Array 1 594418-596064 **** Predicted by CRISPRDetect 2.4 *** >NZ_FTRL01000001.1 Bifidobacterium breve isolate Bifido_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 594418 33 100.0 34 ................................. TTTGAGATCGCAGCACGTTGCACACCCAATGCAT 594485 33 100.0 34 ................................. AAGGACATGGACGCCTCGTGGGAGTCGTGGCCTG 594552 33 100.0 35 ................................. GACGCGCATTCGCTGATCGGCATGTTGCAGAACAT 594620 33 100.0 33 ................................. CACCTCTACCGGTGGAGCATGAGCCAACGCAAC 594686 33 100.0 34 ................................. AAGTCCCTGGGCGAAGCCCGCCATGATGGCTTTG 594753 33 100.0 35 ................................. TCGTCACGCAGGGAGTATTCGACGGCCACCTCGCA 594821 33 100.0 35 ................................. GCCTGCCGGATGGCGTCGGCATCATCCACCGGACA 594889 33 100.0 32 ................................. CACGTCCGGTGGCTCTATCCATTCGCGCATCA 594954 33 97.0 35 ......................C.......... AGAACGAGGAAGTAGTGGCCACCGTCCTTGAAATG 595022 33 100.0 34 ................................. ACGAGCAGGCCGCCCACGTTGCCCAATGCGGAGA 595089 33 100.0 33 ................................. AAATCCCGAGACACGCCTGTGGATGCCCCCATT 595155 33 100.0 33 ................................. TCCATCGCCACGATGCCGGCCAGATCCACCACG 595221 33 100.0 36 ................................. CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC 595290 33 100.0 35 ................................. ATGTACATGAACCGAACGCAGCACCTCCGGCGCCC 595358 33 100.0 35 ................................. CAACAGTTTTGGGCCACTCCGGGAAGGAACAGCCG 595426 33 100.0 35 ................................. TTTGGAGTGCCTGAGCGTGGATTTCGGTCTGGCGA 595494 33 100.0 33 ................................. GCCAACGTGGGACGCATCCCCAACTTCGACAAG 595560 33 100.0 35 ................................. CAGGCCGCACCGAACCTGCAATGCGATGCGTTGGA 595628 33 100.0 34 ................................. CGTGACGAAATCGGCCAGAACATCGCGAAGGGGT 595695 33 100.0 35 ................................. AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT 595763 33 100.0 33 ................................. TACGCGTCAATGTACGGCAAAGGCGACGTGTAT 595829 33 97.0 34 ...................A............. TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT 595896 33 100.0 34 ................................. GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG 595963 33 97.0 36 ....A............................ CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC 596032 33 84.8 0 .............T...........G..CCT.. | ========== ====== ====== ====== ================================= ==================================== ================== 25 33 99.0 34 GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Left flank : AAGCCAAGGCCGAGTATGGCTTGGCCAATGAGGTCATAGAGTCTGAATGGTTTAAGTAGCTTGGGCTGCCAACCTTACGAACTGTTGAGGCAGTCGAAAAAGGAGATGGCACTATTGCGTGTAGTTTGTTCCGTTGCAATTGAGGTATGCGCAAAGGGTCGAGCATCGTGGTGGGCGGTGACATTTGCCTGTTGATGGGATGGCAATGCCTGAACTGGCTGCGTCGAGGGGAGGACGGTGATGTCGCCGATATCGTGCCATGTGGCCGGTGCGACCTTAAAGTTCTCATGAATTACTCGTCCTTTCGCACTGTAGAATGACGTGGAGATGAGGGTTATTTTTGTCTCTCTGGTTGCTTGATGACTTCATAGTGGCTAGTGCGCTGGTGTTTTTGACTTTTACGGACGGTGCCCAAAACGTCAACGACGATCTGCGATACAATCAGTGTTGAAAATGGATGATTTTGCCCATATCGTGGGCGAAGATGTCCATTTTCGCGG # Right flank : TGCCGGATTAATACGTTGGTTGATGTCGGTATCGTCCCATCTATCCTTGATATAAGGATTTGTGATGGGGGTAACGATACCAGCTTGGTTCCACTGGTCAACGTATGAGTATCGGATACGGTTCGGTGCGTATGTTTCGATCATTCGTTGATAGTAATCGCGTTCATTAAGAAGCAGGTCCACCAGATATCCGGGTTCGTTTGGGAAATTCTTTAGTGCGCGAGTATAAAGATTGTGGTGTTCGTCCAATACCAGAGCTGGAACGGAATCTAAGCGCAAGAGTTCTTTAAACATGACGAGTCGCCCAACTCGACCGTTACCGTCGGAGAATGGGTGCGTGGATTCGAACATCCAATGTGCTTTTGCGATTGCAAAAGGATCATCTTCCAATTGTGAGTACAAGCTGAATACCTGTTTCATGGCAAGAGGCACATCTGCGGGGAGTACCGTATGAATTCCCTCAAGTTGGCTGATGACGTTGGGCACTATTTTGTATCCGC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.50,-8.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //