Array 1 28323-27136 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGYU01000010.1 Bifidobacterium choerinum strain LMG 10510 Contig10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 28322 29 100.0 32 ............................. GTCCACGAATCCTGGAACGAGCCGGTGGTCTG 28261 29 100.0 32 ............................. GTGACATCGGGGTTGTCTGAGCGTAGGCAGAA 28200 29 100.0 32 ............................. GAAAGCGTTGAAACCATTGGGATGACGCTACA 28139 29 100.0 32 ............................. GAAAGCGTTGAAACCATTGGGATGACGCTACA 28078 29 100.0 32 ............................. TCCCGCCGTAGGGTCCGTCTCCACGTAGGGGA 28017 29 96.6 32 ............................A CCGGCCCGAAAAATGGTCAAGAGGGCAGGTGC 27956 29 100.0 32 ............................. TTCAACGACTGCGCACTGTTCGCCGAGTCGCC 27895 29 100.0 33 ............................. GCGACAAGCCCACGCTTATACGGCATCAAGGCG 27833 29 100.0 30 ............................. ATCGCGTATTCCCGGCCGAACGGAACGGCC 27774 29 100.0 32 ............................. GGGTTGCTGTCGGCCCATCGGTCGCAGTCGAA 27713 29 96.6 32 ............................A CTGGATGACGGGCACACGCCTGAGCTTGTGCT 27652 29 100.0 32 ............................. AGGTGTCGTGCCGGCTGGTTGGGGCCGTGTGC 27591 29 100.0 32 ............................. ACGAAATTATCGGTGGAAAACATCATGCAGCA 27530 29 100.0 32 ............................. ATTGGGCTGACGCTACAAACGACCATCTCGCG 27469 29 100.0 32 ............................. AGGCGTCCTTTGATGTGGCGTTTCGGCCAGCC 27408 29 100.0 32 ............................. GTCAGGGCAATCGTCCGTTCGCCGAGGTCGCG 27347 29 100.0 32 ............................. TCAAACCAAACAAGCGAAGGAAAGTGATTGTG 27286 29 96.6 34 ............................G AACAGACGCCGCTTGTTTGAGTTAGCCACGTTGT 27223 28 93.1 32 T....................-....... CTGAGCGGGTTCATGAAGGCGTTCACCGATTT 27163 28 82.8 0 .......T..........T...CA.-... | ========== ====== ====== ====== ============================= ================================== ================== 20 29 98.3 32 GTGCTCCCCGCAAGCGCGGGGATGATCCC # Left flank : CAACGATGTGCGCCTGAAGAACTTCATCGAGATGCGGCACTGGGATTCACTGCCGGTGGAGCGCGCCGAACGGCTCACGCAGATCGTAGGCGACCTGTTCTACGATCCGGAGCGCCGCGGGCGTCTTGAATCGTATTTCAGTGGACTGACCGGCGAGGACGTGCACGCCGCGAAGGCCGTGCTGCAGTCGCGCGGGGGAGACGCGAAACCGTACGACCGGCCGATGGAGTACTGGGCGGAGGTACTGGGCGTCGGGGATACGCTTGATCAGGTGCCGGGGGATGCGATGCGGCCGGAGGTAAGGCAGGGGTAGGAGGAGGCTACTCTAGAAGAGTCCTGCAATTGCGGGAGTGATCCCCCTGTATAGATGTACTTCGGACATGCCCCGCATATGCGGGGAATGATACAGCGGAGGAGGAGATGCGAAGTGCGCCGTGAAAAGTGAATGAAAATGCTTCTCGCTGATCAATGATATGTTGGAAACACAAGGATTTCTTAGT # Right flank : GGGTGCGGTTGCCGAAACGGCGGGGCGGATGCAGGAGTCGGCTCAAGTCGTCTCTGTCGAAGAGAGGAGCATACCCGTTTCCGATGCATCCGCAAATACGGAAGAGGATGAGGGGAACCATGGTGGGCAGAATCCGACCGTGGTTTCGGCCCCTGCTGTCCAAACCGGGCCCGTTGCCGCCGCGGTCGCGCCGGCCGGACCTTCGACGCCCGCTGCGCAGCCCGCTGTGCAGGCTGATGGGAAGGTCGCGTTGACCCGTCTCCTGCAGCCTCTTCATGATGAAGGTCTTCTGGACAAATCCATGACCGCGCAGAAGGCCAATCCGATTCTGGCCGCCAAAGGGCTGATCATCCATACGGAGCAGGGCTACTGGATTCCCACTGACTACGGCAGGAAGCTGGGCGTCGAGGCCAGAAGCAATGAACGGGGCGCCACTTGGCCGCTCTACCCACCCGAGCTGGGCATGCTGGTCCTCGGTATGCTGCTATAGGGACCTGTTG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //