 319883 32 96.9 34 .............A.................. AAGTTGTGACCTACCTCTCTGTAAAATGTGTAGC 319949 32 100.0 34 ................................ CGTCAACCGCTGACAATGGAAGTGGCACACCATC 320015 32 100.0 33 ................................ TATATCTGCATTCAGCAACTTTATTGCATGTTG 320080 32 93.8 35 ...............G....A........... CAGACTGAGGGTTCTCACACGAAAGAACAAGACTC 320147 32 96.9 34 ...........T.................... TCGTTTGGATGGACGAAAAGGACAGGTTCAAATA 320213 32 93.8 33 .........A..........A........... GGTGAATGGTGGGAAAAGACAGGAAAGCTTGGT 320278 32 68.8 0 ..T......A....A.....A.A...CACTG. | ========== ====== ====== ====== ================================ =================================== ================== 11 32 95.5 34 GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Left flank : TCGCACTCTACATGAGTTCGTGGATTGAAATGATAATACGGCCAAACGTCTCCCGTTTTCGTCAAGTCGCACTCTGCATAAGTGCGTGGATTGAAATAAAACGTAGTTCAGCAAAGAGTCGAAGTGTACAGTCGCACTCTATATGAGTGTGAGGAATAAAATTCTTGTCAGAAGGTAGCTTGAAAGAAATATTGACAGTTGCAATTGATTTAGGGGTGAAAAACATGACTCTGGATCTGAGTAGTCATGTTTTTAAATGAATTCAAAGCTGTTGATGAAATAACTACCTTTAAGCAATAGTTTTTAATTAAATAGAATTAAGAAAAACTTGGTGCGAATGTGAGGTGAACATAAAATCCCTGGAACATTCGCACCGTTTCATTCGACAAAAATGAGAAAAAATGTATATTTTTCAGGGGTGAAAACAAAGTTCTATATAGAAACTTAAGGGTTTTGACGAGCATTCCCTAAAAAATGTTATAATTAGGGCGAAAATCGCA # Right flank : TTTCTGCGAATTACATAAATTCAAATATCTATCCAGTTCAAAATCTACACAAATGATTAATCAAAATAATGTACTTTCCCCTAAATCCAAGCCCTACACAACAAAAAAAGACTCGCTCACACAGAGCCGAGTCTTAATTTTTTTTGCAGTTTTTCTTCACTGAAAATCCAGCCGGTATAGGAATTTTTGATTTGGTGGTCCATGTCGATATGGCAGATCGCGACAAAAGGATAGTGACCTTTGCTGCGGTAGCGCAAATCAATGAACCGTACCTCATAATGATCCTTGTATTTATCCACTTCCCACCGGTAGACAGGGGAGAAGGAGAGAAAGGCTGAAATGTTTTCGTCTTGTTTGGCAATTTTCATAATCTCTGTGTCAGGGACCGGCACCCGGTTAAAGGTGTCTAAAATGACAACCTCTCCATTCATACTGCGCCCAACATGGAAAGAGGATTTACATTTCACGGCAATGCGCCATTGTCTGAACTTCATTGTAGG # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTACATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //