Array 1 4252886-4258482 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP013961.1 Xanthomonas oryzae pv. oryzae strain PXO145 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 4252886 31 100.0 34 ............................... TGGCCCTGTGCAATGACCCATTGCCACTGGCATC 4252951 31 100.0 36 ............................... TGCAAGTCCGAGCCCTGTGGGTTGATCCCTGAGCCC 4253018 31 100.0 34 ............................... GTGCTTATCCTCCGTGGCTCTTCCATAATCACAC 4253083 31 100.0 35 ............................... GTGCAGTCACTTGTTGAGAGTGGCAAGCAGACTGA 4253149 31 100.0 33 ............................... CTAAAAACAAGCTCAGGCTAGAGGGACGGCGGA 4253213 31 100.0 35 ............................... AACTGGGCAAGTCCTAAGCAGAGGTCAGCGCTGTT 4253279 31 100.0 34 ............................... CACCGTAACACACCCGTCAGGGGATCATAAGCCA 4253344 31 100.0 34 ............................... TGGGTGCAGCATTTTTAGGGGATGTTGAGCACAA 4253409 31 100.0 36 ............................... TTGGTTGGCGCCTTTGACCTGGCTGCGCAGATCTTT 4253476 31 100.0 37 ............................... TCTGCTGCTTTCGGCGTGGATTACAACAGCCTCAGCG 4253544 31 100.0 34 ............................... GCGGGCAAGGCGCTGTGGCGGGAATGTCAGAAGG 4253609 31 100.0 34 ............................... ACCTTGCAGCCCTTAGCTTTGCAATACCCCTCAT 4253674 31 100.0 35 ............................... AGCACTGTGCTTGGCGGTATCGGCGGCGGTGCAGG 4253740 31 100.0 34 ............................... GGTGGCAGAGTATATGCAGATATCCCACCCGATT 4253805 31 100.0 36 ............................... TTCGGCGTCCCGCCGAGCATGATTGGGCACAGCAGT 4253872 31 100.0 36 ............................... TGTTGGTGACGCGCCACCTTCCACGCCCGGTGATGG 4253939 31 100.0 34 ............................... GTGCATTACTTCACCAAAGATCGCGCCGACCCCA 4254004 31 100.0 36 ............................... CGGGGTCTTATAGCGATAACTGGACGATCGAGCAGG 4254071 31 100.0 34 ............................... ACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 4254136 31 100.0 34 ............................... TCGCGAATAGGCGCGGTCCAGGGCCACGCAGTGG 4254201 31 100.0 34 ............................... CCAGGTAGGTGCCAGTGGCCACAACTTGGAAGAT 4254266 31 100.0 34 ............................... TGGTTACAGATGATCATGGGCGATCAGGCCGACA 4254331 31 100.0 36 ............................... CGCAAACCAGATGGCAAGTGGCAGCGGGGCAGCAAC 4254398 31 100.0 33 ............................... ACTAGCAGCCAGTTTGGCAGGCTGCTTTGCAGC 4254462 31 100.0 34 ............................... AGGAAACGGTCGCCATTGGGCAAGCTGCGGCGCA 4254527 31 100.0 34 ............................... TTGGGAGCCTATTAATAACATCTAGGACAACCCG 4254592 31 100.0 33 ............................... CGTCAATTGTGGTGACAGTTGTTTGCAGGGCAC 4254656 31 100.0 34 ............................... TTGCAAAAAAGCAGCCAAGCCGCCGGGAGTTTGT 4254721 31 100.0 35 ............................... CCATTTACACCAAGGCCTGCCGGCGAGGTTGCATA 4254787 31 100.0 34 ............................... TGACTATGACTCTGTCGCCCTGGCTGCGCCGTAT 4254852 31 100.0 34 ............................... CGCCGACTCTAGGGCAATGCGCGTTGCTGGAGGG 4254917 31 100.0 35 ............................... AAGCTTGATCTTGTTGGCATAGGACCAGCGCGGAA 4254983 31 100.0 34 ............................... GTCTGGAATACACCACTTACCCGACTCATCCTGC 4255048 31 100.0 35 ............................... CTTAATCCCGGAGATGTATACGCCACTTCGCCGGC 4255114 31 100.0 35 ............................... CACGCCCGGTGATGGTGATGGCCACGGTGATGACC 4255180 31 100.0 36 ............................... GCCTTGCTCATGCCGTTGGCGCTGTAGTCCCCGTAG 4255247 31 100.0 34 ............................... CCAGATGCTTGACATGCATGAGCAGGGTGTGTTA 4255312 31 96.8 35 T.............................. CGGATGTTCGCCGGCGTGCATGTTGTATGGCGCAC 4255378 31 100.0 34 ............................... CTTGAGGACTCGTCGGGCCGCCAGCTGTCTGTCC 4255443 31 96.8 34 ...T........................... TGCTGCATGCTTGCGTGCCAATGTAACCTGCACA 4255508 31 100.0 34 ............................... ACGGTGGCTGTTAGCTCCAGTACTGTGCTTGCAG 4255573 31 100.0 33 ............................... TGGCTGATCAGGCTGCTGGAGTAGATCCAGCTG 4255637 31 100.0 34 ............................... ATATAGATACTGCCTGCACCTAGGCTACCCACTA 4255702 31 100.0 34 ............................... TGCATCGCCTCGGCGAGCGCGATGATGAGCGCGC 4255767 31 100.0 35 ............................... CCATTTACAGACAGACCTGAGGGCGAAGTGGCGTA 4255833 31 100.0 33 ............................... CCAAATCGGAGGTCTGCACTGGCATATGCTGAC 4255897 31 100.0 33 ............................... GTTAAGGAAGCTCATGCAGTTGCCCAGGCTCGT 4255961 31 100.0 36 ............................... GTCCTGGGACGCCTCGCCGGCAGCGTCGCAGGCATG 4256028 31 100.0 34 ............................... ACCTTCCCCGCGATGCGGCCGATGCGCTGCAGGC 4256093 31 100.0 34 ............................... TATTTCGCACGAGATGCGTGCAGCACCTGCGATC 4256158 31 100.0 35 ............................... AGCTGCGTTGGTCCGACCACTCTGGTGCGAGGTTA 4256224 31 100.0 35 ............................... TCGGCGACGTGGAGCACAAGACCAGCAAGAGTGGC 4256290 31 100.0 33 ............................... CCATGCGGCGAGGTTTCCACGCTGACACTCCCG 4256354 31 100.0 34 ............................... AGCACTGTGTTAGGTGGTATTGGTGGCTCGGGAT 4256419 31 100.0 34 ............................... TTAGCCACGATGGCATAAATGTCACTTGGCAGAT 4256484 31 100.0 35 ............................... TGAGACTTGTCTCTGAGGCACCAGATATGCAGGTG 4256550 31 100.0 34 ............................... ACATCGTTCGACAGGGTGATGGCGTTCGGTTGCA 4256615 31 100.0 35 ............................... CGCGCCAAGGGGGCACCTGCCCGCTCCAACTCCTC 4256681 31 100.0 35 ............................... TTCGTGCAGCTGGTTGGGTGATCTTCGCCATTGCC 4256747 31 100.0 35 ............................... TCACGAATAGGCGCGGTCCAGGGCCACGCAGTGGC 4256813 31 100.0 34 ............................... GCCAACGCGAAACCTCTGAAACGTTGCATTGCTG 4256878 31 100.0 34 ............................... TCAGCGCGTGTGGAGCGTTATCCGTAGGGGCGCT 4256943 31 100.0 36 ............................... CCGACGTTGGCCAGCCTCTACGAAGGCGCTGTAGCC 4257010 31 100.0 34 ............................... AGGTGTTGCGCGCTGTCAAAGCGTCTGCACGCGT 4257075 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 4257142 31 100.0 35 ............................... AAGATTGGACCCTCGCTGGTGATGATCGGCGCGGC 4257208 31 100.0 36 ............................... GTGATGGTGCTGGAACAGGCGTTGTCGGCTGTGCTG 4257275 31 100.0 35 ............................... TAGATCGCCCACAAAGGACCGTGGATATGTGGACA 4257341 31 100.0 34 ............................... TTTCGCGGCGTGATCACCTGGTCGGCGATTAACG 4257406 31 100.0 33 ............................... TATACGGAGCGTGGAGGGTGATCTTAAGGTTGC 4257470 31 100.0 34 ............................... ACCATCTGCGTTTCTGCATCGCTGAAAAGGCCGC 4257535 31 100.0 34 ............................... ATCGTGCGGCATTGCCCAACGCCTGATGCGTTGC 4257600 31 100.0 35 ............................... TGGATGCTGACGTTCGTGACTTGCGCGCCGCTGTC 4257666 31 100.0 35 ............................... GGGCGCGGGGCGAGCGGGACGACCTGGATGCTCAT 4257732 31 100.0 34 ............................... GTTCTATACGCGGAACGGCGCGGGCACGCTGCTG 4257797 31 100.0 34 ............................... GTGGCCCACGTCGAGTCGCAGGCGAAACGACCGC 4257862 31 100.0 35 ............................... ACGTTCAAGCCGCTCGCCCTGGGCGACCGGTGGGA 4257928 31 100.0 35 ............................... CCGACCTCAAGGCGCGTTCCTCCGGTTCGATCCAA 4257994 31 100.0 33 ............................... ATGGGTAGTAACGTATCCACGGCCCGTGAAGCG 4258058 31 100.0 36 ............................... ACGTAGAACGAGCGCTTGTTATAGCGCTCGCGCCAC 4258125 31 100.0 34 ............................... CTGCACATACTCAATCAGGGCGCTGTCGGTGCGA 4258190 31 100.0 34 ............................... ACCGCATCCCGGAAGACCCACAATGTTGTCCGCC 4258255 31 100.0 36 ............................... GCCCGACGGGTATGAGCAAGTCTTTGCTGGGATACC 4258322 31 100.0 34 ............................... CGCGACGGGCTGGAGCTGGTAACCCCGTCGCAGA 4258387 31 100.0 34 ............................... GAGTGCCCGGGGTCGGTGTCGGCGCAGGCTGGCC 4258452 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 86 31 99.9 34 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACGCCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATAACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGC # Right flank : CATGACGCGTCAGCATTACTCATAAGTCAGAAATATAGGCGACACTTGGATGCGTGAAGAACGAGCGCACCAATTCTGGTCGAGCTGCAATGTCGGACAACTGATCATGCACCCGATCGGCCAGCTTCTCGCCACTGCGCAGCGGGCTGCGCGCTACGCCCGTGCGCTTGGTGTAGCTCCACACCAACTCGTCGGGATTCAAGTCCGGCGCGTCACCCGGCAGGAAATGCAGCGTCAGCCTGCCCTTCAGGCTGTCCACGTCATCGCGCAAGCCACGGGTCTTGTGGGCAGGCAAACCATCACCTGATTAGCACGATCTTTCAGCACAGTCGCAGCCAGTGAGAGCCGACCGGTCGATGGTAGGACCGTCGCTCCACCGAGACCAGATCATGGCCATGAATCGTGTGCAGTTCCAAGCCGGGCTGTCGTTGCCGGCGTTCCTCAAGTGGTGCCCAGCTTGCTGGCCGCCGCAGCCGCCAGCAAGCCGTGGTCCGAGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //