Array 1 82109-77221 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQXF01000004.1 Acinetobacter pittii strain MCR53 284, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 82108 28 100.0 32 ............................ AGTTCCCAAGTAACGTGGACCTGACCTACTCA 82048 28 100.0 32 ............................ TGCAATTAGCAACAGATAAATAGGCGATAATA 81988 28 100.0 32 ............................ GAAAATCATGCATGCTATTTTCTCACCAATTG 81928 28 100.0 32 ............................ ATACGACGTGTAATTTCATTTGAGTTTCATCA 81868 28 100.0 32 ............................ GCCACAGCCGTGCAATGTGCCGATCTGAAAGC 81808 28 100.0 32 ............................ ACAACCAATGCAATCACTGTGTCATGGATTCC 81748 28 100.0 32 ............................ ATTTTCAATATCGCCAAACAGCTTTTGAGGCT 81688 28 100.0 32 ............................ TAACGGCCAAAAAGTCAAAATGTCAGATCCAC 81628 28 100.0 32 ............................ TTAAACGATGGAAATAGGGAAAGTTTTTGCGT 81568 28 100.0 32 ............................ TACAGGTTAAACCCTTCAAGAGTCAAAAATAA 81508 28 100.0 32 ............................ ACCAGCATCTTCACCACCTCCAGCGATTCCTC 81448 28 100.0 32 ............................ CTGCGCACAGCTTCGGGGACTCGCAATTCCCC 81388 28 100.0 32 ............................ AATGACGGCTGTACACGTTTAGCTGACGGTTC 81328 28 100.0 32 ............................ ATTTACGACAGTTTCACCTTCAGGACATGCAG 81268 28 100.0 32 ............................ TTCACCAGTACCAGTACCACCGCCATCAGATC 81208 28 100.0 32 ............................ ACGGGTGGCACTGAGGGTGGTACTGGCGGTGG 81148 28 100.0 32 ............................ TGTAGGTGGTGGCGGTTCTGCAACTGACGTTA 81088 28 100.0 32 ............................ AGAAGTGGAGGATTTTTAATGACTTGGATTCT 81028 28 100.0 32 ............................ ATCTACACGAAAACAATGACTGATGACGAGCT 80968 28 100.0 32 ............................ GACCTGCGATTAACGCCCCCAAAAGTCGGCAA 80908 28 100.0 32 ............................ AAACGTATTCAGGGTATTGGGCATCAAAACCC 80848 28 100.0 32 ............................ AGATTGGTACGAAGAGCCAGTTTCGCAGTTTA 80788 28 100.0 32 ............................ TGTTGGTGGTGGTACTTCGTTAGATATGAAGC 80728 28 100.0 32 ............................ TGCAGGACATGCAGCGATAGTAAATTGTTGTC 80668 28 100.0 32 ............................ ACCGACAACTAACGTGCAGGCTCTATCGAAAA 80608 28 100.0 32 ............................ AGATACGGTAACTGAACCAGCCCCCCACATCT 80548 28 100.0 32 ............................ TAAGTATGAAATCTCGATGTCATTTGCTTTTT 80488 28 100.0 32 ............................ TGCAGGTGCACCTTCAGGCGTGACGCAATGGA 80428 28 100.0 32 ............................ TCAACCACTTATGCCGTGGATTAATTAACTTT 80368 28 100.0 32 ............................ TCGTAAGGCTTCAAAAATGCTATGAGTAGCTT 80308 28 100.0 32 ............................ TCGGCCGTCTGCGCGTGTAGGCGTAGCAGTTA 80248 28 100.0 32 ............................ GGAGCCGCTTTTCGAGCTTCTTAACATCTTTG 80188 28 100.0 32 ............................ CGGATGCTGTCCGAATTTGGACCCTCGAGTCT 80128 28 100.0 32 ............................ CGTACTTGCATATACAGACATATTTATAGCTT 80068 28 100.0 32 ............................ TTAAAATCATTAACCAGGCTTATGAGAAATAC 80008 28 100.0 32 ............................ TGGTACGTGGTCTTGCCCCGCGGCTAAGCCCC 79948 28 100.0 32 ............................ ATTTAAGTTGAGGGATTCTGACAGACGCACGT 79888 28 100.0 32 ............................ GCGGGTAAAAAGCCTCACGGAATTGTCATTGA 79828 28 100.0 32 ............................ GAAACATTAGCGATGATGCGCCAGGAAGTCGC 79768 28 100.0 32 ............................ ACGAATTGCTCCAGAGTCGGCGCAGGTGGTGG 79708 28 100.0 32 ............................ ATTGCAAAAACCTTGATTACGTATTTAAGAAT 79648 28 100.0 32 ............................ TGCGTCTGAGCCACCGCCTATAGACCCTAACG 79588 28 100.0 32 ............................ CTAATCATTATTAGCCCCTCGATAGTGTCCAG 79528 28 100.0 32 ............................ TTGGTTTCGATAATAAAATCTAAAGATTTCTC 79468 28 100.0 32 ............................ TACCATGTCTTGCGTAATCGTCACCGGGACCC 79408 28 100.0 32 ............................ CGGATAAGGAGCCGCGCCTGTTGATGCGTGGA 79348 28 100.0 32 ............................ GGCCTAAAACTCATGCGCCGCGCTGCTGAGAC 79288 28 100.0 32 ............................ AGGTGCTCCAACATCGTCACATCCGCTGGTTT 79228 28 100.0 32 ............................ ATTCCTTGAAGTTGGTGAAGTGTTGCCTCGTA 79168 28 100.0 32 ............................ TCAAGCAAATTGGGAGTTTCTTGAGCCGATCA 79108 28 100.0 32 ............................ ACTGATTGTTCAGGACCCAGATCATCAGTCGA 79048 28 100.0 32 ............................ TCAGGATCTTCGCCGTCGGCGGCGAACAGACC 78988 28 100.0 32 ............................ GCAAAAAACTAAAGTTCAAGATTCTGATGAAA 78928 28 100.0 32 ............................ ATTAACAAATCCCCATAGAACGAAAATTATCA 78868 28 100.0 32 ............................ ACCATAACTGTTCTTGGCATTAACTTCACCAC 78808 28 100.0 32 ............................ TCAGGGTTGTTCTTGGCTAACTCTTCAATGCT 78748 28 100.0 32 ............................ AGTATATAACATTTTCATACACCCATCTTTCA 78688 28 100.0 32 ............................ AGCTTGATCAGCAGCGGCAAGGCCGAACTTCT 78628 28 100.0 32 ............................ AGTATTGCGGTCGTACTTTGCAATTTGGTCAA 78568 28 100.0 32 ............................ ACAACCCGTAGGCGGCATATCACAATATGTCG 78508 28 100.0 32 ............................ CAAGCGGGATTGCTGCAGTTTTAAAATTTTAT 78448 28 100.0 32 ............................ TATAGATTACCGAGCAACAGACTCTAAAGCCG 78388 28 100.0 32 ............................ AGATTGGCATGTAGCACCCGAAACAAGTGAGT 78328 28 100.0 32 ............................ AGTTTGACTCCTGTGATATTAGTAACCTTAAA 78268 28 100.0 32 ............................ TCATGCAAGAAGCCGATCATTTCCATAGCACC 78208 28 100.0 32 ............................ TAGTAAAATCACCTGAAAGCCAATGCCCTGTC 78148 28 96.4 32 ............C............... TTCATAATCCTTGCGAGCATCATCAAGCTTTT 78088 28 100.0 32 ............................ TTAAAGACACAAAACTTATCACCCACAGCGTA 78028 28 100.0 32 ............................ ATAAGCGCTTGAAGTTGGGTTTTTAGCCGCAT 77968 28 89.3 32 A..CG....................... ACCCTTGCGCTTATCGATCAAACGGCCAATGC 77908 28 100.0 32 ............................ TCAACCTGAATACGGACATATATGTTCTGTTT 77848 28 96.4 32 ...G........................ AAGAAAACCAAGCCCCTGCAAAGCCCCTTTCA 77788 28 85.7 32 ...G......A.CC.............. AAATACATCTCTTTGCTTCAGCTAAAGGGTGG 77728 28 85.7 32 ...G.......TG..............G TGCTAAAGAGAACTGGCAACTCTTGCCCAAGT 77668 28 92.9 32 ...G........G............... AGATTTGCCAGTCGCGCGACTTCGCCTTGAAT 77608 28 89.3 32 ...G.....T..T............... TTAACAGCAATTATTCATTTTGCAATTTTATA 77548 28 92.9 32 ...G........T............... ATAGTGAAATCTAAAACTAATTCGCCTTCTCT 77488 28 92.9 32 ...G........G............... ATCAAAATTTTTAAAGCTGTTTTTGGGTTACT 77428 28 96.4 32 ...G........................ TTATTCAAATCTATCATGCTGCCACCTTCGCT 77368 28 89.3 32 ...G........CC.............. TGTATCATTTCACGTTCAGGAATATACTCAAT 77308 28 96.4 32 .................C.......... TGTGAAGTGTATAGACTCCCCTGCTCAATAAA 77248 28 85.7 0 ...CG...................AT.. | ========== ====== ====== ====== ============================ ================================ ================== 82 28 98.6 32 GTTACTCATCGCATAGATGATTTAGAAA # Left flank : ACGTTGGGCTAAAACGTTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAATTTATTCGTGATGAAGGAAAAAACTCTCATGACACTATTGCTGATATAGCCAACAGCTACCTCGATCATGGAAACTATATTGCCTATGGCTATGCGGCAGTTGCTTTAAATGGTATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTCGCTGATCTAGTGAAAGATGCTTTTGTGATGCCACTCGCTTTTACATGTGCAGCAAAAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACGTGCCAAGACCAAGATATTCTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACATTTAATTAAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGATTTTTGTTTTAACTTAACTCTA # Right flank : TTTATAATCTTAAAAAGAAAAAACCCCGAAACTTACGTTTCAGGGCTTTTCACGAATTTTGGTGGAGATGGCGTCAATTGAACTCATAACCTAACCTATTGATTTTAAATATCAATTTATATAATAGATAAATTTTGTACCCAATTTTTACCCAAATTAGATTTAGTGCATTGAATACTAAAACTAATTTTGTTCAAAGTCATCTTTAGGATTTGAAGTTAGATCTTAGTTTAACACGTGTAAATTTAATATTAAAAGCAATGATATAACATTTCTTTTTTACATTTTTTCATGTATCATTCAATAATATAACTGCCGGGATAAGGTTATGTTTGAAAATATTGATGCTTAAAAAAAATTAGATCAGCACCGTCCTCTTTCCCCTGCAATTGTAAAGAATTTACAAGAAGATCTTATTGTTCGTTGGACATATCACTTAAATGCAATCGAAGGAATACACTTACATTGCTAGAGACCAAAGTCGTTTTGGAAGGCATAAC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [31-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [70.0-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 87200-89326 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQXF01000004.1 Acinetobacter pittii strain MCR53 284, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 87200 28 100.0 31 ............................ TTCAATCGGGGTGTTCTAACAATGCGACATA C [87225] 87260 28 96.4 32 .........................C.. GTACAGAATTGTGAAAACACCAAACAATGCGA 87320 28 100.0 31 ............................ AAACAACACCAGCTACAAAAACATGAAAAAG C [87343] 87380 28 96.4 32 .........................C.. GTTCATGCCCCTTAGTCTTTTGAGGGTTATAG 87440 28 96.4 32 .........................C.. GATTCAATCGGGGTGTTCTAACAATGCGACAT 87500 28 100.0 31 ............................ AAGTAGCGGAGTACTACGACATGTTGAAAGC C [87524] 87560 28 96.4 32 .........................C.. TGTAGAAATTAGATATTTATCTTTACTAATAT 87620 28 96.4 32 .........................C.. GTGACCTGCATCATGCCATCGCCGTGCGCTAT 87680 28 100.0 31 ............................ ATGGTGCTTTTTTGATCAAAATTACAAGTGA C [87704] 87740 28 100.0 31 ............................ TGATCGAAAAACTCACGGCGAGCATCACGTT C [87763] 87800 28 100.0 31 ............................ TTCGCAAAACGCAGGTATCTTTACTTCAGAT C [87824] 87860 28 100.0 31 ............................ CAAACGAAGAAGAAACCACCGAGTGCCATCA C [87884] 87920 28 96.4 32 .........................C.. GATATTTCAGACATTTTTACTACCCTCGTTTA 87980 28 96.4 32 .........................C.. TAAATGAGATTCAGTCCAAACCTCATCAGGGC 88040 28 89.3 32 ...........CAT.............. TGTGGGGCAATGTAGAGAATTGAGAGAATAGG 88100 28 89.3 32 ...........CAT.............. AATAACTTTCGCTGCGTTTATGCGAATCTGCT 88160 28 92.9 32 ...........C.............C.. CATTGTGGTAAAACAATCCAGTTCGTCGCCCA 88220 28 89.3 32 ...........CAT.............. TTGTAAAGTGTGTGTGGTCGTTGGATAAGCAA 88280 28 85.7 32 ...A.......CAT.............. AATCGGTTTACTAAGTTCACGGGTCAGGTAGT 88340 28 92.9 32 .........T.C................ GATAAAGATGAGCCAACGGATAATCCGGCACT 88400 28 89.3 32 ...........CAT.............. TATGTTGCACAAAGAGCTCAACGTTTTTCTGG 88460 28 89.3 33 ...........CAT.............. CAAATTCACCCTGCATATTCACTAGCGTCAATT 88521 28 85.7 31 ...AC......CT............... ATTACTTTTCTCCAAGCATAAAAAAGCCCTG 88580 28 82.1 32 T..A.......CAT.............. AGCTGCGCATCTGCAAGAGTTCCGCAGGCGTG 88640 28 85.7 32 ...A.......CAT.............. AAAACCTCGGCAAGATACAAGTCGCGTCATTG 88700 28 85.7 32 ...TC.......AT.............. ATTGATAGCCAAATAGCGCCACAACGCTTAAT 88760 28 89.3 32 ...A........AT.............. AACTTATCAGCCACAATAAAAGACTACGTGAT 88820 28 82.1 32 ...CG......C.T.....G........ ATCTTAATATTTAGAGCCTTGGATTCGTTGCT 88880 28 85.7 32 ...AC......CA............... TGCAATGGCTGCATATAAACCATGTCCACGGG 88940 28 75.0 32 A..A.....T.CAT.....G........ ATGTGATAGGGGTTCGCCATCATTAAGTCATA 89000 28 78.6 32 ...CA......CTG......A....... TTATAGCAATACCCATTGCAGATGCGTCTGCA 89060 28 92.9 32 ....C......C................ TTATCGGCATTCGCCCCGTACTTATAACGCCG 89120 28 85.7 32 ...A.......CAT.............. GATTTAATGGGTTCATTGCTTGGTGAACAATC 89180 28 85.7 33 ....C......CT..............G CTTCGGGATAGCTTGACGAGGCAAAGTCTAACA 89241 27 78.6 32 T...-..T...CAT.............. AAACAAAAAACCTGCGTTCTTCCATTTGCTCC 89300 27 85.7 0 ....C......CT...........-... | ========== ====== ====== ====== ============================ ================================= ================== 36 28 90.9 32 GTTGTTCATCGTCCAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTAAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATCCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGTCAATTTTTAACACATTATTTGAAAAATGAAAGTGTTGAAGCAGAGATATGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTTATAAATTTAGCCTAAGACGATTAGGTTAAATTTTAAAAAATTAGAAAAATTAATATAATTCAATAAATTATATTTATTCTTCTATTTTGAAGGTTTTTGATTCATTAAAACTTTATACTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTCCTTCCAAAATTTAAGACGACATATTTTGTCGTTAAAAGGTCGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCGATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCCCCAATGACAATGGAAGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCCACTCGACAAACTGCGGTAGCTGCTTACATTAATTTTGGTGTACGAAGAATGAAGCTTGCATGGGTTGTAGGAGCAAAACATAAATTTGCCCATGACGGTGCATATCCAGTTGCATCGACCAAAAAACAACAAAAACTACTGATGCTAGATGAATGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGTGACATGCATGATATTGGTAAAGC # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.25, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGTCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.29%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [8-58] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //