Array 1 14674-14448 **** Predicted by CRISPRDetect 2.4 *** >NZ_BITO01000038.1 Clostridioides difficile strain FD194 sequence038, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 14673 29 100.0 37 ............................. AAAGTTAAATTTATTACATCTAATTCTGTCTCTTCAT 14607 29 100.0 37 ............................. ACAACAGCACCATAAAAAAAACCATTCCTAAAAAACT 14541 29 100.0 37 ............................. AGTATAATGTTGAAAAGTTAGAGAGTACAATCAAGAA 14475 28 75.9 0 ......C.........AAT....AG..-. | ========== ====== ====== ====== ============================= ===================================== ================== 4 29 94.0 37 GTTTTATATTAACTAAGTGGTATGTAAAT # Left flank : TTAAATATCTAGGGTTTTATTTGACGTGCTCTTTTTTAGATAGTAAACTTTAAAATATAGATATTAATTATATGAATATAATAAAAAAAGTACTAATGAGTTACACTAGTACTTTATAACTACTTTTACATGTTTTAACTGTATAAAACAGTGGGTATAGTTCAGGCAGGAGTGACTTTAGTTTTGAACTAAAAATCAAGTTCAAAAAGAATAAACATTAGTATTTGAACTTCACTTTACATCTAAATAGATTGTAGTTCTTCTTGTTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATATTTATGATATAATAAAAATGTAAATAGTTTTGCAGTGAGCGATATTTGTTACAAAGTAGGGCTTAACGCTTGAAATATAAGGTGTTGAGGGTATATGATAAACTTTATCATTTGCACTACTCATGGTTCACTGCAAATTTAAGAGAGTTGCACATGTGTAAGTATTGAAAATGCCCAGTTTATTTTGGG # Right flank : AAAACATGTATTTATACTTAAATTCTGTACCTATATAAAAAAGTGAACTCTGTCAACAAAGCACTTTTTTATATAGATGAATTATCATTTTGTTTTAAGATAGAACATACTAATGATAAATGTTTATCATTAGTATCTGTATGTACATAAAAGTTTAATTTTTTATATAAATTTGCTCTTTAGAAAAATGGGCAGTATCAATAAATATATTGTCTAAATTTTTTTTAGGAACTAGTTGACTAGCCATAAGATTAGCTTCAACTCTTTGATTGTTAGACTATGAAATTAAATTTAAAGGTTCATTCTTAGTCATATAAATAGCTTTATTATTCGTATGTACTATAACAATTTTTGCCATCTGCTTTTGATAGATAAAGAGCTTTATCAGCTTTAGAAAATAAATCTTTATATAATTTAGTTGAATCATCAGTGAAGGCAATACCAATGCTTAATGTTATTTTATGATTGTCCTTTACTTTTATTTTACTTGCATCATTTAA # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTAAGTGGTATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 21049-20098 **** Predicted by CRISPRDetect 2.4 *** >NZ_BITO01000004.1 Clostridioides difficile strain FD194 sequence004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 21048 28 100.0 39 ............................ TTTTTTTAGTTAGTATTATTTTTGCTTCAAGGGGCAATG 20981 28 100.0 39 ............................ TATAAAAAATGCAAATATAATCAAAATTATCATTCCTAA 20914 28 100.0 39 ............................ TATAGGTTACAGCAGTAAACAGACTAACTGGAACAAATC 20847 28 100.0 37 ............................ TTCTGATGACATGAAAGAAATACTTGATATTTTTAGT 20782 28 100.0 38 ............................ TATTAAAAAAGAGTTAGAAGGTGGATTTGCAAAAATTA 20716 28 100.0 37 ............................ TAGTTGTCACAATATTATTTTTAATTTCTCCTAACTT 20651 28 100.0 38 ............................ TTTAGGTTTACAATTTAAACATCTAAAGTCAAGTAAAA 20585 28 100.0 37 ............................ GCCAGAAGAAGCCGCATCTGCAATAAAGAAGTATGGA 20520 28 100.0 38 ............................ GATTGAAAAAACGTCCAAATAGCAATATAATTTAATTA 20454 28 100.0 39 ............................ GATTTATGTCTGATTTGTGTCCAAAAATAACCGATTTGT 20387 28 92.9 38 ................G...T....... GACACCTCCAAACACTGCAATTTCTCCTGTTTTCAATA 20321 28 92.9 37 ................G...T....... GCCTATAGGAAGCTTAACTATATGTTCATAAAAAACA 20256 28 92.9 38 ................G...T....... TAATATAACAAAGTGGATGTTCTCTAAAAATAAAGAGG 20190 28 100.0 37 ............................ TTGCTGTGATTTCACTAATAAAACAATTAATAATTGT 20125 28 75.0 0 ...A............G....GAAA..C | ========== ====== ====== ====== ============================ ======================================= ================== 15 28 96.9 38 GTTTTAGATTAACTATATGGAATGTAAA # Left flank : TATAATAATTGTAGCAAGGAAAATAATAATTGAAAAGTGCTAAGAGTGGTTATTTCCATATTTGAATACCAAATTCCATAACGGAAGGAGGTGTAACAGTATGGTGATAAATTTTTTATTGAGTATACTGGCTGGTGTTATATCAGCCTTCATGTATGAGAAAATAAAAAACCACTCAAAGGCCAATAAGAGTGGTTTAAAAAAATAATTCTTTAAATCAATTTTGATGGAAATAGCTACTCTTGTATAAAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGTTCGATTTTTGTAATAAAATATGGCTTAACAATTGGAATACAAGGCATTGAGGGTATGTGATAAGTGTTATCATTTGCACTACTACCCGCTCACTGCAAATTTAAGAGAGTTGTATATGTGTAGGTATTGAAAATACTCAACTTATTTTGGG # Right flank : TAAATAAACAAAGAAAGCACTTACAAATATGTAGGTGCTTTTGTTTTGCTCAAATTGGTCGGTTGAGTGAAATAATTAGAAAAAATTAGTAAAAACTAGTAAAAACTCTTGAAAAGTGTCGCGATACAATGTATAATTATATTATCGCGATACAGAAAAGAGGTGAAAATTATTACTGATAGCAGTAGAGCAGATTACTTCAAGCAGAGACGACAGAATAAGAAAACTTTTAGTGTTCTACTAGATAGAGAGAAAGTAGAAAAAATTGAAGAACATTTAAAAAAGCAGAACAAGACTAAAACTATTTGGCTTGAAGAAAAGATTAATGAAGAGTTAGAAAAAGAGGAATAAAAAATAAGAGACGTTCTCCCCGACCAAAGATTGAACATCCCTTATTGACGTATATTATATACACTAACTATAGTATACGTCATTCCTTAAAAAAATTCAATTAAGGAGTGTAATAGTTATGGAAAATTTAATAGTAAAAGAGTTTAATG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAA # Alternate repeat : GTTTTAGATTAACTATGTGGTATGTAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 22163-21651 **** Predicted by CRISPRDetect 2.4 *** >NZ_BITO01000004.1 Clostridioides difficile strain FD194 sequence004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================= ================== 22162 29 100.0 35 ............................. CACAAAAAATATTGTTTCGGTGATAAGGTTGACCA 22098 29 100.0 61 ............................. GCTTCAATTTCTTTAGCTCAAATAATACTAGATTCTTTAGCTCAAATAATACTAGAAAGTG 22008 29 100.0 37 ............................. ACATTTAAACCTGTTGCAAAAGCATTATCTGAATATG 21942 29 100.0 38 ............................. TAATTTAATATTCTCTGGATTTGGTTCTCCATTTATGC 21875 29 100.0 36 ............................. AGAACTTTTTTATATCAGAAGTACTTGACATGATTG 21810 29 100.0 36 ............................. ATAGATAGTTTTTGTTCTATCTTAACTCTTAGAGGA 21745 29 100.0 37 ............................. GCTTTTGGGGAAAAACTAGGTGTCAGTAAAGATGTTA 21679 29 89.7 0 .....................C.TA.... | ========== ====== ====== ====== ============================= ============================================================= ================== 8 29 98.7 40 GTTTTAGATTAACTATATGGAATGTAAAT # Left flank : ATTATATGTTATAATAATTGTAGCAAGGATAATAATCGAAAGTGCGAAGGGTGATTATTTTCATATTAAACGCCAAATTCCAAATAAGGAAGGAGGTGAAATTATATGATAGGTTTTTTATTAAGCATACTAGCTGGTGTTATATCAGCTTATATTTATGACAAAATAAAAAATCACCCAGACGCCAATAAGGGTGATTTAAAAAAATAATATTTTCACTTAACAACTGAAAATAATCACTCTTTGTAGGAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGAGCGATATTTGTTACAAAATATGGCTTAACACTTGAAATCTAAGATGTTGAGGGTGTGTGATAAGTGTTATCAATTGCACTATTGCCCGCTCACTGCAATTTTAAGAGTATTGTATATATGTAGGTATTGGAAATGCTAAGTTTATTTTGGG # Right flank : TAAAAATACTGAAAAACACTTACTTTTATGGTAGGTGCTTTTTTATATTAAAATCTGTGTACTTAATTGAAATATTTGGTAAAATATGTAAGAATTGTATGATATAATAATTGTAGCAAGGAAAATAATAATTGAAAAGTGCTAAGAGTGGTTATTTCCATATTTGAATACCAAATTCCATAACGGAAGGAGGTGTAACAGTATGGTGATAAATTTTTTATTGAGTATACTGGCTGGTGTTATATCAGCCTTCATGTATGAGAAAATAAAAAACCACTCAAAGGCCAATAAGAGTGGTTTAAAAAAATAATTCTTTAAATCAATTTTGATGGAAATAGCTACTCTTGTATAAAGTAAATTATTTCCTTGCTTTTATTATACCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAAATGTAGAGATTTTGCAGTGTTCGATTTTTGTAATAAAATATGGCTTAACAATTGGAATACAAGGCATTG # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 3027-3713 **** Predicted by CRISPRDetect 2.4 *** >NZ_BITO01000070.1 Clostridioides difficile strain FD194 sequence070, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 3027 29 100.0 37 ............................. TTGTCATAGTAGCGACTTATTACAAAGTATTTTTCTA 3093 29 100.0 37 ............................. TACATCCTCATTAATTTCTTTGCTATCCCAAACAGCA 3159 29 100.0 38 ............................. CTCTTACGCTTTTCAATCACTTTTTCCTTGCTAAAATT 3226 29 100.0 36 ............................. TTGGAAATAAGTATAAAGACAGTGATATGGAAATGG 3291 29 100.0 37 ............................. TATCCATTTCATATTTAGATAAAATCTCTTTAAATGC 3357 29 100.0 37 ............................. ATGTTATTACATAAAAATTCTTCATCTATAACTTTAA 3423 29 100.0 36 ............................. AAAATAAGGGTTTAATTTCCCTGGTGTCGAGGAATA 3488 29 100.0 36 ............................. TTTAAATGAAACTCTTGAAATAGTTGACGTAGTAGC 3553 29 100.0 36 ............................. TATATATTAGATGTCAATGTCAAGGATACAAAATTT 3618 29 96.6 38 .......................T..... CCATCTTTTGTTGCTTTACATAAATTTATATTACTTAC 3685 29 82.8 0 ........C........CA....A...T. | ========== ====== ====== ====== ============================= ====================================== ================== 11 29 98.1 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : TAACCATAATAAAAATAGATATCTATTTTTAGATTAAAAATAATATATCATAAATAAAATAATAAGAGGTAGATACAGTTTTAAGTGAATACAAAAGTTTTTAATTAAACTATGCTTGTTCAGATAGATATTTATTTAAGAAAAAAGACCATTAAAAGCAATATACAAGAATGATATATTAAATTGATTAAACAAGCATAAATATTATGTAAAAAACTTTAAGTTATAGAATTTAAATCTAATGTAGATAGATTACGTTTTTTCTTGTTTTTATTATGGTATAAATTGGTATCAATATTCAAAAGTAATATATTTATGATATAATAAAATTATAGAAATTTTGCAGTGAGCGATATTTGTGAAAAAATTTGGCGTAACAGTTGAAATATAAGGTGTTGAGAGTGCATGATAAGCGTTATCAATTGCACTATTGCTCGTTCACTGCAAATTTAAGAGAGTTGTATACGTGTAAGTATTGAAAATACTAAGTTTATTTTGGG # Right flank : TTTCTTTTAATGTGTTATCTTATGATTATCTAGTTATATTAGCATACAAAAATATAATAAAATTACACTATATTATAAAAACCAAAAGGTAGTATAGAAATCCTATTACCTTTTTATTATTAATTTTGTCAGTGTTTTATTATAAATAGCTTATATAATTACACATTTTTTCTGATTAAATAATATGATGCTATTGTTATAATAGATACTAATGTTAATGATGTTATTGCAGTATCTAATCTTATTATTTAATAAACTCATTTCTATATATTCAAGTTCTATTAAATATTGATAAAATATTTCTAGTTTAACAGCTTTTTCTCTATCTATATTTCATACTTTAACTCTAATTTATCTAAGGCTTTTTTATTACAATAATTAACTTTATGTTTAATTAAATATCTTATTGTAGCACCTATTACAACTTCCACTCTAACAAGCATAAATATAATATTCCATCCAAAAGTTAAGAGGGTATATCTTTTTTATGATGAGAATGG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 3034-2677 **** Predicted by CRISPRDetect 2.4 *** >NZ_BITO01000087.1 Clostridioides difficile strain FD194 sequence087, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 3033 29 100.0 36 ............................. TTGCCTAAAAGATTTTTAGCTATCTTATATAATGTA 2968 29 100.0 37 ............................. CATGACCATACTGTATTGTCATTTTTGATTATGAATG 2902 29 100.0 36 ............................. ACGACTGCAAGTTTAGCTATGTCTGTATATAAGACA 2837 29 100.0 37 ............................. CTATTTGCAATAATACTATTATTTTGGATACACAAAC 2771 29 100.0 37 ............................. TTTTCTTTTTCTTAATTTTTTATTATGTAGCTTTAAG 2705 29 89.7 0 .....................C.TA.... | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 98.3 37 GTTTTATATTAACTATATGGAATGTAAAT # Left flank : AGGAATAAATATTTGAAAAAGCTATGAGTGGTGTTTCCATAGAAGTTTCTTCACTTTCTTATGAGAGGAGGTGAAAACTATGGAAAATCTAATGATGAGTATTATAGCTGGTGTTATAGCCAGTTACATTTACGATAAATTAAAGAGCCACTCTGAGCGACCAACTAAGAGTGGCTGGGAACTTAATATAAAGTTCCAGAAAAGTAAATCTTCAAAATAATTGTTGAAGGAAACATCACTCAAAGTTAAGTAAAATATGTTTCCTTGCTTTTATTATATCACAAATTGGTACAGATATTCAAAAATAATATTTTTATGATATAATAAAGTCATAGAAATTTTGCAGTGTTCGATTTTTTGAAGAAATTAAGGCTTAACAGTTGAGATATAAGGCATTGAGGACTTGTGATAAGTGTTATCAATTGCACTACTCATGGTTCACTGCAAATTTGAGAGATTTGTATATGTGTAGGCATTGGAAATATTCAATTTATTTTGGG # Right flank : TAAAAATACTGAAAAACACTTACTTTTGTGGTAGGTGCTTTTTTATATTCAAACCTGTGTACTTAATTGAAATATTTGTTAAAATATGTAAGAATTATATGATATAATAATTGTAGCAAGGAAAATAAAGTTGAAAAGCTGAGGGTGATTTTCTCATATAAACGCCAAATTCCAATATAGGAAGGAGGTGAATTTATATGTTAATTAACTTTTTATTGAGTATAGTAGCTGGAATTGTGTCAGCTTACATTTACGAGAAAATAAAAAATCACCCAAACGCCAATGATTACTACTTTAATAGGTTTTTTTATATTTGCAGTTCAAAGAGGAATATTTTAATTAATTAAGAGGTTAAGATATGGATAATTTAATAAGTTTTATACCAGAGCAACTACTTTTATTAGTAGTTGCTCTTAATGTATTAGGATTTGGATTTAAGAAATACAAACAGTTAGATAATAAATATATCTCAGTTATACTGCTAGCACTTGGTATAGTAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATATGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //