Array 1 364655-364261 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950181.1 Thermobifida cellulosilytica TB100 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 364654 30 96.7 31 .............................T CCTCGGAGGGGCGCGGCCGCTACGCCCTGGG 364593 30 96.7 31 .............................C CGCTTCACCGGTGAACCCTCCAGTCGAGTCC 364532 30 100.0 30 .............................. AAACGGCCGGGCAATGGGCGCCCGGCCGAG 364472 30 100.0 30 .............................. AAACGGCCGGGCAATGGGCGCCCGGCCGAG 364412 30 96.7 31 .............................G TCGTTACCTATCTAGACCGGCGCCAACCGGT 364351 30 96.7 31 .............................G TCGTCCCAGCGGATGCCCTTCGCGCCGCCGC 364290 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 7 30 98.1 31 GTGCTCCCCACGCACGTGGGGATGGTCCGA # Left flank : GCTGGGTGCGCTGGCCCGCCTCCGCTCGGATTTCCCGCTGTGGGAGATCACCTACGACCCCAACCGCGAAACCTGGCGGCGGTGGCGCGCCTGGCGGCACGCTCCGCTCACCGAGGTCGAGGCCCAGCAGTATCGGCGGCGGGAGATCGTCGCGCCGACCATGGACCGGCTGCTCGCCGACCTGGGGGCGGAGCAGCGCGCCCAGGACGTGTTGCGGGCGGTTTCGCGGCGGTCATAGGGTTCCGCGCACTGTCCCTTCCCCATGCGGGTGCGTGGAGGTTCCGGGGCGTCTGAGGGGAGCCGCGGAACCGAGGCCCCCGCCACCAGCGTGGCGGGGGTTTTCTCGTCTCGACACCCCTCACTGTGGGTTACATGCTGGTAGCTGAAGGAGGAGGCTTATGGCCTGGGGCAGAAAAGACAACAACGACAGTGACGAGCAGCAGGACTGCGGGGCCTGCGGCGGACAAGGCGGCAAATGGGAGACCCATGACGGGCAGACG # Right flank : CACTGCGGAGTCGCATCGGCCGTCTCCTCTCCCTGCTCCCCAACATGTAGGGGTAATTCCGTGTCGTGGTGACGGTTTTCGTCTGCTTCGCTGCCCTCATCAGCCCAGGCTGGAACCCCGACGGCCGATACCGTTCACTATCCCCGGTGGTCGTGGGTCGGTTCCGGGTTCTGGCGGATGTCTGGGCAGCAGGCAAGGCATCAATAGCCAGGCCGAGGTGTGGGCTGCGGTGCGTCTTCCGGCGGCTGGAAACGCGTCCACGGGTTTTCGTGAGTGGAAGGGAACTCCCCGGCGCTGATGGTTCCGGGTCGTTTCGGCTGTCCCTCGCGCGAGGGCTGCTCTCCCGCAGTGTCTCCGGCGGGATTCCTGCCCTTGCTCCTCCCCCACCCGCACGAACCGGATTCGTGCCGGTTTCCGTCCTCTTTCATGCGTGCGTTCCTGTGCGGTGCGCCGACCGGTGTGCGGCGGCCCTCCGCCGGGGTGCGGGGCTGTTGCGGGCC # Questionable array : NO Score: 6.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 370190-367480 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950181.1 Thermobifida cellulosilytica TB100 scaffold2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 370189 29 100.0 32 ............................. CTCCACATCATCGACGGGCAACCCGGTGCCGG 370128 29 100.0 32 ............................. GACGTCGAGGTGCTGCTCCCCAGGACCGGGGT 370067 29 100.0 32 ............................. TCGAGTCCCTGCCGTACTGCCACCGTCCCAAC 370006 29 100.0 31 ............................. AATCCAGTCCCAGTACCACCGAGTCGACTAA 369946 29 100.0 32 ............................. CGCGGGTCGCGCGCCCGCCAGGCGATTCCGGA 369885 29 100.0 32 ............................. CGCCAACGCCGCCGAGCGGGTACGCCGTTCCT 369824 29 100.0 32 ............................. GCATCAGTCGAGTTCGCGCCGATCGACACCGA 369763 29 100.0 32 ............................. CCGCACCTCGGACACATCGACCTCGACCGGCT 369702 29 100.0 32 ............................. GTCTGGTGAGGTGCCCGTGGCCTTGACGAAGG 369641 29 100.0 32 ............................. CCGGGACTGGCTGGTTGTCGAAATCGGCGCAT 369580 29 100.0 32 ............................. GCGGGGACAGACGGTTGCGGACGTGCGCCGGG 369519 29 100.0 32 ............................. CGCTGCTGACCCCCGCCGAGGTCGCCGCCCTG 369458 29 100.0 32 ............................. ACGGGGGACGTGCCCGACGGCGCGGTGTGGGT 369397 29 100.0 32 ............................. CCGCGCTGCTCGGCACCGACGACTCCGATGAA 369336 29 100.0 32 ............................. AGGTAGCACGCCACGGCCATCCCGGCCGCGGC 369275 29 100.0 32 ............................. GAGGACGCCGCGCCGCCGCCCGGCCGTCCCCC 369214 29 100.0 32 ............................. CTGGTCGAATGGCTGGACGGCAACGCCATCGG 369153 29 96.6 32 ............................T GCGATCACCTCCCCGCCACGCGTGCCGAGGCC 369092 29 100.0 32 ............................. TGCCAGTGCGCCCCGTCCCACGTGATCGTGTA 369031 29 100.0 32 ............................. CGCGTCGACGAACTGGGTGCTGAGCGTGCTCG 368970 29 100.0 32 ............................. CAGGTCGGGGACCCGGTCGCGGACCAGCTCGC 368909 29 100.0 32 ............................. AAATGCGCGACGGTCCGGGGCTGGGCTGCCGG 368848 29 100.0 32 ............................. ACTTTCTCGGCTTTGGCGTCGCTCGCGCCGAT 368787 29 100.0 32 ............................. GCGGCGTGCCCGTCGAAGACCGCGGCGAACAA 368726 29 100.0 32 ............................. GGCGGCCGGCGGTCGAGGCGGTCTCCGAGATC 368665 29 100.0 32 ............................. GATCACCCCGCCCGGGGGCACGATTTGCACGA 368604 29 100.0 32 ............................. GCATCACCGATGCTATCCCGGGAGCCGCTGTT 368543 29 96.6 32 ............................T TCCCTGGTCAGACCTGTCCCGGACAGGTCCAG 368482 29 100.0 32 ............................. CTGAGGTCTTTCTGCTGCATCAGCAGGTAGCC 368421 29 100.0 32 ............................. ACCTGCCGCGGCAACTCGTTCGAGAACCGCCG 368360 29 100.0 32 ............................. ATTAGGGATCCGTTCAATGCGCGATTCCCGCT 368299 29 100.0 32 ............................. AGCGCGACCGGCCCCGCGGTCGGCGGGCTCGG 368238 29 100.0 32 ............................. AGCTTGCGCGTGTACACCGAGCGGCTGGTCAC 368177 29 100.0 32 ............................. CGTTTCCTGAACCCCTGGGCGAACGCGCCCCC 368116 29 100.0 32 ............................. TAGTGGTCCCGGTCGCCCCCAGCGCGCGAGAT 368055 29 100.0 32 ............................. CGCGGATGCTGCGTCAGCAGATCCTCACCCGG 367994 29 100.0 32 ............................. TAGGTGCCGAGTCCGGGGCCGTGGCGCTTCGC 367933 29 100.0 32 ............................. TTCGCGCGCGCGTCCGTGTCCAGGTTGGACCA 367872 29 96.6 32 ............................A CCGTGCGGAGCGCTCGGAACGCGGCAAAAACG 367811 29 100.0 32 ............................. CGGCTTTTCACGGATAAGGACATTGCGACGCT 367750 29 100.0 32 ............................. CTGTTCCCCTGGCTCGCGTTCCTGCTCGGCGC 367689 29 100.0 30 ............................. CCCCCCTTGACCAGGGCAGGGGGGCGGGAT 367630 29 100.0 32 ............................. CACCACCACGATGGCACACCAGCAGCGCCAGG 367569 29 100.0 32 ............................. TCGCTTCCCGCGACCGCCAGTACCTACCGGCC 367508 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 45 29 99.8 32 CCAAGACCCACGCACGTGGGGATGAACCG # Left flank : GTTCGCCGCTGAGTTCCTCTCCGGGATAGTCGGACAGGTCCATATCGAGCTGCTGCTGGAACTCGCGGGTCAGTTTCCCGATGTCGTGCAGCCCTGCCCAGAAAGCGATACAGCGTCCCGCATGCTCTTCGTCCGTCTCCATGGCCATGGCGATCGTCTCCCGCAGCCCGGGAGAGAGGTATTCGTGCCACAGGACGAGTGCTGCGGCAGCAGCATCAAGGGAATGGCAGGCGAGCGGGTACACCTTCCCTCGGAGCCCGCGTTCCTTTGCCCAGAACCGCAGATCAACCAACGGGGTGTCGTACTTCTCGCCCGTGCGGCCGTGCTCGGACACATTCCCTCCCGCCCCTCTGTTGTCCTGGCGTATGCGCAGAACGTAGTGGACGAACCGCCACAGGCGGGGTGTTTTCGAGAAACTGGTTTAGAGTGGGGCTGGGACAGTCTGCCTGCAAGTTAGATAACGCGAAGATAACGCGCCGCAAAGTCGCAGGTCAGCTTCT # Right flank : GCCCTCATCGACCGCGGCCTGCTGGCGACCGCTTCCCGCGTCGGCCGTAACGGGGTCCGCAAGACCAACATCACCCGGGTCAACCTCTCCAGTCTCGAAGCGCTGCGCCGCGCCGAGAAGTCCTACAGCGACGACGTGATCGCTGAACTGGACTTCAAGACCGACCCGCCGGAAACCCGGTCTGACAAGCCAAAGTGCACCACGTGCACCAGGGGTGACCAGCCAAGGTGCACCACGTGCACCTACCAGGTGAACCAGGTGCCCCCTATCCATTAGAAGAACCATCAGAGTCATCCTCTTCTCCGCGCGCAGGCGTGAAGCCTGCGACGCCCCGTCCTCGACCGTCCTCGGAGAAGGAAGAAGAGGAGGAGGAAGAGAAGAAGACGACCAACAAGAAGAAGCGGGGTGACTCAGAGACACCCCGCACCAAGACACCCGAGGACCGCGCCATCCGCGTCGTCCTCGACCGCCTCGCCGACCACTCCCCCACCGAGGACGAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAAGACCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.80,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 382927-383321 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950181.1 Thermobifida cellulosilytica TB100 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 382927 29 100.0 32 ............................. CCCCACCTGACCCACAAAACCGAGTAGAACAG 382988 29 100.0 32 ............................. CGCGGGTCGCGCGCCCGCCAGGCGATTCCGGA 383049 29 100.0 32 ............................. CCACTGCCTGGTCGTCGCGGTCCACCGCCTCG 383110 29 100.0 32 ............................. GCACTCGCCGCCGCGCTCGGCGTTCCGCAGTC 383171 29 100.0 32 ............................. GAGCCCTCCGTGACGAACCCCGCCCCGTACTG 383232 29 100.0 32 ............................. AAGGTTCCCCCCCTGAACTGGGGGAAGCAGCC 383293 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 100.0 32 GTGAGCCCCACGCACGTGGGGATGAACCG # Left flank : GTTCACGCTGAAGAAGAACCGCAGAGGTCAGGAGGTCCTTGGAAGGTCGTCGACCTATGGGATCCGCTGGCAGGAGCCGTCGCCGGAGGGGTGAACTACGCGGAACACACTGTCGATGACGGGGAGCCCTGATGACCCGGCTCGTGATGATCGCAACGACGGCCGTTCCCGACCACGTACGGGGCGCACTGTCGCGGTGGATGCTCGAACCGGTTGCTGGCGTGTACGTGGGCACGATGAGTGCCCGAGTCAGGGACGAATTGTGGTCTGCGGTGAGTGCCTCGGTAGGGGAGGGAGCCGCCGTGTGCGTCCACCCCGACGACAACGAGCAGGGATTCACCGTACACACGGCGGGAGAACGTCGCCGCACAGTCGTCGATTTCGACGGGCTCCAACTGATTCAGATGTCAGCACTGGAACAAGTCGAACAAGGGATGCCTCCCATTCCGGAAGGATGGTAACGCCAAGATAACGCCCTGCAAATTGGCAGGTCGTCAACT # Right flank : GATTCAGACACGGCAGACGAATTCATGCCGCACACAAAAAAGACACCTGGCCTGCGATAAGCACAAAATGCCACGTCTCTCGGGGGCGGCCGTAGGATTTTGGCCGCCCCACACCCCTGGCATAGAGGAGAGTGACAGGTGGCCGTCAGTCCCGCTCTGCGCCGCCGCCGAATAGCCCGGACTCTCCTGCACCTCCGTGAATCCCGGGGACTCACCGCCCGCCAGGCCGCCGCTGAGGCGAAGAGACGCGCACCCGCCCTGTCCTGGTCGGAGTCGAAGGTCACCCGGCTGGAGACCTGCCGGGTTCGGCGTCCCCGCGCCGTGGACGTGGCCGCCCTCCTCGACGTGTACGACGTCACCGACCCCGCCACGCGCGCCGCCTACCTGCGTTACGCCCGCGAAGCCGCGCAGACCGGGTGGTGGGACGGCTACCGTGACGTGCTCGGCGATGCGGCTCTTCACGCTGATCTGGAGACCGGGGCGTCCCGTATCCGCGTGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGATCCCCACGCGCGTGGGGGTGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 392975-393612 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950181.1 Thermobifida cellulosilytica TB100 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 392975 29 96.6 32 ............................T CGGAGGGCGAGGAGGAGGTCGACGCGACGGAT 393036 29 100.0 32 ............................. TCAGCGTTCTTCTCGCTGACCTCGCTCACGGC 393097 29 100.0 32 ............................. GCCGGGCACGGTCCGCTGAGCTGGACGGAGTA 393158 29 100.0 32 ............................. CGGACCTGGAACGCGACGTTCCGCCGGTGTGG 393219 29 100.0 32 ............................. GAGACAACCATGACCGTCACGAACCCCCACCT 393280 29 100.0 32 ............................. GGGGTGGCTGCCCCGGCACTCCTCGCACTCCA 393341 29 96.6 32 .....T....................... ACACAGGACCTGGAGGAACCTACTCTCGCCTT 393402 29 93.1 32 ........................GT... ACCTCGCCTCAGCCCTGGCCGCGGAGGCCAGG 393463 29 82.8 32 ...CT.....T.............GT... GAGATGTACCTGAGCCTCGAGCGGCCCGGGTG 393524 29 86.2 32 ...CT...................GT... GAGGGCCGCCGGTGACCCAGCACGACGAAAAC 393585 28 86.2 0 ...CT................-.....T. | ========== ====== ====== ====== ============================= ================================ ================== 11 29 94.7 32 GTGAGCCCCACGCACGTGGGGATGAACCG # Left flank : TCGGCCTGTTCCCGCACGATCCGCGTGGCCTCCTCCGCCGACAGCGTCTCGTCACGCGCCAGCTCCAGCGCCACCCGCACCCGCTCAACCGGGTGCAGCCACCGCACCAAGGCGAGCCTGCGGTTCGTCCACGTGCCCGCCGCCTCCCGAAGCTCCCGCTCACGGTTGGCCCGCTTGGCGGACATCCGCAGCTCATAGGAGCAGCCGGCCAGCAGAGTGATCGAGGCGTACACCACCCGTCCCGCCCACGTGTCGGAATGGGTGGCGTTCAGCGCCGCGGCCAGGCCGATCACCGCCCAGTACCCCGCGCGCAGCCCCATAGCGGGGATGCCCTGCTCGGCACGCTGGTTGATCAGCGTCATGATCACCAGCGCGAACCCCTCGAACACCGCGAACAGCAGCCAGTTCGCAGGAACCGGCACGTCCGCGTGGACACGGGCCACCGTGGCCATGCCGTAGGCGGAGAAGCTCATCGCGATCACGAACTGGATGGCGATGAG # Right flank : GTTCCTGGTGATTTTCGGGAGACAGCAGTTCGCCGCTTCTTGCGTGCGACGGGAGGCAACAAGAACCGGACGACTTTAAATTGTGAGAAGTCGGGGCTTGTGTGTCTGTGAGGAAAAACTGTCTCGGGGCAACAGAACCGTCCATCGGTGGGTAGGGAACTGTGCGCCGAACCGCTTCTGCAGAAGGAGTTTCCTTGCCTGCCTCAGTGCCGAGAATTGCGCTGGACGCCGACGGCGGTGTCACCGAGAGCGACATCCACACCCTGGCTGCTCTGGGCCCCGTGGTCCGGCTCGACGTGATGGGGCTGGACGTGTGGGCCGTGACCGGATACGAGGAACTGCGGTCGCTCATGGCCGACCCCACGGTCAAACGCGGTGTCGAGCACTGGACCGCCGCGGCCCGGGGGGAGGTCCCCGCCGAGCACCCGTTGGTGAAGCTGGTCTCCATGGGGTCGATGCTCAGCAAGAACCCGCCCGAGCACACCCGGTTGCGCCGCCTC # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCACGCACGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGATCCCCACGCGCGTGGGGGTGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 487532-488015 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950181.1 Thermobifida cellulosilytica TB100 scaffold2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 487532 30 100.0 36 .............................. GGTCGGGGAGGCCGGTGACCTGCCCGTATTGTTCTT 487598 30 100.0 36 .............................. AGGCGGGAGAGGGTCCACAGGAGCGGGGGCAGTCCC 487664 30 100.0 35 .............................. CTGGTGGGCATGCGCACCCTGGTGTACTCCGTCCA 487729 30 100.0 34 .............................. ACCAGGGTGGCGACGTTGCGGGCGACGAGTTCGT 487793 30 100.0 37 .............................. CGGAGCAGTGAGACGATGTCCGGGCGCGCGTCGGGGC 487860 30 90.0 34 ...............GT...A......... TCGTGGGCGGCGCCGATGACGGCGGCGATCTCAT 487924 28 83.3 34 .........A..T..--.T........... ACGTAGGCGATGCGAACGGTCTGGGGGCATCGCT 487986 29 80.0 0 ......GA..-A.....G..A......... | C [487988] ========== ====== ====== ====== ============================== ===================================== ================== 8 30 94.2 35 GTCCTCATCGCCCCTACAAGGGGCAGCAAC # Left flank : GTGCGTCGGGCCGAGGGAAACACCGGGGCGCTGTGGCCGAAGGGGACCATTCCGTGCGGCGGCATTCCCGTCGCGTGCAGGCGCGCGCCGACCTCGGGGGCGCCGTGGGCCAGGAGTTCGTAGACCAGGCTGCGTCCCGGTTTGAGGACCTGCGCCCACGGCAGTGACGGAGCCGTTGTGCGTATCCCCAGTCGCAACCGCAATTCCCCACCCCGCTTTCTGGGAGATTCGCCCGTTGCAGCCGCTTGCGCCCAACATAGAACCGGCCTGTGACGTTTCGCAGGGAAAGCGGACAACTCGTCCGCGGTTTTTCGTCGGCCGGGTGTGGTCGTACGGTGGAGGGGAGTGTGGAGCTTCCTTGGGAAGGAGCCTCGTGTTGGGTGGGCCGGGGCCGGGTTTTCAGCGACACGCCGGGGTGTGGTGCACGACCGGAGGTTCGCTGAAAAAAGCCGCTGGAACCGGTTCCCGCCACCGGGCGTGGCCAGGGGTTTTACTCTCGG # Right flank : CTGTGATCCGGGTTGCCGCCCCGCGCTGACGTGCAGGCTTCTTCTCGCCTCTTGTGAGGGGCCGCCCGGCCAGGACAGGACGAAACGCCCTGCCCGCGCGGTCCTGGAACGCCTGGCCGTGTGTGTCGGCTTGTCCAATCGTGTATCAGGGGTGCAGCGGTGAGGATGGGGGCCATGAACGACCGTCCCCGTGCCTCCACCGACCCCGCCCTGCTGGCCGGCCGCGCCTACCGCGACGGGCGCCCGCTGGAGGCCCGCCAGAACCTCTACGCCTACCAGCGCCCCCGCTTCGACCTGCCCGGCCTGGTCCTCCACCACGCCGGCGACCGCGACGGGCTGTGGGTGGACGTGGGATGCGGCAACGGCCGCTACCTGGAACGCATCCGCGCCGCCCGCCCCCGCGCACACGTGGTGGGAATGGACCTGTCCGCCGCCCTGCTGCGCACACTGTCCGGACCGGTGGTCTGCGCCGATGCCGCCCGCCTGCCGCTGCGCACCGG # Questionable array : NO Score: 2.97 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACAAGGGGCAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.00,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 740782-737825 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950180.1 Thermobifida cellulosilytica TB100 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 740781 30 96.7 31 .............................A TCAGCCACCCGGTGATGCCCCCGTCGGGGGC 740720 30 96.7 31 .............................C GGGCGCGCCACCCCACCCGGGGTGGGGTGGC 740659 30 100.0 31 .............................. TCCTACCTACTCGGGTCGAACGGGCATGCGG 740598 30 100.0 31 .............................. GCCGCTTCCGCGGGCCTCGTCCTGTCCGGGT 740537 30 93.3 31 ............................CA TCCCGTAGGTTTCCAACAGCAGTTGGTCGTA 740476 30 96.7 31 .............................A AGACCACCACGACGACGACCGACCCGGCGCG 740415 30 100.0 31 .............................. CTCTGGTGGACGAGCAGGGGAAACGGATCTT 740354 30 96.7 31 .............................C GGCCGGCATGTCGTCGTCCGGGTACAGGCCC 740293 30 96.7 31 .............................A ACGCCGGTGAGATCACCGCCGACGTCAACTA 740232 30 100.0 31 .............................. GCTACGAAGCCGCCCAGCGTGACGCGGAGGC 740171 30 100.0 31 .............................. CTGGCCTCAGGCCTTCGCCGCCCACTGGGTG 740110 30 96.7 31 .............................C GCGAGCACTCCCGCACCGTCAAACCCCGCCG 740049 30 100.0 31 .............................. CGTTCGTGGACCGGGAGGGCCCGGAGGAGGT 739988 30 96.7 31 .............................T CGGTGATGACCCGGCCTCGGCGCACCGTCGA 739927 30 96.7 31 .............................T GGTCGCCGACTTCACCATGCTGGGCGGCCGA 739866 30 96.7 31 .............................C CGCAGTGGGGAATCTCGGCACCACGCTTCTC 739805 30 100.0 31 .............................. AGTTGTCCAAAGTCGTTCACGCGGCCTCCGT 739744 30 96.7 31 .............................C GCCGAAACGATTCGGGAATTTCTCCGGGAAG 739683 30 93.3 31 ............................TT CGACCACCGCGTTATAGGTGGCGTTCCCAAA 739622 30 96.7 31 .............................A TAGCACTGGCCTTGGGGTCCTTTTCGTTTCG 739561 30 96.7 31 .............................A CCCGCACGCGCTCCCGGACGTCGCGGTTTCG 739500 30 96.7 31 .............................C AGTAGCACCGCCTCCGCCTCCATCTGATCAG 739439 30 93.3 31 ............................AC ATCCTCCCCCCTACCCCCTCCGGCACCCGCG 739378 30 96.7 31 .............................A TGGCCGCCGACGCTCCGGTCTCCCAGATCGC 739317 30 100.0 31 .............................. AGGGCACGCTGCTCGGGGAGCCGATCATGTA 739256 30 100.0 31 .............................. TCTATCCGCACCTCGCTAAACGCCGCGAGCT 739195 30 96.7 31 .............................T GTTCGCAGATTTTCAAACTTCTTTCCGTAAC 739134 30 93.3 31 ...............A.............T AGATTCCGCTAGCGCCGCTGCCAATCGCCAG 739073 30 100.0 31 .............................. AACAGTCGAGGACCGCAGGCAGCAGGCCGTT 739012 30 96.7 31 .............................T TCTCGGTGGCAGCGGGTCCAGTCGCCGGGCG 738951 30 96.7 31 .............................C CCGCGCAAGTCAGGAGAGCAGCCATGCAACC 738890 30 96.7 31 .............................A CCCGCGTTCAGGTGGCGCGGGCACTGCTGTT 738829 30 96.7 31 .............................A GGTGGATCATCGGCGGCACCCTCATAGTGCT 738768 30 100.0 31 .............................. CGGTGAAGTTCTGCGGTCGCGGGGTCCTGGA 738707 30 96.7 31 .............................C GGCGCGGGCTGGGCGGGCTGGCGCACAGCAC 738646 30 96.7 31 .............................T AGGCGGGCAGACGCACACTGATGGTGTCGTC 738585 30 100.0 31 .............................. AGTACACGCCGGAGTGGACGGCCACGAACAC 738524 30 96.7 31 .............................T TGGTGAACCGGCAGACGGGCGAGATCAAGGT 738463 30 96.7 31 .............................T GCCTCTGGTGCAGGTGGTACGGATCAGCGGC 738402 30 96.7 31 .............................A ACCCGACGACCTTGTCTTTCATCGTGCCGAT 738341 30 96.7 31 .............................A CGGGGGCGAGAACGTTCTCGACGAGCCAGCT 738280 30 100.0 31 .............................. AGTACACGCCGGAGTGGACGGCCACGAACAC 738219 30 96.7 31 .............................A CTTGTGGCTGCCCGAGGAGGAAGAGCCGCCG 738158 30 100.0 31 .............................. GCTGGCAGATCGCCCAGCTGGCCCTCAACCT 738097 30 96.7 31 .............................C GGTACGGCCGGTCCGCTGCTGCTGCCAGGGC 738036 30 96.7 31 .............................C TGACCCAGGTCGGCGAGTAGCCGGTGACGAG 737975 30 100.0 31 .............................. ATGACGCCGAGCTCGCCGGTGTCGAGCGTCT 737914 29 96.7 31 .....................-........ CCGGGGGCTCGCTGCACCAGCAGCGGATCTG 737854 30 76.7 0 ..............T......G..CCTGT. | ========== ====== ====== ====== ============================== =============================== ================== 49 30 97.0 31 GTGCTCCCCACGCACGTGGGGATGGTCCGG # Left flank : GCTGCCGGGCCTCCCGGCCGAAGACACCGGATGGTTCACCGCCCACCCCACCCCGGCCGCTCCGCGGCTGATGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCAGCCTTGACCACCCCTCGGGTGTGGGAGGGGTTGTCGGGCGACGGGTTTCCGGGTGGTGGAGCGTTGCGGGAAGCCAACAATCCCTCAGATACCGGTGCGGCGGTGAAGGCTGCCGGGCCTCCCGGCCGAAGCAGAGGGGATGGTTGTCCGCTCACACCGGCCCCGGTCGGCCTGGCCGGTGCTTCCGGGATTCGGTCGGCAGACTGGAGCAGCGGTGCGTTTCCGGGAAAGTTGGTCTAGGGTGGCTGCATTGGCTGAGGCCGCCTGCAAGGTTGATCACGGCAAGATAACGCCTTGAGAAATCGCAGGTCAGTTTCT # Right flank : TCGTGGTGATGGTTTCTGTTTGCTTCGGCCGGGAGGCCCGGCAGCCTTGACCGGCGCGCCGGTACCTGAGGGATTGTCGGCTTCCCGCAGTGCTCCACCACCCTGATGACTGCCGTCCGACGATTCTCCCCCTCCCGACGCTCCCTCCCCGACGCTCAGCCATCCGGGAACCCGCCGCCCGACAGTCCCTCTCGCGCCCGAGGAGCGGTCAAGGCTGCCGCGCCTCGCGGCCGAAGCAGAGGGGATGGTTGACCGTTCACCTCGGCCCCAATCCGAGGCGGCTCATGAGTGGAGGCCGCCTGCAAGGGCGGTCACAGGAAGACAACGCCCCAGGAACTGCGGATCAGTCTCTGACCCCACCGGCCCCGGCCTCCCCGGCCTGCCCGCCGCGAGGCGGCGCGGCGTCAGAACGGGGTGCCGTCGTCCTCGGCGGGGGAGTCCTCGGCCAGGGCGGCGGCGAGCTTGGCGCGCGCCCCCTCCAGCCACGCCTCGCAGGTCTT # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.40, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 897519-896770 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950180.1 Thermobifida cellulosilytica TB100 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 897518 30 100.0 34 .............................. TCGGCAGCAGCGTCTACAACGCCGACAACCCCAA 897454 30 100.0 36 .............................. GTCGCCGACACCCACACCACCGGCCCCTCTGGGCCG 897388 30 100.0 36 .............................. TAGGTGCCCTCCCGGTTGCAGTCGACGACGGTCAGG 897322 30 100.0 34 .............................. TACCAGGCGCGCATCGCCGGGTTCTCCCCGCGGG 897258 30 100.0 35 .............................. TCGTTGGTGACGGCGGGGTAGGCGTACATCTGCTC 897193 30 100.0 34 .............................. TGCAGAATGGTCATGCGATACCTCTCCTGTGTTG 897129 30 100.0 38 .............................. GTGGGTGTCCAGGTGGCGACCCGGGCGTCTCGCATCAG 897061 30 100.0 35 .............................. GCGATGTCGAGGCCGGCCCGTTTGTACAGGGCCAT 896996 30 100.0 35 .............................. CTGGTGCTGCGCATGCCCCACCGCCAGTTGGGGAC 896931 30 100.0 36 .............................. CGGACGTGCCCGGCGACGGGGGCGATGCCGATGGGC 896865 30 100.0 36 .............................. GTAGTGACGAGGGCGGTTGTCCGCCGCTCTGAGGAG 896799 30 96.7 0 ........................G..... | ========== ====== ====== ====== ============================== ====================================== ================== 12 30 99.7 35 GTCCTCATCGCCCCTACGAGGGGCAGCAAC # Left flank : GGACTCGAGGTCGCTGCCGACCGTGGTCTCGTGCTCCCCACGCACGTGGGGATGGTCCGGACGACCACGTTTTGGACGCGGCGATGCCGACGTGCTCCCCACGCACGTGGGGATGGTCCGTGCCGCGGTCGACGGCTTGGTTGCGGATGTGGGTGCTCCCCACGCACGTGGGGATGGTCCGTACACGGCCAGCGGCACCGACCAGCATTTGCAGTGCTCCCCACGCACGTGGGGATGGTCCGCGATCACCTCGCGGACGTAGGCGACTTCCTCAACCACGGGTGCAACCATGGGATCGTTTAAACGTTTCGTCCCGGTGGCAGGCTTCGCCGCCATACGGTGGGAATCGACAACTAGCCCTCGGTGGCATCCTGTGAACAGGTCGGACGCCCCCTGGTTTTCAGCGACACGCCGGGGTCTGGTGCACTACCGGAGGTTCGCTGAAAAAGCCGCCGGAACCGGCCCCCGGGGTGGGGCGTGGCCAGCGACTTTACTCTCGG # Right flank : CACGCGGTGCGTACTCCCCGAGGGGCTACCGGGCGACAGGCCGTCCCCGGAAGCCCGGCCCCGGCGCCGGGGCCGGGTGGGCCGACGGCGCCGGGGCCGGGGTCAGCGGGGGTCGATCTGTTCTTCCAGTTCGTCCACGGCGATCAGGTCGCGGCGGATGCGGCCGGTCCGGTAGGAGACGCGGCCGGCGATGTGCGAGGCGACGGGGACGGTGAGGATCTGGAACAGCAGCACCAGCACCAGCATGCCCATGTGCGTGTCGGGGAACAGCCGCAGTCCCAGCCCGGCGAGGATCAGCACCAGGCCCATGATCTGCGGCTTGGCTGCGGTGTGCATCCGCGACAGCAGGTCGGGGAAGCGCACCAGGCCCACCCCGGCCGCGAAGGACAGCAGGGCTCCCAGCAGCAGGAGGACCACCGAGATCCAGTCCAGTACCTGTACGGTCGTCACGGCTCGATCCTCTCCGCCTGCTCGGCCTCCCGGTGCCGTTTGGCGACGAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCATCGCCCCTACGAGGGGCAGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-11.00,-11.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 3 899752-897776 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950180.1 Thermobifida cellulosilytica TB100 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 899751 30 96.7 31 .............................A GCGATCACTTCAACCGCGTCGACCAGTCCGG 899690 30 96.7 31 .............................T GGGTTCGCAACGTCCACCACATTCCGCGTGG 899629 30 96.7 31 .............................T CCGTCCAGTCGGTGATGGAGTCGACGCGGAA 899568 30 100.0 31 .............................. GGCCCCCGTCCACCACTGGACGGGGGCCGCT 899507 30 96.7 31 .............................G GATCGAAGACGGAGTGAGCTGAGCATGACGC 899446 30 93.3 31 ............................AT CGGTCGCGCTGCGCGTGCTCATGGCGGGGGC 899385 30 96.7 32 .............................T ACCGGCAGCAGGTGCGCGCCCAGTACCGCGTC 899323 30 96.7 31 .............................G GACGCAGTCAGGGGGGCGATTCGGACGTCCG 899262 30 96.7 31 .............................A CCTGGAGCCCGGCGGGGCTGACCACCGTAGC 899201 30 96.7 31 .............................T CGCCGTCCACCGCCAACTTCACGGTCGCGGT 899140 30 96.7 31 .............................G ACTCGCTGGGCGGTGCGGCGGGTGCGCCGAT 899079 30 100.0 31 .............................. CCAGGCCCGCGTCGACGAACTCGGCGCCGAG 899018 30 96.7 31 .............................A GTTGGCTGGCGCGATGAGGAGGCCGCTCACG 898957 30 96.7 31 .............................T GAGTACATTCCCGCTCGCCGAGATCGCCGCC 898896 30 96.7 31 .............................G CAGCGGCGACCTCGAATCGGTTCGGCCGGTG 898835 30 96.7 31 .............................A GGTGGGTGGCCGCCGCACCGGTGGCGGCCAC 898774 30 100.0 25 .............................. AGCCCGCCCCCGCCCCGGAGCCCGT 898719 30 100.0 31 .............................. GGGTCGGACAGAGCGGAGCCCCCGTCACCGA 898658 30 96.7 31 .............................G CGGTTGGGGTCATGAATTCCGAATGGTTGCG 898597 30 100.0 30 .............................. CGCGCCCGGCCTGGAACCGGTCTGGTGTCA 898537 30 96.7 31 .............................G TTTTGGATCCGCCGGAAACTCGCCCTCCCTG 898476 30 96.7 31 .............................G CTTATCCCCTTTTCGCAGGTTGCAGGACGGG 898415 30 96.7 31 .............................A GGAACGCGACGTCCTCGGCCAGGCCGAGGGT 898354 30 100.0 31 .............................. CGCCGCCCTCACCGATGAGGAGCGCACAGCC 898293 30 100.0 31 .............................. TCACGCGAGGTGTCGTCGACGTACTTCGCGA 898232 30 100.0 31 .............................. TCACGCGAGGTGTCGTCGACGTACTTCGCGA 898171 30 96.7 31 .............................T CCGGCCCGCCGGCGTCGTTCAACTTGACCGT 898110 30 96.7 31 .............................G GCTGCTCCCACCCGGAATGGGAGCAGCCCCC 898049 30 100.0 31 .............................. CGGACTCGAGGTCGCTGCCGACCGTGGTCTC 897988 30 96.7 31 .............................G ACGACCACGTTTTGGACGCGGCGATGCCGAC 897927 30 96.7 31 .............................T GCCGCGGTCGACGGCTTGGTTGCGGATGTGG 897866 30 96.7 31 .............................T ACACGGCCAGCGGCACCGACCAGCATTTGCA 897805 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 33 30 97.6 31 GTGCTCCCCACGCACGTGGGGATGGTCCGC # Left flank : GGCGGTTTTCCTTCACTCGGGAAAACCTGGGCAAGCACCCCAGCCGTCGGTAACGCCCCCGCAGTCCCACAGGCTGCTCGTGTCCTGCCCGCTGGACCGCGGAACCGGCTGGAAGCCCTCCTGTCGCCGGACGCCACGGACGACCACCGGCACGGCCTTGACGATCATGGCCCCAGGGACAGAACAGATGCTTGTTATGCCCCCAGGGCCATGGAAGACGGTGAAACGGTGCCGCAACCTCGCGGCCCGGCCCAGGCTGGTGGGGGCACTTCACTGTTCCCTCTGCTTCGGCCGCGAGGCGCGGCCGAAACAGACTGGAGGCTTCCTCGCCCACATCAGCCACCCCGGCCGGGGCCTGTCAGCGCATCCAGGACTCAACCGAGCAACCCGAATAACAGTGCTCTTCCGCACAATTGGTCTAAGGTGGCTGCACGGGCGAACCCTGCCCGCAAGGGTGGTCACGTCAAGATAACGCGCCGAGAAGCCGCAGGTCAGTTTCT # Right flank : GATCACCTCGCGGACGTAGGCGACTTCCTCAACCACGGGTGCAACCATGGGATCGTTTAAACGTTTCGTCCCGGTGGCAGGCTTCGCCGCCATACGGTGGGAATCGACAACTAGCCCTCGGTGGCATCCTGTGAACAGGTCGGACGCCCCCTGGTTTTCAGCGACACGCCGGGGTCTGGTGCACTACCGGAGGTTCGCTGAAAAAGCCGCCGGAACCGGCCCCCGGGGTGGGGCGTGGCCAGCGACTTTACTCTCGGGTCCTCATCGCCCCTACGAGGGGCAGCAACTCGGCAGCAGCGTCTACAACGCCGACAACCCCAAGTCCTCATCGCCCCTACGAGGGGCAGCAACGTCGCCGACACCCACACCACCGGCCCCTCTGGGCCGGTCCTCATCGCCCCTACGAGGGGCAGCAACTAGGTGCCCTCCCGGTTGCAGTCGACGACGGTCAGGGTCCTCATCGCCCCTACGAGGGGCAGCAACTACCAGGCGCGCATCGC # Questionable array : NO Score: 5.54 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 1062997-1061626 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950180.1 Thermobifida cellulosilytica TB100 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1062996 29 100.0 32 ............................. GCGCCGTCCCTGACGTACCGACTGGAGAGCGC 1062935 29 96.6 32 ............................A ACCCCCGGCCGAGGTGACCGGGGGTTTCAGGC 1062874 29 100.0 32 ............................. CACGCTCGGTTGGGGAGTGCTGTTGTGGGCAA 1062813 29 100.0 32 ............................. CGCCACGGTCACCCTCCGATCTGCTGGAGTTC 1062752 29 100.0 32 ............................. TCCGGCGCATCGAACCCGCGCCAGACGGCAGC 1062691 29 100.0 32 ............................. TGGGGCACGGGCTGGTCAGCCAGAACGGACTG 1062630 29 100.0 32 ............................. TCCCACTCACTGGGCTCTCCGTCCCGAGGGGT 1062569 29 100.0 32 ............................. GCTTCAGCGAGGGCCTGGTACTCGGAGTACAG 1062508 29 100.0 32 ............................. CCACGCGGCCAGGTCTGCGGCGACCGCGTCCG 1062447 29 100.0 32 ............................. CTGAGCGGCGCCGGACTGGCCTACCTGTCCGG 1062386 29 96.6 32 ............................A ACCGAGTACCTCGACCGCCTCGACCAGCTGCC 1062325 29 100.0 32 ............................. GGCCGCGCAGGGTTCGCTGAGGCGCTGCAGAT 1062264 29 100.0 32 ............................. GATCACCCCGCCCGGGGGCACGATTTGCACGA 1062203 29 100.0 32 ............................. ATGTGGGCCGATCCGGATACGACCCCCGCGTC 1062142 29 96.6 32 ............................T TGCAATCTAGTTCGCAGTTACAAGGGGCGGCC 1062081 29 100.0 32 ............................. GTGACCACCCCCAACTGCCGGGCCCTCAGCAG 1062020 29 100.0 32 ............................. ACGAGGTAGCGGTCCACTAGGCGGGGCTGCTT 1061959 29 100.0 32 ............................. ACCCGAACAATCGGTACGAGGCGCGCCCCTAC 1061898 29 100.0 32 ............................. TGGTTTGAGTCTTCGCGCAAGTAGCGAGGAAT 1061837 29 100.0 32 ............................. ACCGCCTCGGGTTGAACCTGCGCCGCAAAGCC 1061776 29 100.0 32 ............................. TCCAGGATGACAAACGGTCCCATCGCCCCCGC 1061715 29 100.0 32 ............................. CCCACGCCGGTAGTTCTTGAACTACTTCCTGC 1061654 29 93.1 0 ..........................T.T | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.3 32 CTGCTCCCCACGCACGTGGGGATGGTCCG # Left flank : GCATGCGGGGGTGGTTCTGTGTCGCGGTAGCGGTTTCTGTCTGCTTCGGCCGCGAGGCGCGGCAGCCTTGACCACCGCTCGGGCGCGGGAGGGATGGTCGGGTGGCGGGTTCCCAGACGGCGAAGCCCCGGGGACGGTGTCGTCGGACAGGCATCCAGAGGTGCAGCGCCGGGCAAGCGGGCGGGCGGGTTCCCGGGGTCAGCGCCGGGGAAAGAGGGGCGGGTTTCCAGGTGGCGCAGCGCTGCGGGAAGGTGACAGTCCCTCAGGTACCGGCGCGGCGGTCAAGGCTGCCGCGCCTCGCGGCCGAAGCAGAGCGGAGGATCTACCGCTCACATCGCCCCCGGCCGGGGCGTCCTGCCAACGCCTCCAGGACCCGACCGACCAATCGGAACGGCAGTGTGTTTCCGGGAAAGTTGGTCTAGGGTGGCTGCACGGGTGGAGGCCGCCCGCAAGGGTGGTCACGGCAAGATAACGCCCCGAGAAACCGCAGGTCAGTTTCT # Right flank : GTGTCGCAGTAACGGTTTCTGTCTGCTTCGGCCGCGAGGCGCGGCAGCCTCGAGCTCCCCTCGGGTTCGGGGGGGATTGTCGGGTGGCGGGTTTCCAGGTGGCGAAGCGCCTGGGCAGGAGGGGGTTTTCGGGTGGTGCAGCGCTGCGGGAAGCCGACAGTCCCTCAGGTGTCGGCGCGGCGGTCAAGGCTGCCGCGCCTCGCGGCCGAAGCAGAGGGGCAGTTCACCGCTCTCCATGGTCCCGGCCGGGGCAGGGGCTGCCGGTGTCCCGGGGGCCGGGCGGGCAGGGCCACGCGCGTGTCGGCCGCGCGCGGCCGGAAAGCCGACCAGGGGCACCAGGAGGAACAACAAACCCCGGAACAAGGCCGGGACAAGGGCTATAGGGTTCACGATGCGCTCAGCTCCTTGGTAGCTGGGTGCCACGCCCCCGGACGGTGGCTGCCGTCGCGGGGGTCTTCCACGTTCAGACCATAACCCAGGAAAGCTATGGCGTGCTATAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGCACGTGGGGATGGTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGTCCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 1178786-1177657 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950180.1 Thermobifida cellulosilytica TB100 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================== ================== 1178785 30 96.7 31 .............................G ACGTGCTGCGGATCGTCAACGCGATGATCCC 1178724 30 96.7 31 .............................G AGCTGGCGCTCGTGCGGGCCTACTGGCGCGA 1178663 30 93.3 31 ..................A..........T GCCCTCGCCGGGCTGCATCCCGACGAGGGCG 1178602 30 100.0 31 .............................. GGGACGGCGACCGCCACGTGGCCGCTGTGAC 1178541 30 100.0 31 .............................. TCAACGCCGCCCGCTGGCAGGATGCCGCCGA 1178480 30 100.0 31 .............................. GCTTGGCCCGGGCGCTGGTCCGGCTGATCGG 1178419 30 93.3 31 ............................AA CCGCCCCGGCCTGGCGATGCCGACCGGGACT 1178358 30 96.7 31 .............................G CGGGGGTCTACCAGGTCACCAGGTTGGACTC 1178297 30 100.0 31 .............................. CGGTCATCACCCTGGAGGACCGCGACGGCTG 1178236 30 100.0 31 .............................. TTCCCTTATCGAAAACCAGAAACCGGGGCAA 1178175 30 96.7 31 .............................A CCGACGACGCCGCCGTTGCCGCCCTCGGTGC 1178114 30 96.7 31 .............................A TCCAGGGCCGGGACCAATTCGGCGGTGAAGC 1178053 30 96.7 31 .............................A ACCGCCGCGGCCGGTCGGGACGGAGGTCGCG 1177992 30 96.7 30 .............................T CGCGGGCGGCGGCGATGAGGCGGCGCTCCT 1177932 30 100.0 31 .............................. GGGCACCTGCGTTCCCGACCCCTGAACTGGT 1177871 30 100.0 31 .............................. TGGTGCGCCGCGTCCCCAAACCGGAGCGGGA 1177810 30 96.7 31 .............................G TCCTGGACCCGCTGATCGAGACGATGCGCGG 1177749 30 93.3 34 .....................G.......G CCGCGTTGTCGTCAGCGGCGTCGAAGTTTGCCCG 1177685 29 70.0 0 T....T.....A..T.....AG...-.T.T | ========== ====== ====== ====== ============================== ================================== ================== 19 30 96.0 31 GTGCTCCCCACGCACGTGGGGATGGTCCGC # Left flank : GCACGGCGGGCAGATACCGGTGGCTGGGGCCGGTGAACAGGTCGACGTGCTGGTTGGCGTGGCCGGTGAGGTCGGCGAGGTCGCGGACGCGTAGGGCTTCGGCGAGTTGGAGGAGGACGGGGAGTCGGGGTTCTTTGAGTCGGCCGGTTTCGAGGGCTTTGACCCAGGATGCGGATCGGCCGACGAGTCCGCCGAGGACTTCGCGGGTCATCCCGCGGCGGGTGCGTTGGATTTTGAGGCGCTGACCGAACGATAGCGGCTCGGGGTACTCTGCTGGCATAGGCCCTGCCCTTCCTGTGGTTCGCTGCTTTCAGGATAGGCAGGGCCGTCCTCGCGCTCGGGGAAGTCCCTCACTGCACGCGCATGCTGTTGACTACAACCCCCCGTCGTCCTCGCGCTCGGGGAAGTCCCTGGTCCGCAACGGCGAGTTCCCTCTCAAACCGCCCGTCGTCCTCGCGCTCGGGGAAGTCCCAGTTGATGACCTGGGCTTCCCTGCCCCG # Right flank : GTTGCGGTGATGGTCTCCGTCTGCTTCGGCCGTGAGGCGCGGCGGCCTTGACCGTCCCATGGGCGTGGGAGGGGTTGTCGGCCGTGGGTTCCCAGGTGGCGGGGGGTTGGGGAAGGCCGGGGGAGGGCCGTCGGACGGCAGGCACTCTGGCCGGTGAAGCGCTGGGAGAGGTGTGGATGGTTGGGTGTCCAGGAGCGGGTTCCCGGGTGGTGCAGCGCTGCGGGAAGCCGACGGTCCCTCAGGTGCCGGAGCGGTGGTCAAGGCTGCCGGGCCTTGCGGCCGAAGCGGACAGAAACCGTTGCTGCGTCCCAGAACACCCCGCATGCGCGGGGAGCATCCCTGCCGTCAGGAAACGTCTCACAGCCCCACGGTCTCAGCCTGGCTGCTCGGTGTCCTGCCTGCTGTCCAAGGCGCCTCCTGCTGGTCCGTGGAGCCGGCGGAGGCCCTCTTGCCGCCGGATTCTGCGGACGACCGCCGGCACGGGCTTGACGATCATGGCC # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-28.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 1178814-1178959 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950180.1 Thermobifida cellulosilytica TB100 scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ===================================== ================== 1178814 24 100.0 37 ........................ ACGGGCGGTTTGAGAGGGAACTCGCCGTTGCGGACCA 1178875 24 100.0 37 ........................ ACGGGGGGTTGTAGTCAACAGCATGCGCGTGCAGTGA 1178936 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ===================================== ================== 3 24 100.0 38 GGGACTTCCCCGAGCGCGAGGACG # Left flank : CCTGGTAGACCCCCGCCGGACCATCCCCACGTGCGTGGGGAGCACAGTCCCGGTCGGCATCGCCAGGCCGGGGCGGTTGGACCATCCCCACGTGCGTGGGGAGCACCCGATCAGCCGGACCAGCGCCCGGGCCAAGCGCGGACCATCCCCACGTGCGTGGGGAGCACTCGGCGGCATCCTGCCAGCGGGCGGCGTTGAGCGGACCATCCCCACGTGCGTGGGGAGCACGTCACAGCGGCCACGTGGCGGTCGCCGTCCCGCGGACCATCCCCACGTGCGTGGGGAGCACCGCCCTCGTCGGGATGCAGCCCGGCGAGGGCACGGACCATCCTCACGTGCGTGGGGAGCACTCGCGCCAGTAGGCCCGCACGAGCGCCAGCTCCGGACCATCCCCACGTGCGTGGGGAGCACGGGATCATCGCGTTGACGATCCGCAGCACGTCCGGACCATCCCCACGTGCGTGGGGAGCACCGGGGCAGGGAAGCCCAGGTCATCAACT # Right flank : GGCCCTGCCTATCCTGAAAGCAGCGAACCACAGGAAGGGCAGGGCCTATGCCAGCAGAGTACCCCGAGCCGCTATCGTTCGGTCAGCGCCTCAAAATCCAACGCACCCGCCGCGGGATGACCCGCGAAGTCCTCGGCGGACTCGTCGGCCGATCCGCATCCTGGGTCAAAGCCCTCGAAACCGGCCGACTCAAAGAACCCCGACTCCCCGTCCTCCTCCAACTCGCCGAAGCCCTACGCGTCCGCGACCTCGCCGACCTCACCGGCCACGCCAACCAGCACGTCGACCTGTTCACCGGCCCCAGCCACCGGTATCTGCCCGCCGTGCGCGCCGCGATCGACTCGCTCATCATCACCACCGACCGCCAAGCCCCACCCGTCGAGCACCTACGCGCCCGACTCGACCACGCCTGGGCGGCAAGGCACGCCTCCCCCTACCACCGGGAAGTCCTCGGCGAACTCCTACCCGGTCTCATCGGCGACGCCCAACTCGCCGCAGCC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGACTTCCCCGAGCGCGAGGACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 7 1181738-1180547 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950180.1 Thermobifida cellulosilytica TB100 scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 1181737 30 100.0 31 .............................. CCTGCCAAGTGCGTTGGGGGAGGGTGCCCGT 1181676 30 96.7 31 .............................T CCGCCACGGCGCGCGCGTGCGCGATGCCCGG 1181615 30 93.3 31 ............................CC CTAGCCGCACCCCCCCCGACCCGTCGGCGCC 1181554 30 100.0 31 .............................. CGGCCGGTGTGCGGGCGCTGCGCTCGCGGAT 1181493 30 96.7 31 .............................C CGACTAGGGGAGAATCAGCAGGTAAAAGGCT 1181432 30 96.7 31 .............................C ACTTCGGCCGCACGCTGAAGCGTGATGCCAC 1181371 30 96.7 31 .............................C ATCGCGTCGCCCTCCTGGGCGAGCCGCTGCC 1181310 30 100.0 31 .............................. GCTTAGGCAGCGGGAATTCCTTGCAGAACGG 1181249 30 100.0 31 .............................. ATGTCTTGGCCGCGACGTGGTGCGCGATCGA 1181188 30 100.0 31 .............................. TCGCCGAGTTCGGGACCAGGTTCGCGGACTG 1181127 30 96.7 31 .............................A TCGAGGAGCAGATCGAGAACGACTGGGCGCC 1181066 30 96.7 31 .............................C CCTGGCCGTGATGGGGATCGGCACGACTGCG 1181005 30 100.0 31 .............................. AAATGTCTCGCGACGAAACGATTCTTAATGA 1180944 30 100.0 31 .............................. CCCCGCACCAGGTGGTGCGGGGCCTACCCTG 1180883 30 96.7 31 .............................T CAGGTAGCAGGGAGTACACCGGAACCGGATC 1180822 30 100.0 32 .............................. GCCGACGTCGTGGAACTGGTCAGTGACCAGCT 1180760 30 100.0 32 .............................. GCCGACGTCGTGGAACTGGTCAGTGACCAGCT 1180698 30 96.7 31 .............................A GCACCATCGCCCGCTACCTGCCCGTCCTGGA 1180637 30 100.0 31 .............................. ACGGCGGCTGGTACGCCAGCCGCCGCGCCGA 1180576 30 96.7 0 .............................C | ========== ====== ====== ====== ============================== ================================ ================== 20 30 98.2 31 GTGCTCCCCACGCACGTGGGGATGGTCCGG # Left flank : AATGGTCCGCTGCTTTCTCGTGAGCACGAATGCCCGAAAGTCCGCTTCCCACGCACGTGGGGCGGTGTCCGTGCCGCAGTGACCGTCTCCGCCTGCTTCGGCCGGGAGGCCCGGCAGCCCTGACCACCCCGCGGGTACGGGAGGGGCTGTCGGCCGCCGGGGTCCCAGGCGGTGAAGCACCAGGGAAGAACGGGGGTGCAGCGCTGAGGAAGGGGAGCCGCCGGGTTCCCGGATGGCGAAGCGCTGCGGAAAGCCGACGGTCCCTCAGGTACCGGAGCGGCGGTCAAGGCTGCCGGGCCTCCCGGCCGAAGCAGACTGGAGGCTTCCCCGCCCGCATTGCCCCACTAGGGGTTTCGTGCCTGCACCTCCAGGATCCGACCAACCAACCGGAACGGCAGCGTTCTACCGCGAAATTGGCCTAGGCTGACTCCACAGCCGGAGGCTGCCCGTGTGGTTGGTCACGCCAAGATAACGCCCTGAGAAATCGCAGGTCAGCTTCT # Right flank : CTACTGCGACGACGCCCTCAGGATGTCCTGCGCCCGCTGCTCCGCCCCCAGGTCGGCGAGCAGCCGGTCCATGGTCGGCGCGACGATCTCCCGCCGCCGATGCTGCTGGGCCTCGACCTCGGTGAGCGGGTCGTGTCGCCAGGCGCGCCACCGCCGCCAGGTTTCGCGGTTGGGGTCGTAGGTGATCTCCCACAGCGGGAAATCGAGGCGGAGGCGGGCCAGCGCGTCCTGTAGGGGGTCTGTCGCGGTCATGACACCCACGGTAGACACGAGACACCAGAGGCAGGGGCACAGTTTGTGCCCCCACCTGTGTCTCTCTGCTAGTCCATGCCGACCCGCGCAGCCAACGCCGCGGCCCGCTGCCGCACCATCCCCCGCCGCGTCTCGACCTCCTCCAGGATGATCCGCCGCGCATACCCGTTGTAGCGGATGGTCTCCGGCGCAGCCTCGAACGCGGCTTCCAACGTCGCCAGCGCCGCCACCGGGTCCCCGGCGAGGTG # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 56867-58358 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950186.1 Thermobifida cellulosilytica TB100 scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 56867 30 96.7 31 .............................G ACGCGGACGCCCTGTCCTCTCGCGGTTACGT 56928 30 96.7 31 ............................T. TCGGCGAGGGCGTGAAACAGGTGGTGGCCGC 56989 30 100.0 31 .............................. CCCCGCCCGCCGCGGCCGGTCGGGACGGAGG 57050 30 100.0 31 .............................. AGCAGACCCGGTACATCCCGTTGGAGGTGTG 57111 30 96.7 31 .............................A GAACAGTGCAACCCACAGTGTTGCATACAGC 57172 30 100.0 31 .............................. CCAGGCCCGCGTCGACGAACTCGGCGCCGAG 57233 30 96.7 31 .............................G CCTCGACCACCCAGGAGCAGACCGTGAGGAT 57294 30 96.7 31 .............................A CGCGGAGGCAGCGTAGGCAGGCCCCCAGGGA 57355 30 100.0 31 .............................. AGTCGCGACTCCTCGGGCAGTCGAGGCTGCT 57416 30 100.0 31 .............................. ACTCGCCGGAAACCATCAGTTCGTGCCGCGT 57477 30 96.7 31 .............................G ACCGCCTCCCGCGGCTGCTGGAACTGGAACT 57538 30 100.0 31 .............................. CGAAGCCGCCGTCCGACAGGCCCGACTCGAC 57599 30 96.7 31 .............................G CGGCCGCGGAATCCAGCCCGCCGTCGGCCCA 57660 30 100.0 31 .............................. CCTACCACGACAGCGACCGGTTGGCCCACCA 57721 30 96.7 31 .............................T CGTGGACGTCGTTGATGGTGGCGGCCCTCAG 57782 30 100.0 31 .............................. GCGGCCTGAGGTCAGGTGCGGCCCGGGTTAA 57843 30 100.0 31 .............................. GCCACGGTCACCCTCCGATCTGCTGGAGTTC 57904 30 96.7 31 .............................T CGAGTGCCACGTGATCGATTCCATTGGGGAA 57965 30 96.7 29 .............................A GCACGGTAGTGCGGATGCCACCCGTTGGC 58024 30 96.7 31 .............................T ACACGCCGATCGGGGCGCCCGAACAGCTCAA 58085 30 96.7 31 .............................G TCGCCAAATAGCTGGCGACGGCCTCGGGCCG 58146 30 93.3 31 ............................TT CTGGTCGGACGGCAACCCCATGATGCAGCTC 58207 30 96.7 31 .............................T CCGGGAACCTGTACGCCTGACAACGCGACGC 58268 30 96.7 31 .............................A CGAGCGCTTCCTTGGGCGATCCCTTGCTGAG 58329 30 96.7 0 .............................A | ========== ====== ====== ====== ============================== =============================== ================== 25 30 97.8 31 GTGCTCCCCACGCACGTGGGGATGGTCCGC # Left flank : GCAGCCGTCCCTGGGAGGTGCACGAGGGCGCTACCTCGTCGGGGAAACTTCCAGGGCGCGCCGGACGGCAGGAGCCCTGGCAGGCAAAGCGCCGGGGAGAGAGGTGCGCCGGGCGGCCGGGCGGCGGTTCCCGGATGGCGAAACGCTGGAGAGCGCACACCGGACAGCAGACACCCCGGCCGGTGAAGCGCCAGGGAGGATGCCGGGGTCAAGCGTCCGGGGCGAGTTCCCTGGGGTGCAGCGCTACAGAAAGCCGACAACCCCTCAGGCACCGGAGCGGCGGTGAAGGCTGCCGCGCCTCGCGGCCGAAGCAGACGGACAGTTCAGCGCCCACACCGCCCCAGCCGGGGCGTCCTGCCCGCGCCTCCAGGACTCGACCACCCAACCGGAACGGCAGTGTTCTTCCGCGAGAATTGGTCTAAGCTGACTGCGCGGACTGAGACCGCCTGCAAGGTTGATCACGGCAAGATAACGCCCCGAGAAACCGCAGGTCAGTTTCT # Right flank : AGAGGTGCCTATGCGCCGCCCCTACAAACATGCCGCCGCTGTCGCTGATCTTCGCGCCCGCATCCTGGACGGCACCTATCAACCCGGCGACGAGTTGCCATCAATCGCCCAGATCAGAGCCACCTACGGTCTAGGAGACCGCGCCGCCCGCGCCGCCATCCGCGAACTAGTCGAACAAGGGCTAGCCGTGACCAGAATCGGCCACGGCACCTACGTCCGAGAAGACGCCACCCCGCAAAGCGTCCCCGCCGGACGCCCCGCAGCCCCCCGAGCCCGCCGCACCCACGCCGCCCGCCGACTCGCCCCCACCGACGCCCCCACCGCCGGAGACGAAGACCTCACCCCTACCACCAACACCACCACCACCGAGTCCCCGCCGCCCGACGTCGCCCTCATGCTCGACATCGACCCAGCCGAAACAGTCACCACCGAGCGCACCATTTTGAGCGACCCCGCCGGACCCGTCGCACTCCGCACCACCTACCGGCCCCAGACCACAG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 62958-63354 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950186.1 Thermobifida cellulosilytica TB100 scaffold7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 62958 30 80.0 31 CCCG.....T.C.................. ACCCCGGGCGGGGGCATCCGCTCCGGGGCCG 63019 30 100.0 31 .............................. ACCCCGGGCGGGGGCATCCGCTCCGGGGCCG 63080 30 96.7 31 .............................T GACGCCCCAGTCATTCACTACGTAGGTGGCG 63141 30 100.0 31 .............................. CTACAACAACGGGCTGGTGGAAAAATGCACC 63202 30 96.7 31 .............................C TGTTGGTCTTCTCCAGGTACAGCTTGAGCGG 63263 30 96.7 31 .............................C GCGGCTTCCAGCAGGCTGTGCAGAACAGTCG 63324 30 86.7 0 .............G............G.TG | C [63329] ========== ====== ====== ====== ============================== =============================== ================== 7 30 93.8 31 GTGCTCCCCACGCACGTGGGGATGGTCCGA # Left flank : AGCACGGCCCGATCACTGGCCCCCGGTAACGGTCGGGTGCCCGGATCTGGCCACGTCCGCGCCTCACGGCGGGTCCCTACGGATCGGGGCCAGGGCGGAACAACAGCGGGCAGGGGCACGCCCCCGCCCAACGCCGCGCCAGCTTACGGCCCCGATCCTCCCGCCGTGATGCGCTCCCGAGGCCAGATCCGTACACCCTCCCCGCCGCACCCGCAGGCCCGCACCACCCACCGAAGGACTCCGGACAGCCAGCACCGCGCCGGAGCAGCGCCGAACGTACCGGCCAGGAGACCCCACCCACCAGGCGCAGCCCACCGAAAGCAGTGAGTGGCCCACACTGGCCCGTGTATGGCCCGTGAAGGATGAGCACCCACGCCCAACCGCGCCCACGGATGCGACACCAGCAGCACCACGCCAGCCACCCCACCGCATCAGCGCATGTCACAGCCCTAGCCCGTGACATGCGGAAGGGCGATGCCCCGACCGGACACCGCCCCACC # Right flank : GTGTTGCAGCAACAGTTTCTGTCTGCTTCGGACGCGAGGCGCGGCAGCCTTGACCGATCCTCGGGCGCGGGAGGGGTTGCCGGGCGGCGGGTTTCCGGGTGGTGAAGCGTTACGGGAAGCTGACAGTCCCTCAGGTACCGGAGCGGCGCTCAAGGCTGCCGCGCCTCGCGGCCGAAGCAGAGGGGACAGTGAACCGCTTCCAACAGCCCTGGCCGGGCCGTGAAGTTGCGGCACCGCGTCGCCGTCTTCCATGGCCCTGGGGGCAGAGCAAGCGTCTGTTCTGTCCCTGGGGCCATGATCGTCAAGGCCGTGCGGGTGGTCGTCCGTGGAGTTCGGCGGCAGGAGAGCTTCGGGCCGGTTCCGCGGTCCAGCAGGTATCTCGGGCAGCGGGCAGGACACGAGCGGACTGTGGGACTGCGGGGGCGTTGCCGACGGCTGGGGTGCTTGCCCAGGTTTTCCCGAGTGAAGGAAAACCGCCCGGGCCGCTGGTAAAGTCCCAG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 126809-128546 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950182.1 Thermobifida cellulosilytica TB100 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 126809 30 96.7 31 G............................. TCGGCTTCAGGACGTTGTCCCACGCCCACTG 126870 30 93.3 31 G............................T ATCTGATCGGTCGGGGGTCCCACTTCGGCTT 126931 30 93.3 31 G............................T CGCGGCCGGGGCCACCGCCCCGGCCCTGTTC 126992 30 96.7 31 G............................. CCGCCGTCAACTCCGATGAGCTGGCCGAGGG 127053 30 93.3 31 G............................G CGGAACACCGCACCGTGTGGGAGGCACGCGC 127114 30 93.3 31 G............................C TGCTGATCCCGTTCCACAGGGAGGAGATCTT 127175 30 93.3 31 G............................C ACAGCTTCAACGGGGCGGCCGCTCGGAACCG 127236 30 96.7 31 G............................. CCCGCGTGTCCGAGGCGGGTCTGGCCGCGTA 127297 30 93.3 31 G............................T GCTCGCGCGGGAGCTGGTCAAATGGCCTGCT 127358 30 93.3 31 G............................C CTGGGGGGTGGCCTGCTCCCCCCCGTCGGCC 127419 30 93.3 31 G............................T CCCGGAACCGGTCCTGCTGCTGCTGGTCGTC 127480 30 93.3 31 G............................C CCAGGGTCGAGGACGCCAGGGGGTGAGGGCA 127541 30 96.7 31 G............................. CCCCATGACTACGGAGCGGCCGACCATGCTG 127602 30 93.3 31 G............................T CCCCGGACGTGCCCCAGCGGATCTGGCGGCC 127663 30 93.3 31 G............................T CCTTCCGGAACTCGATGGATGAGGCGTGGCG 127724 30 96.7 31 .............................T CCGCCGCGATCGCGACCGCGGCCACGTAGCC 127785 30 96.7 31 .............................C CGAGCCATTCGCGGACCACGCGGAACTCGGC 127846 30 96.7 31 .............................C CCTTCGCTTCCGCGGTTTTCCCGGCGAGCGC 127907 30 100.0 31 .............................. GCGGACGCGAGTACTGGTTGCAGCTCCAGGA 127968 30 100.0 31 .............................. AGCGCCGGTTCGAGGCGCGCCCCTACCCGGA 128029 30 96.7 31 .............................T CCTTCTTGGCCTCGGCCATCTGCCGCGCCTG 128090 30 100.0 31 .............................. ACGGCCCCGCACTGGTGACTCCACCACCAGC 128151 30 96.7 31 .............................C GTTGTCCACTCGCGTGGCTTGAGTACCTGCC 128212 30 96.7 31 .............................G CAGCCGGTACGGAATCGTCGGCTGCCCGGGT 128273 30 96.7 31 .............................C ACTGCTTCCCCGGCGCGGCCGACATGGACAT 128334 30 100.0 31 .............................. ACCGCCGCGGCCGGTCGGGACGGAGGTCGCG 128395 30 100.0 31 .............................. AGCGGAGTTATCCAGGCTGCGCTTGGGGTGC 128456 30 96.7 31 .............................C ACCGCGTGTACTTCAACAACATCGCCGACTA 128517 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 29 30 96.1 31 CTGCTCCCCACGCACGTGGGGATGGTCCGA # Left flank : GACCACACCCGGGTTCGCCGGGGCTGTCGGCCCCTGCCGGGGGTGCCCTGTGGAGGGGGGCAGGACACCCCGGCCCCCAAGACCCCCAAGACACAGAAGGAGGCAGAGAAGAAGCCACGCAGAGGCGGCATCCGCACCCAGTGACCGTCCCCGCCTGCTTCGGCCGGGAGGCCCGGCAGCCTTGCCCGCCCCTCGGGCGCGGGAGGGACTGTCGGGCGGCGGGTTTCCGGGGGGTGAAGCGCTACGGGAAGCCGACAACCCCTCAGGTACCGGGGCGGCGGTCAAGGCTGCCGGGCCTCCCGGCCGAAGCAGACAGAAGGCTTCCCCGCCCACACCGTCCCCGCCCGGGGGCGTCCTGTCCGCGCCTCCAGACCCCGGCGAACTGGTCGGAACGACGGTGTTCTTCCGTGAATGTGGTCTAGGGTGGAGATGCGGGCTGAGACTGCCTGCAAGGTTGATCACGGTAAGATAACGCCTCGAGAAACCGCAGGTCAGCTTCT # Right flank : ACGGCCCCGGGGGCCGCGGGGCAGCCTCGTCGTCCCGCGCGTGGGGCGTGCGTGGCCGTCGCGTTGGGAAAGGTCCCCGCCCCACCGGCCGGGGACCTTTCTGTTCCGGTGTGGTCAGGCCAGGTCGTACTTCGGGCGTCCGCGCAGGCCGAGGCCCAGGAGGACGCGGCCGAAGGCGGGGGAGACGTGCTCCTCGAGGAGGCGGACGGCCGTGTAGTAGGCCCCTGCGACGAGGACGGTGACGAGCTCGGTGAGTGCGGCTTCCGGCAGTTCGACGCCGAGGTAGGTGACGGCCAGGGTGCTGAGGGCCCCGACGATGAACGGCACGGTCGTGCGGACGATGGACGTGAGCATGGCGACCTCCCGGTCGACTGGGTGACGGAAACGGGGAGGGGCGAGAGGGGGAGGAAGCCGGAGGAGCTGGATCGGGAGCGGTGCGGTGCGGGACGGCGTCGTCGGGTCAGCGCAGCCAGACGTGTCCCTTGAAGGTGGCGGTGTGC # Questionable array : NO Score: 5.34 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.28, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCACGCACGTGGGGATGGTCCGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 236340-236552 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950182.1 Thermobifida cellulosilytica TB100 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 236340 30 100.0 31 .............................. GGCGCGCTCACGCGGACCACTCCCCCCAGTC 236401 30 93.3 31 ............................TC CGCGTACCGTTGGCTCCCCAGAGAACCATGC 236462 30 96.7 31 .............................C CGAACGCGACGCCGCGATCCGCGCCGCCGCC 236523 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================== ================== 4 30 97.5 31 GTGCTCCCCACGCACGTGGGGATGGTCCGG # Left flank : GTTGCCGCATCCAGGTAGCCCAGGCCCACCCCCAGGCCACCCCGGTCCACCTGGCCACCCTCCTCCGGGGAAGGGAAGTGCGGAAAGGGGGAGAAAGGGGCAAATAACCACAAACATCCCTTTTGGGAAAAGGTGGGCACCGGGTCCCGGGGCGGTGCCTGTCAGAGGAAGAAAGAGAGGCGCTGGTTCCCCAGGAGGTGAACCGCCAGGGAAAGGGAGTCGGCGGGCTTCCGGGGGAAGCGCTCCGGAGAGCCGACAACCCCTCAGGCACCGGCGCGCCCCTCAAGGCTGCCGGGCCTCCCGGCAGGAGCAGACCGGAGGCTTCCCCGCCCGCATCGCCCCCACCCCCGGGGCCCCGTCAGCGGCTCCAGCACCCGACCGCCCGCTCGGAACGCCAGTGTTCTTCCGCCAAAATTGGTCTAAGGTGACTGACGGGCTGAGACTGCCTGCAAGGTTGATCACGGCAAGATAACGCCCCGAAAAACCGCAGGTCAGTTTCT # Right flank : GCCTACGCGGGGGTGCAGATGGCGTGGCCCGAGTGCTCCCCACGCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGTGGGGATGGTCCGCGTGCGCGGGAGCGACCTCGCGCACGACTCCGGTGCTCCCCACGCACGTGGGGATGGTCCGCGGGATCAGCGCCGCGGTGTGCTCCGGCTCGCGTGCTCCCCACGCACGTGGGGATGGTCCGTACGTTGGGGATGAACTAAAGAAGTGAATTTGGTGCTCCCCACGCACGTGGGGATGGTCCGCGTCGCCGCGGCATTCGGTGGCGTTCGACATGGTGCTCCCCACGCACGTGGGGATGGTCCGCGGCACCGGAACCGTAGGGCGCTTCTGCTGCGGTGCTCCCCACGCACGTGGGGA # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 236786-237914 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950182.1 Thermobifida cellulosilytica TB100 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 236786 30 100.0 31 .............................. GGGATCAGCGCCGCGGTGTGCTCCGGCTCGC 236847 30 96.7 31 .............................T ACGTTGGGGATGAACTAAAGAAGTGAATTTG 236908 30 100.0 31 .............................. GTCGCCGCGGCATTCGGTGGCGTTCGACATG 236969 30 100.0 31 .............................. GGCACCGGAACCGTAGGGCGCTTCTGCTGCG 237030 30 96.7 31 .............................T CCGGCGCGGCCCGCGTCCTGGACGGCGCGCC 237091 30 96.7 31 .............................G TGTTCGTGCCACGTGTCCGTCTTGTCCAGCC 237152 30 96.7 31 .............................G GTGACGACTGGCATCCCCGCGCCCGGAACAT 237213 30 96.7 31 .............................A CGGCGGCCGTGGTCAACCGGTCCGCACGCCG 237274 30 96.7 31 .............................G TCAGCCACAACCCCACGTGGCGTGTGCGCCG 237335 30 96.7 31 .............................A CGTCTGGGGACGGCGGAGTCATCTGTTGGCC 237396 30 100.0 31 .............................. TGCGGAAACGTCGCACTCGGTCGGCTCGCCG 237457 30 96.7 31 .............................G GCCGCAGCATGGGAGTGACCAGCAGTGCCAG 237518 30 96.7 31 .............................G ACCTTTGACCATCCACAGGATCGGTACCGCG 237579 30 93.3 31 ............................TT GGTGGGTGGGCGCGTCAGCGCACGGAGGGGG 237640 30 96.7 31 .............................T CACGAAACCGCATGAGAAGGGGGCGCCGGTG 237701 30 100.0 31 .............................. CGTCGCTAGGCGCTGGGGGTTCCCTGGATAC 237762 30 96.7 32 .............................G TTTCGTTCCCTGCCTCTCCGTCCTGGGGGGTG 237824 30 100.0 31 .............................. GCGGCCGGGCCAGACCGGCCGCCGCGCGTGC 237885 30 86.7 0 ..........................TGTA | ========== ====== ====== ====== ============================== ================================ ================== 19 30 97.0 31 GTGCTCCCCACGCACGTGGGGATGGTCCGC # Left flank : CTGCAAGGTTGATCACGGCAAGATAACGCCCCGAAAAACCGCAGGTCAGTTTCTGTGCTCCCCACGCACGTGGGGATGGTCCGGGGCGCGCTCACGCGGACCACTCCCCCCAGTCGTGCTCCCCACGCACGTGGGGATGGTCCTCCGCGTACCGTTGGCTCCCCAGAGAACCATGCGTGCTCCCCACGCACGTGGGGATGGTCCGCCGAACGCGACGCCGCGATCCGCGCCGCCGCCGTGCTCCCCACGCACGTGGGGATGGTCCGGCCTACGCGGGGGTGCAGATGGCGTGGCCCGAGTGCTCCCCACGCACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACGTGGGGATGGTCCGCGTGCGCGGGAGCGACCTCGCGCACGACTCCG # Right flank : AGCCCGTTGTCGCCCGTGCGGCTATCTGTGTTCAGGTGCGGGTGACGTGGTCGGGGTGGGCGATGGTGTTGCCGGAGAGTCTGAGCATGGGCGGCAGGCCCGGCGAGTCGGTGTAGCCGGTCACCGTGTGCAGGTTTCCCCCGAACCGCACCCGGGCACCGACCGGGTAGGCGTCGCGCAGGGCCTCCTCCTCGCGGGCACGGGCGATGGCGGCCAGAGCCTCGGCCAGGGCACGGATCCGGGCCGGGGACAGCTCGGTCTTGCCGCGCCAGACCCGGTTGCCGCTGACGAGGTAGATGCGCACCTGCTCGGACCGGCCGGTCACGGGGCCTCCTCCCTGGTATCTCCTTGGGTGTTGTCGTTGTGGTTGAGCAGTCCGGGGGCGGCGTAGATCCAGCGGTCTTCGGTCTGCTGGTAGAGGCCGGAGGCTCCGCAGTGGGTGAGGAGCAGGAAGCGCTCGTCGCCGTGGTCCTGGGCGAGGGTGTCCAGGTGGGTGCGGG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 298183-300531 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950182.1 Thermobifida cellulosilytica TB100 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 298183 30 96.7 31 .............................C CGGGGGCGCCCGTGCTCGTCGACGCCGCCGC 298244 30 96.7 31 .............................C GCCACCCACGCTCACGAGCTGGTCGGGCTGG 298305 30 96.7 31 .............................A TCGGCTTCAGGACGTTGTCCCACGCCCACTG 298366 30 93.3 31 ............................CA GACCGACTCGACTCACTGACTGGGGGACCAC 298427 30 100.0 31 .............................. CGTCCTGCGAGTAGATCTTGACGCCGCTCTT 298488 30 100.0 31 .............................. CGATCCGCAGGTACCGGATCGACCTGGGCAA 298549 30 96.7 31 .............................A CCGCGTTCGGCCCGGTGCGGGATGCAGTACA 298610 30 100.0 31 .............................. CGTGGCCGTACTGGACGAGTATCGGGACATG 298671 30 100.0 31 .............................. GTCCGACACGTTTCAGACGTGCCGAATCTCT 298732 30 96.7 31 .............................C GCAGAGACGATTCAGGAGTTTCTGCGGTAGG 298793 30 93.3 31 ............................TT CGTGTGGCAGGTTTTCAGCGACGAAACTCCT 298854 30 93.3 31 ............................TT CGTGTGGCAGGTTTTCAGCGACGAAACTCCT 298915 30 100.0 31 .............................. CCGAGTTCGGGTTGCAGATCGGCAAGGAGCT 298976 30 100.0 31 .............................. CCTATGAGGTTATCCGCAAGTGGCAGTCCCG 299037 30 96.7 31 .............................A TAAACCCGGACATCATTACCGTTAGGGGTTA 299098 30 100.0 30 .............................. GCTCCAGGACTCGGGGCCGCTACACCGTGA A [299126] 299159 30 96.7 31 .............................C GCGTCAGATCGACGCTGGCGCGCCAACCCCA 299220 30 96.7 31 .............................T CCTCGGAGGGGCGCGGCCGCTACGCCCTGGG 299281 30 93.3 31 ............................TC CGGGCGCAAGCAGGACCCGGCACAGAGGCTC 299342 30 96.7 31 .............................C GTCGCAGACCGGTTGGTGGGTGGGTTATCGG 299403 30 96.7 31 .............................A ACGCCGCTCTCACGATCTGGTTGTCGTGCGC 299464 30 96.7 31 .............................T CCTCGGAGGGGCGCGGCCGCTACGCCCTGGG 299525 30 93.3 31 ............................TC CGGGCGCAAGCAGGACCCGGCACAGAGGCTC 299586 30 96.7 31 .............................C GGTCGTTCCGCATCGAGTCCACCCGGCGTGG 299647 30 96.7 31 .............................A ATCCCTCCCTCCCGTCGGTGAACCGTGTCCA 299708 30 96.7 31 .............................C TAGCGGTGCTCATCCCCGTGTCCGAGGAGGT 299769 30 96.7 31 .............................C GGCCCCCGTCCACCACTGGACGGGGGCCGCT 299830 30 100.0 31 .............................. CCCACCCGCTGCACCAGCTGCTGCGCGCCGA 299891 30 96.7 31 .............................A GGGCATGATCGCCTTCGTGGCGGGTCTGGAC 299952 30 96.7 31 .............................C GGCAGGACTCTTCGTCGAAGTGCCCCACCAT 300013 30 100.0 31 .............................. GCCTTTGACCATCCACAGGATGGGCACCGCG 300074 30 100.0 31 .............................. CGTCGGAGTAGCTGACCCACCAGCCGCGCTG 300135 30 96.7 31 .............................T CGACCGCCCAGGAATCCGCGGACACCTCCGC 300196 30 100.0 31 .............................. TGGTCGCGGATCTGCCCGGCCGCGGCCATGA 300257 30 96.7 31 .............................T ACTCCGGCTCCGAACCGATGTTCTTCGCCCG 300318 30 100.0 31 .............................. CGTTCGCGACCGGCCGCGGCAACGCCACCAA 300379 30 96.7 31 .............................T ACTCCGGCTCCGAACCGATGTTCTTCGCCTG 300440 30 96.7 31 .............................T ACTCCGGCTCCGAACCGATGTTCTTCGCCTG 300501 30 100.0 0 .............................. | C [300527] ========== ====== ====== ====== ============================== =============================== ================== 39 30 97.4 31 GTGCTCCCCACGCACGTGGGGATGGTCCGG # Left flank : GCATCGGGGAGAGACCGGGGATCGTCGGACGGCAGACACCCCGGCGGCAGGTCGCTGCGGGAGTCCACGCCGCGCGACCCGCCCCAGCCGGTGAAGCGCCGGAACGGGGTGCGGTCAGGTGCCGGACGAGTTCCCAGGTGACGGAGCACAGGAGAGAGGCGTGAGGGCGGAAGCCCAGGCCGGTGAGGCGACGGAGAGGAGGTTGGCGCCAGGCGTTCAGGAGCGGATTCCCGGGCGGTGAAGCGCTACGGAAAGCCGACAACCCCTCAGGCACCAGCGCGACGCCCGAGGCTGCCGCGCCCCGCGGCCGAAGCAGACCGGAGGCTTCCCCGCCCCCCTCGCCCCCAACCGGGGCACTGCCCGCGCCGCAGGACCTGACCACCCAACCAGACCGGTCGTGTTCTTCGCGAAAATTGGTCTAAGGTGACTGCACGGGCTGAGACTGCCTGCAAGGTTGATCACGGCAAGATAACGCCCCGAGAAACCGCAGGTCAGTTTCT # Right flank : GAGGTCGCGGCGGATGCGGCGGATCGTGGACGTGCTCCCCACGCACGTGGGGATGGTCCGGTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 301521-303074 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950182.1 Thermobifida cellulosilytica TB100 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================= ================== 301521 30 96.7 31 .............................T CGCGTAGTAGGCCGCCACGCGCGCCCTGGTC 301582 30 96.7 30 .............................C AGGACGGCGTCACCATCCTCGGCGACACCA 301642 30 100.0 31 .............................. GGCGGATGAGGGTCCGCCCTTTCGCGGACGA 301703 30 96.7 31 .............................C CCTTGACCCCGACCCGGGTGATGCTCGCCCT 301764 30 96.7 31 .............................C GGTTCCCCGTTCCCCGTTCCCCGCTCCTGTT 301825 30 96.7 30 .............................A TCGGTGACGCCTGCCGGGTTGTGTGGAACA 301886 30 93.3 31 ............................TC CGCCCTTTCCCCGCCCGGTTGGGCGGATGAG 301947 30 96.7 31 .............................C TCGCCGCGCGCGTCCCCCGCCGTTAGAACCA 302008 30 93.3 31 ............................CT TGACGCGGGCCGCACCGCCGCGCAGGGTGCG 302069 30 96.7 31 .............................A CCAGGCAGGTACTGGGACCGGACTGGCGCGC 302130 30 100.0 31 .............................. CGCGCCCGAGCGGCGCGCCTCCTTCGTGGTT 302191 30 100.0 31 .............................. GGCTTGTAAACGTAGCAGCTACATTGCATTC 302252 30 96.7 31 .............................C TCGTGGACTGGGCGACCGGCGCGCCGGAGGA 302313 30 100.0 30 .............................. GCCTGCGCCCGGTGTGGAACCGGGTCGCCG 302374 30 96.7 29 .............................A AGTAAGAGGCTCAAGCTTGGCGGAAACCT 302435 30 100.0 31 .............................. TCGCGGATAAGGTTCCCGGGCTGTCCGAGCT 302496 30 100.0 33 .............................. ACGGATCCTGACGAGAGAGCCCCGGCGTGAGCG 302558 30 96.7 30 .............................A GTGTTGATCGGTCCCACGACCCGGTCACGC 302619 30 96.7 31 .............................A CGCCGTACAACCCGCTGTACGACCGGATGCA 302680 30 96.7 31 .............................A AGCTCAAGACCTGCTGCATCTCCGCGAGGTC 302741 30 100.0 32 .............................. GGCGGTCCCACGCGCTGGTCCCGGACCGGCCG 302802 30 100.0 31 .............................. CCGCGCGCCGCAAGATCCGGGCGTGGCAGGC 302863 30 96.7 31 .............................T CGGAGACGGAGACCGCCGAACAGCTCGAGTT 302924 30 90.0 31 ..........G.................CT ACTGGCGCACCGCACCGGGCTGAAACCCAAC 302985 29 83.3 31 ......T..G......C.....-.....C. GCTCCACGAACCAGCCGTAGCCGCCCTTCTG 303045 29 73.3 0 ......T..G..T...C....-...G.T.T | T [303069] ========== ====== ====== ====== ============================== ================================= ================== 26 30 95.8 31 GTGCTCCCCACGCACGTGGGGATGGTCCGG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTGGTCGTGCTCCCCACGCACGTGGGGATGGTCCGCAGGACGGCGTCACCATCCTCGGCGACACCA # Right flank : TGGTCTGTTCTCGCCTGTGCGGTTGTCTGTGTTCAGGTGTGGGTGGGGTGGGTGATGGTGTTGCCGGAGAGTTTGAGCATGGGCGGCAGGCCAGGGGAGTCGGTGTAGCCGGTCACGGTGTGCAGGTTGTCCCCGAACCGCACCCGGGCGCCCACCGGGTAGGCCTTGCGCAGGGCGTCTTCCTCGCGGGTGCGGGCGATGGCGGCCAGGGTCTGGGCCAGGGCGCGGATCTGGGCGGGGGACAGTTCGGTCTTTCCTCGCCAGGCCCGGTTTTCGCTGATGCGGTAGATGCGCGCCTGTTCGGACCGGCCGCTCACGGGGCCTCCTCCCCGGCATCGCCCTTGGGGTTGTCGTTGGTGTTGTCGTTGTGGCCGAGTAGTCCGGGGGCGGCGTAGATCCAGCGGTCTTCGGTCTGCTGCTGGTAGAGGCCGGGGGCTCCGCAGTGGGTGAGGAGCAGGAAGCGCTCATCGCCGTGGTGCTGGGCGAGGGTATCCAGGTGG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 522420-525927 **** Predicted by CRISPRDetect 2.4 *** >NZ_KQ950182.1 Thermobifida cellulosilytica TB100 scaffold3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 522420 30 100.0 31 .............................. ACTTCGACCAGGCACTCCTGGAAGAGCTCGC 522481 30 96.7 31 .............................T CGGATCGGGCCATCCCCACGTGCGTGGGGAG 522542 30 96.7 31 .............................A GGACGCCGATGTCTGAGACCACGCCCCGTCC 522603 30 96.7 31 .............................G TCACCGCCGAGTACGTCATGGAGCACCTCCC 522664 30 100.0 31 .............................. CAAGGCCGGGCGGGTGCTGTCGGCGAAGAAC 522725 30 96.7 31 .............................G GCACCAAACGCTGCACGGTCCAGGGCTGCGG 522786 30 100.0 31 .............................. CTAGGCCTCATCGGTTTTCTCCCTAGCTAGC 522847 30 96.7 31 .............................A CCTCATGCAATCGGGCGGTCTCGTCATCGTC 522908 30 96.7 31 .............................G AGCGCCGTGCACGCGCCCATGCTCTCCCGGA 522969 30 96.7 31 .............................T CGACAACCGGCACACCCTCGTCGTGGGGATG 523030 30 96.7 31 .............................A TCGTGTCGGTTGCCGCCCGCCGCGACACGTT 523091 30 96.7 31 .............................G CCAGGAACGCGTTGATCGCCAGGTTCTTCGC 523152 30 96.7 31 .............................G CCATACCACGGGCACGGACGTCCGGTTGGCG 523213 30 100.0 31 .............................. CGTCAAACCCATCGCCCCCACCAAACCGGCC 523274 30 96.7 31 .............................A CCGACCCGGCCGCGCTCGCCGAGCGGCTCAC 523335 30 96.7 31 .............................A TCATGCAGACCGCCATGCAGCGAGCCGCCTA 523396 30 96.7 31 .............................A GTCTGCCCCATTTTGTCTGGTTTCTGTTTGA 523457 30 96.7 31 .............................T CGGGGTACCTGCGGGTTCCGGAGGCCTCGAG 523518 30 100.0 31 .............................. CACGGGCGGAAACGTGATTACCGCGCGGTTC 523579 30 96.7 31 .............................A ACTCGGCCCAGGACATGGGGCGACTGATCGC 523640 30 96.7 32 .............................G CCGCGATCGACGGCCTGGTGGACGCCCGCGTG 523702 30 100.0 31 .............................. GGTTGGGGCCGCACGCCGAGGCGGCGTGGAC 523763 30 100.0 31 .............................. AGTGGATAGGGGCACGACCCACGCGGGGTTC 523824 30 96.7 31 .............................G CTATGGTGAAGGGCGGTCCGCTCGCTGACCT 523885 30 93.3 31 ............................TA GACCGCGACCCGGCGCGGGTCCCGCGCCTTG 523946 30 100.0 31 .............................. CGCGGCCAGTCGCTTTCCGGGATGCCCTGCT 524007 30 96.7 31 .............................T CGCGGCTCCTCGACCAGTCGCGGCTCCTCGG 524068 30 96.7 31 .............................G GTCTTCCGGAGCCCTGGCAAGCCGGAGTCAA 524129 30 96.7 31 .............................T GAATTCGCCTCCGCTCGCCGCGGTGCAACGC 524190 30 100.0 31 .............................. GTTCGTGGTGGTGCTTCCGGGGGAGCCGAGC 524251 30 96.7 31 .............................G GGGAGGAGTCGTCGCTGTGGCTCCACTGCGC 524312 30 96.7 31 .............................G CCCCGCCACCACCACGGTGACGGGGCCTACT 524373 30 96.7 31 .............................T CGTACTCCTCGTGCAACCACACCGTTTCGAT 524434 30 96.7 31 .............................A GGGCGGCGAGTGATCCACTTCTGCATGAACT 524495 30 96.7 31 .............................G GGCGATGAGCGCCGAGTCGCGCGGAGGCGAC 524556 30 100.0 31 .............................. GTTCGCAACCGGCCGCGGCAACGCCACCAAA 524617 30 100.0 31 .............................. GGCGGGTGGTGCTGGGTGAGTTCGGGCCGGT 524678 30 100.0 31 .............................. CTGCCGCAGACGCTTGCGTCGTTCTCAGCCT 524739 30 96.7 31 .............................G CGAACATCGCCCGAAAAGCGCCGTCCCTGAC 524800 30 96.7 31 .............................A CGTGAAACAGGTCGTGGCCGCCGCGCGCGCC 524861 30 96.7 31 .............................G CGCGCAGGGACAGGGCGTCGCAGTGCGGGCA 524922 30 100.0 31 .............................. GGCTAGCCACACGTTCCTTGTCAACTCAATA 524983 30 100.0 31 .............................. CCGGCAATGTAGGTTTCTCCGTCGTCATCCT 525044 30 96.7 31 .............................G CGCAGGACCTCTGGAATGACCTGAAAGAGGC 525105 30 96.7 31 .............................A TCACCCCGGAGCTGCGCGGCCAGCTCCAGCG 525166 30 96.7 31 .............................T CACCGGACGTGCCCCAGCGGATCTTGCGGCC 525227 30 100.0 31 .............................. GGCCCCCGTCCACCTGAGTGGTGGGCGGGGG 525288 30 96.7 31 .............................A CCGCCCGAGTCGCCGTGGACGGCACAGAGAC 525349 30 100.0 31 .............................. CGCACCTCGCCAAAACGGCCGTGCCGCGCCG 525410 30 96.7 31 .............................T GGCTGTACCGGTCTGGGGTGAAGCGCGGCGC 525471 30 96.7 31 .............................A TCCGCGTCCACACCGACACCGGTGAGGTGCT 525532 30 96.7 31 .............................G CCGCTGCTTCCTTCGGGGACCACAGCCGGTC 525593 30 96.7 31 .............................T ATGCGGCGAGCCGCTTGGGGTCAGAGGCCCG 525654 30 100.0 31 .............................. TGACGGCGGCTACATCGTCGCCCCGCCGTCC 525715 30 96.7 31 .............................A CAGTTCGGGCTTGCCGGACACCTTGAACGTG 525776 30 100.0 31 .............................. CATAGCTCCTCCAACGTCAGGTTGCGTGCAC 525837 30 100.0 31 .............................. CCCCTCCAGAGCCCAAGAGTCGTGGGGGCCC 525898 30 90.0 0 ..........................G.TG | ========== ====== ====== ====== ============================== ================================ ================== 58 30 97.6 31 GTGCTCCCCACGCACGTGGGGATGGTCCGC # Left flank : GACGCCGTCCCCCGGGCCATCGCAGCGGTCACCCGCCCCGGGGAGTAGACGCGGGCGGCCGTGCCCCGGGGCACGGCCGCAGCACAGAAGGGCCTGCCCCGGACGTGGGATTCGAGGGCCGTCCGCCGGGCGGCGGTACGGGGACCCCTGCCGCCTGCTTCGGCCGCGAGGCGCGGCAGCCTTGACCGCTCCTCGGGTGCGGGAGGGACTGTCGGCCGCCGGGTTCCCGGATGGCGGAGCGCTGCGGAGAGCCGACAACCCCTCAAGCACCAGAGCGCCCCTCAAGGCTGCCGGGCCTCCCGGCCGAAGCAGACCGGAGGCTTCCCCGCCCGCATCGCCCCCACCCCCGGGGCCCCGTCAGCGGCTCCAGCACCCGACCGCCCGCTCGGAACGCCAGTGTTCTTCCGCCAAAATTGGTCTAAGGTGACTGACGGGCCGAGACTGCCCTGCAAGGTTGATCACGGCAAGATAACGCCCCGAAAAACCGCAGGTCAGTTTCT # Right flank : GCATTGCAGCAACAGTTTCTGTCTGCTTCGGACGCGAGGCGCGGCAGCCTTGACCGATCCTCGGGCGCGGGAGGGGTTGCCGGGCGGCGGGTTTCCGGGTGGTGAAGCGCTACGGGAAGCTGACAGTCCCTCAGGTACCGGAGCGGCGCTCAAGGCTGCCGCGCCTCGCGGCCGAAACAGAGGGAACAGTGAAGTGCCCCCACCAGCCTGGGCCGGGCCGCGAGGTTGCGGCACCGTTTCACCGTCTTCCATGGCCCTGGGGGCATAACAAGCATCTGTTCTGTCCCTGGGGCCATGATCGTCAAGGCCGTGCCGGTGGTCGTCCGTGGCGTCCGGCGACAGGAGGGCTTCCAGCCGGTTCCGCGGTCCAGCGGGCAGGACACGAGCGGACTGTGGGACTGCGGGGGCGTTGCCGACGGCTGGGGTGCTTGCCCAGGTTTTCCCGAGTGAAGGAAAACCGCCCGGGCCGCTGGTAAAGTCCCAGGTCGCCAAGGGAGCTC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCACGCACGTGGGGATGGTCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //