Array 1 64316-64770 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV799997.1 Neisseria sp. HMSC068C04 Scaffold448, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 64316 36 100.0 34 .................................... TTTGGTTTCAGTTTCGGCATCAAGATTCTTTTTG 64386 36 100.0 31 .................................... GTATCATAGCCTTCCAAACCTTTAGCGAAGA 64453 36 100.0 34 .................................... TCATGCCCTCGGTGTATTGCACACCATCGTCAGC 64523 36 100.0 35 .................................... ATTTCAATACGACAGTTTTGCCGTATGCCCAGTGT 64594 36 100.0 35 .................................... TTCGATGTCCTTACCGAATTTGGTTTGGAATTTGG 64665 36 97.2 34 ..........A......................... TTCTTGTGAACCAATAGAGCAGCACAGATAGTTT 64735 36 94.4 0 ...............T.................G.. | ========== ====== ====== ====== ==================================== =================================== ================== 7 36 98.8 34 CTCTGAAAAACCTCCCCACCACATGGGGATTAAAAC # Left flank : TTTTGCTTTGACCTACATCACAAACCATGATTGAACTTTTCAGACGGCCTCTTTATCATTTATTCATTTTAATTTATTGAAGCATAATGATTTTATCCACACGCAACCAAAGACGGCCATTCTTGGTCGCTTTCCCCGCATATTAAAATAAGAACAGAAAACCAATGTATCAAAATTACATACTTAAAATAAAACAAAGGCCGTCTGAAAATATTTTTCAGACAGCCTCATTTTCTTAAATATACTTCTCAAGCAATAACTTGAATGTTAGAATGACAACGTTTTCCCGACAGGAAACAACAGGTTTTTCAGGGTAAGTCAGACTTGGATTGCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAACCTCCCCACCACATGGGGATTAAAACTTTGCTACTTCAACCCAGTTCTCGAAAACTTCTTT # Right flank : CTAGTCGCCGTTGAGGGCATTAAAGCCCACTTGAATCTCTGAAAAACCTCCCCACCACATGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACCTCCCCACCACATGGGGATTAAAACTTTATAGGTGCACGGAAGTCAGAGCTATCTCTTTCTCTGAAAAACCTCCCCACCACATGGGGATTAAGACACCATCTTAGCGGTATCACCCACTACCTTGGCCTCTGAAAAACCTCCTCTCCACTCGGGGATCTTGGCAAGGCAAAAAAGGCCGTCTGAAAATATTTTTCAGACGGCCTTTTTTTATGTATGCCTTTTATTGGCTGATGTCTTCCAGCGTACGGCCTTTGGTTTCTTCACCCAATACCAAGATTACCGCCACAATCAGCAGCATAACCAGCGCAAACATCATAAAGATATTGCCG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTGAAAAACCTCCCCACCACATGGGGATTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 60502-60752 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800003.1 Neisseria sp. HMSC068C04 Scaffold488, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 60502 37 100.0 33 ..................................... CTTTCAAAACCTTCACTTCTACCGTTAACGAAA 60572 37 100.0 34 ..................................... AAGTTGGTACTTTGGACATCAGCGATTTCTGATA 60643 37 100.0 36 ..................................... AACCTCAAACACGCGGTATCCGCAAGACCATGCGAG 60716 37 89.2 0 C.................................NNN | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 97.3 35 AGTCTTAATCCCCATGTGGTGGGGAGGTTTTTCAGAG # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTATCCCCGAGTGGTGGGGAGGTTTTTCAGAGAGCTTGAAGCTGTCTGAAGACAACCCAGAATTCATGTCTTAATCCCCATGTGGTGGGGAGGTTTTTCAGAGACCAGTGAAAACAGAGGACTACGCTTTACCTTGAAGTCTTAATCCCCATGTGGTGGGGAGGTTTTTCAGAGGCTTTAACGCTTTAGACGGCACATATGCTGATAAAGTCTTAATCCCCATGTGGTGGGGAGGTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAATCCCCATGTGGTGGGGAGGTTTTTCAGAGTATCAGATGGTGGCGGAAGTGTAACGTTACC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTAAAAGGCCGTCTGAAAGTTTCAGACGGCCTTGCTGTCTGCTTTAGTTGTTTTGTAAAGCTTTTAGTAGCTCTTTGATGCTTTTCTCGCGTTTACTTGTTAACCAGTTGGGCTGGTGTTTCTGTAAAACGGGTTTTAGAGCCAGTTGCTCGGTAATTTGCTGCCTGTCTTGGCTGCTCAAGCGTCCGTCCGTTGCGGCCTGCTTCAAATCGGTCTCCAATTCTTTAAAGTATTGGCTGCTTTCGTTGTCGCTGCCGCTATATTTTTTTCTCCCTGTATGATTTTGAGCCATTTGGCAATGAGTTGCTCATGCGGCGACAAGGCAGCCGTTTGCGCTTGTTCGGCAATGGCTAAGGCTGCTTCTTTTTTGTTGCCGACGTATTTTTGATATGGGTTATATG # Questionable array : NO Score: 2.72 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCTTAATCCCCATGTGGTGGGGAGGTTTTTCAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 2 62967-63222 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800003.1 Neisseria sp. HMSC068C04 Scaffold488, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================================ ================== 62967 33 100.0 37 ................................. GAGTGAGCAAACTCTGATGAACGGGCTCTTATCTGAG 63037 33 97.0 48 ...........A..................... GAGCTGCACGGCAGCGCGCTATCAAATCAATAAAGAGCGGTGAATCAC 63118 33 100.0 39 ................................. GAGGTTAAACGTGTTAAGTACCCGATTGTCCAGTCAATC 63190 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================================ ================== 4 33 99.2 42 GTCTTAATCCCCATGTGGTGGGGAGGTTTTTCA # Left flank : CCGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTATCCCCGAGTGGTGGGGAGGTTTTTCAGAGGGTTGGTATAGTCGTTTATCTGGTATTGGTTACGGGTCTTAATCCCCATGTGGTGGGGAGGTTTTTCAGAGTGCCAACGTTAGAGAAATTGATGCATTAATCGAAGTCTTAATCCCCATGTGGTGGGGAGGTTTTTCAGAGCGTACTATTTGCAAGATTAAGGCTGGTGAATCACGTCTTAATCCCCATGTGGTGGGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATCCCCATGTGGTGGGGAGGTTTTTCAGAGTGAATCCGTCGAAGTCGAAGAGTTCGAAGTAG # Right flank : | # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCCCATGTGGTGGGGAGGTTTTTCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 85305-85071 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV799929.1 Neisseria sp. HMSC068C04 Scaffold57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 85304 36 86.1 30 NNNNN............................... CAGTTCGCCGTTCACGCCAACGCGGTTTTG 85238 36 100.0 30 .................................... GCATGTAACCGTTAAATAAGCCTGTTTGCT 85172 36 100.0 30 .................................... AACAAGACAGACAGCCCGTAAGAGTATTGC 85106 36 86.1 0 ...............................NNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.1 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : CTCATTTCGCAGTGCTACAATTAATGCTTCAAGACTTCGTCTATCAGCATGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATTGATAAAAATAGTTTATGGCTTAATTCATGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCGAGTACCTGACGAACTACACCCGCGCCCCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCGCCCAAATATTATTGGTGCGCCCGAATTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCTTCTTTATATGATTTGTAATAAACATAGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTTATTTAATGCACGCATTATAACCTAGCTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTTCAAAGCCCAGCGTTCCGCCCTCGGATTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATCTCCACTCAAGCCAGCCGCTGTCCAAACACGTTGTAGCTCCCTTTCTCA # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 2 85629-85395 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV799929.1 Neisseria sp. HMSC068C04 Scaffold57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 85628 36 86.1 30 NNNNN............................... TGATAAAAATAGTTTATGGCTTAATTCATG 85562 36 100.0 30 .................................... CGAGTACCTGACGAACTACACCCGCGCCCC 85496 36 100.0 30 .................................... TCGCCCAAATATTATTGGTGCGCCCGAATT 85430 36 86.1 0 ...............................NNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 93.1 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TCGCAGTGCTACAATCATCTTACTGACAGCATCCTCCGAATCACGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATATACGCGCGCGCCCAAGATGTAGCCTTTATGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGAACGTGTTGAAGCTTGCGGCGGTAATCGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTAAAGAAGTAGCAGGCGTTTGTTGTACTGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGAGGTGTACACCAATGGTCTGCCGGTTGGCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTAATGCTTCAAGACTTCGTCTATCAGCATGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATCAGTTCGCCGTTCACGCCAACGCGGTTTTGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGCATGTAACCGTTAAATAAGCCTGTTTGCTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAACAAGACAGACAGCCCGTAAGAGTATTGCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCCTTCTTTATATGATTTGTAATAAACATAGGTTGTAGCTCCCTTTCTCA # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [6-6] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 3 86084-85784 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV799929.1 Neisseria sp. HMSC068C04 Scaffold57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 86083 36 100.0 30 .................................... ATACGCGCGCGCCCAAGATGTAGCCTTTAT 86017 36 100.0 30 .................................... GAACGTGTTGAAGCTTGCGGCGGTAATCGT 85951 36 100.0 30 .................................... TAAAGAAGTAGCAGGCGTTTGTTGTACTGT 85885 36 100.0 30 .................................... GAGGTGTACACCAATGGTCTGCCGGTTGGC 85819 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : ATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCAAATTAATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTATTTGGATAGCCCCTTTCTCATTTCGCAGTGCTACAATCTTGAAAGATATTGGGCTTGATGCAAAAGCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTCTTGTAGCAGTTCATCTTCGGCAGGAGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATCATCTTACTGACAGCATCCTCCGAATCACG # Right flank : TAATGCTTCAAGACTTCGTCTATCAGCATGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATTGATAAAAATAGTTTATGGCTTAATTCATGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCGAGTACCTGACGAACTACACCCGCGCCCCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCGCCCAAATATTATTGGTGCGCCCGAATTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 4 86408-86241 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV799929.1 Neisseria sp. HMSC068C04 Scaffold57, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 86407 35 86.1 30 TGGA....-........................... CTTGAAAGATATTGGGCTTGATGCAAAAGC 86342 36 100.0 30 .................................... TTCTTGTAGCAGTTCATCTTCGGCAGGAGT 86276 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 91.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GACATTAGGTTCCAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGTAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCAAATTAATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTATT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATCATCTTACTGACAGCATCCTCCGAATCACGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATATACGCGCGCGCCCAAGATGTAGCCTTTATGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGAACGTGTTGAAGCTTGCGGCGGTAATCGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTAAAGAAGTAGCAGGCGTTTGTTGTACTGTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATGAGGTGTACACCAATGGTCTGCCGGTTGGCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTAATGCTTCAAGACTTCGTCTATCAGCATGGTTGTAGCTCCCT # Questionable array : NO Score: 4.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 1-235 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800014.1 Neisseria sp. HMSC068C04 Scaffold766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1 32 97.0 36 -................................ AACATGGAACACGGCGTATGTGTCCTACCTATGGCA 69 33 97.0 34 G................................ CAAAAAGTAGTAAATCCATATCAAGCCCCTGCCG 136 33 100.0 34 ................................. ATCCAACAGCGGAACAGCAATAGCAGGCGGAATC 203 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 98.5 35 TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : | # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGTTTTCGTACTTGTTGCTACTTAGTTCGATAAATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCAAATCCCAAGTAGTAGGATTTAAATAAAGTGTTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCTTGTTTAAACATTCGATGAGACTGGCTAACCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACACGTACACCGACATTCAGGGGTTGATATTATTCTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 336-633 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800014.1 Neisseria sp. HMSC068C04 Scaffold766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 336 33 97.0 33 A................................ GTTTTCGTACTTGTTGCTACTTAGTTCGATAAA 402 33 100.0 33 ................................. CAAATCCCAAGTAGTAGGATTTAAATAAAGTGT 468 33 100.0 33 ................................. AGCTTGTTTAAACATTCGATGAGACTGGCTAAC 534 33 97.0 34 C................................ ACGTACACCGACATTCAGGGGTTGATATTATTCT 601 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= ================================== ================== 5 33 98.2 34 TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAACATGGAACACGGCGTATGTGTCCTACCTATGGCAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCAAAAAGTAGTAAATCCATATCAAGCCCCTGCCGTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATCCAACAGCGGAACAGCAATAGCAGGCGGAATCTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAATGTAGCGGCGGTCAAGCCTGCCATCATTTCACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCCTGTTTTGAATAAAAAAGACCCTATTTCGCACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAAGAAGTGCGTCTGGCTAAGGTTGAGTATCGGACCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGCCGATAGCAAGACATCGAGAGATGGGGGAAATCCCAGCCGCC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 732-959 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800014.1 Neisseria sp. HMSC068C04 Scaffold766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 732 32 93.8 33 NN.............................. AATGTAGCGGCGGTCAAGCCTGCCATCATTTCA 797 32 100.0 34 ................................ AGCCTGTTTTGAATAAAAAAGACCCTATTTCGCA 863 32 100.0 33 ................................ AAGAAGTGCGTCTGGCTAAGGTTGAGTATCGGA 928 32 93.8 0 ..............................NN | ========== ====== ====== ====== ================================ ================================== ================== 4 32 96.9 34 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : AAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGTTTTCGTACTTGTTGCTACTTAGTTCGATAAATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCAAATCCCAAGTAGTAGGATTTAAATAAAGTGTTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCTTGTTTAAACATTCGATGAGACTGGCTAACCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACACGTACACCGACATTCAGGGGTTGATATTATTCTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGCCGATAGCAAGACATCGAGAGATGGGGGAAATCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTTGGCGCGCATATTGTTGACCCTGTTGCCGTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGCGCATGGCTCGCTGACGATTCCGGGACACCCGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTAATTCTCATATTCGCCTCGCAGAAGTGCGTTGAAACCAG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.70,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1057-1220 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800014.1 Neisseria sp. HMSC068C04 Scaffold766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 1057 33 97.0 33 N................................ GCCGATAGCAAGACATCGAGAGATGGGGGAAAT 1123 33 97.0 32 C................................ TTTGGCGCGCATATTGTTGACCCTGTTGCCGT 1188 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 3 33 98.0 33 GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GTGTTGAAACACGTACACCGACATTCAGGGGTTGATATTATTCTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAATGTAGCGGCGGTCAAGCCTGCCATCATTTCACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCCTGTTTTGAATAAAAAAGACCCTATTTCGCACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAAGAAGTGCGTCTGGCTAAGGTTGAGTATCGGACCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCGCGCATGGCTCGCTGACGATTCCGGGACACCCGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTAATTCTCATATTCGCCTCGCAGAAGTGCGTTGAAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTCATGCGCGCGCCGCAATGTTTGCTGATGTGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGTCTCTTGCCCTGTTGTCGTTACCGCCTGCATATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGC # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 1385-1617 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800014.1 Neisseria sp. HMSC068C04 Scaffold766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1385 33 100.0 36 ................................. CTAATTCTCATATTCGCCTCGCAGAAGTGCGTTGAA 1454 33 97.0 32 A................................ CTCATGCGCGCGCCGCAATGTTTGCTGATGTG 1519 33 97.0 33 C................................ GTCTCTTGCCCTGTTGTCGTTACCGCCTGCATA 1585 33 90.9 0 T..............................NN | ========== ====== ====== ====== ================================= ==================================== ================== 4 33 96.2 34 NCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GTGTTGAAACAAGAAGTGCGTCTGGCTAAGGTTGAGTATCGGACCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGCCGATAGCAAGACATCGAGAGATGGGGGAAATCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTTGGCGCGCATATTGTTGACCCTGTTGCCGTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGCGCATGGCTCGCTGACGATTCCGGGACACCCGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATCATCTTTGAAGATGCGCACAATAAAAGATTTTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAATTCATGGGGCGGAATTGTATTCTTCCTTTAGACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCACTGCCGTTTGCCTGTTTTGATACGGTAAGCACTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATAGACGCGGACGTATTTGGACGATTCACGGGAACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT # Questionable array : NO Score: 5.36 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : NCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 1715-2014 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800014.1 Neisseria sp. HMSC068C04 Scaffold766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1715 32 96.9 34 N............................... ATCATCTTTGAAGATGCGCACAATAAAAGATTTT 1781 32 100.0 35 ................................ AATTCATGGGGCGGAATTGTATTCTTCCTTTAGAC 1848 32 100.0 36 ................................ CACTGCCGTTTGCCTGTTTTGATACGGTAAGCACTC 1916 32 100.0 35 ................................ ATAGACGCGGACGTATTTGGACGATTCACGGGAAC 1983 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 99.4 35 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGAAACCGCGCATGGCTCGCTGACGATTCCGGGACACCCGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTAATTCTCATATTCGCCTCGCAGAAGTGCGTTGAAACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTCATGCGCGCGCCGCAATGTTTGCTGATGTGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGTCTCTTGCCCTGTTGTCGTTACCGCCTGCATATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAACACACAGCCGCCTGAAGGCGGCTGGGCCTGCCATGCTGACGGCGTGGGGCGCGGCATTGTTTCAACACACAGCCGCCTGAAGGCGGCTGGAACCGCAATCGGCGCGGCGGCAATGGAGAACCTGGTTTCAACACACAGCCGCCTGAAGGCGGCTGGCGAAGAGTTGACCATCATCGGCTCGAACGCAATGTTTCAACACACAGCCGCCTGAAGGCGGCTGGTTGCCAATTACACGCACGCGAACACAAACCCAATGTTTCAACACACAGCCGCCTGAAGGCGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCC # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.50,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 2343-2114 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800014.1 Neisseria sp. HMSC068C04 Scaffold766, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 2342 33 97.0 32 A................................ ATTGCGTTCGAGCCGATGATGGTCAACTCTTC 2277 33 97.0 33 G................................ CAGGTTCTCCATTGCCGCCGCGCCGATTGCGGT 2211 33 100.0 32 ................................. AATGCCGCGCCCCACGCCGTCAGCATGGCAGG 2146 33 93.9 0 C...............................N | ========== ====== ====== ====== ================================= ================================= ================== 4 33 97.0 33 TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GGTATCAGATGGGTGCGCGGATGGGACTTAGCGTCCACTGCGTTTCAACACACAGCCGCCTGAAGGCGGCTGGGATGGAATACAAGCGAAAGGCCGTCTGAAATGCTGTTTCAACACACAGCCGCCTGAAGGCGGCTGGGAACGTCGCGGCAGTTTTGACAGCTTCTTGTATGTTTCAACACACAGCCGCCTGAAGGCGGCTGGCAAGGTTTGGGCAACCGCCAACGCTTTCACGTCCGCGTTTCAACACACAGCCGCCTGAAGGCGGCTGGCAAGGTGGAACGAGCGGTTCGGGCGGTCAAGGTGGTTTCAACACACAGCCGCCTGAAGGCGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATTGGGTTTGTGTTCGCGTGCGTGTAATTGGCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCAACACACAGCCGCCTGAAGGCGGCTGGGTTCCCGTGAATCGTCCAAATACGTCCGCGTCTATGTTTCAACACACAGCCGCCTGAAGGCGGCTGGGAGTGCTTACCGTATCAAAACAGGCAAACGGCAGTGGTTTCAACACACAGCCGCCTGAAGGCGGCTGGGTCTAAAGGAAGAATACAATTCCGCCCCATGAATTGTTTCAACACACAGCCGCCTGAAGGCGGCTGGAAAATCTTTTATTGTGCGCATCTTCAAAGATGATGTTTCAACACACAGCCGCCTGAAGGCGGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT # Questionable array : NO Score: 5.40 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 2504-2939 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800014.1 Neisseria sp. HMSC068C04 Scaffold766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 2504 33 93.9 33 NN............................... CACCTTGACCGCCCGAACCGCTCGTTCCACCTT 2570 33 97.0 35 G................................ GCGGACGTGAAAGCGTTGGCGGTTGCCCAAACCTT 2638 33 97.0 32 G................................ ATACAAGAAGCTGTCAAAACTGCCGCGACGTT 2703 33 100.0 33 ................................. AGCATTTCAGACGGCCTTTCGCTTGTATTCCAT 2769 33 100.0 38 ................................. GCAGTGGACGCTAAGTCCCATCCGCGCACCCATCTGAT 2840 33 97.0 34 A................................ AAGAGTAATAATGCAGGCCGTCTGAAATGACGGC 2907 33 97.0 0 ................................N | ========== ====== ====== ====== ================================= ====================================== ================== 7 33 97.4 34 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAACACACAGCCGCCTGAAGGCGGCTGGGCCTGCCATGCTGACGGCGTGGGGCGCGGCATTGTTTCAACACACAGCCGCCTGAAGGCGGCTGGAACCGCAATCGGCGCGGCGGCAATGGAGAACCTGGTTTCAACACACAGCCGCCTGAAGGCGGCTGGCGAAGAGTTGACCATCATCGGCTCGAACGCAATGTTTCAACACACAGCCGCCTGAAGGCGGCTGGTTGCCAATTACACGCACGCGAACACAAACCCAATGTTTCAACACACAGCCGCCTGAAGGCGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGCGTGTTGCCTCTCAGTTTGGTAATGATGCCGAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGCGATGCTCTAAATCAGATTTAATATGACGCTCAAAGGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGCTCCCTAACCGATGCGGTGGTCTTTGTACTCACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTAGACAAGCTGCCACCACCGCCGGAGCCGTTGAAG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 3037-3205 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800014.1 Neisseria sp. HMSC068C04 Scaffold766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 3037 33 93.9 33 NN............................... GCGTGTTGCCTCTCAGTTTGGTAATGATGCCGA 3103 33 100.0 37 ................................. GCGATGCTCTAAATCAGATTTAATATGACGCTCAAAG 3173 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 3 33 98.0 36 GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : CACCTTGACCGCCCGAACCGCTCGTTCCACCTTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGCGGACGTGAAAGCGTTGGCGGTTGCCCAAACCTTGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATACAAGAAGCTGTCAAAACTGCCGCGACGTTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGCATTTCAGACGGCCTTTCGCTTGTATTCCATCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGCAGTGGACGCTAAGTCCCATCCGCGCACCCATCTGATACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAAGAGTAATAATGCAGGCCGTCTGAAATGACGGCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGCTCCCTAACCGATGCGGTGGTCTTTGTACTCACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTAGACAAGCTGCCACCACCGCCGGAGCCGTTGAAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTATAGAATTGGAATTGATTGATGATTACGGCATGGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCAGATAACTCTACCGTTGATGGAAAAGTCGTTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTACGCTGATCCGCCCTATTGGCAAACTGCTGGCTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTGGTGTTGGCCGTTTCACTCGGCGCATTGGCGGCC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.30,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.42 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 10 3370-3801 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800014.1 Neisseria sp. HMSC068C04 Scaffold766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 3370 33 93.9 35 NN............................... TTAGACAAGCTGCCACCACCGCCGGAGCCGTTGAA 3438 33 97.0 34 G................................ TATAGAATTGGAATTGATTGATGATTACGGCATG 3505 33 97.0 32 G................................ CAGATAACTCTACCGTTGATGGAAAAGTCGTT 3570 33 100.0 33 ................................. TACGCTGATCCGCCCTATTGGCAAACTGCTGGC 3636 33 97.0 34 T................................ CTGGTGTTGGCCGTTTCACTCGGCGCATTGGCGG 3703 33 100.0 33 ................................. CGATGATTATGTCGGACTTCTTCCCAGTCACGG 3769 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 7 33 97.8 34 CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : AACAAGAGTAATAATGCAGGCCGTCTGAAATGACGGCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGCGTGTTGCCTCTCAGTTTGGTAATGATGCCGAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGCGATGCTCTAAATCAGATTTAATATGACGCTCAAAGGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGCTCCCTAACCGATGCGGTGGTCTTTGTACTCACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCGAAATCGGCACTCAAAGAGCTACTCGGCACGGACCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCAGTTTGCGAGCAGGGCAATGAGCCAGCCGATAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTTCCAACGAATCGCATCCTTTCAAAATTGAAGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTGCGCCGCTCCAACACCGACGGATGCGCCCAAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCTTAATGGCCTCCAGCATCGGATATGCCTGGTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCATTCACCTCCTTTCCATACAGTAAGGTCATACC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 11 4029-4717 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800014.1 Neisseria sp. HMSC068C04 Scaffold766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 4029 33 93.9 34 G............A................... TTTCCAACGAATCGCATCCTTTCAAAATTGAAGA 4096 33 100.0 35 ................................. CTTGCGCCGCTCCAACACCGACGGATGCGCCCAAG 4164 33 97.0 35 C................................ TGCCTTAATGGCCTCCAGCATCGGATATGCCTGGT 4232 33 97.0 33 C................................ ATCATTCACCTCCTTTCCATACAGTAAGGTCAT 4298 33 100.0 34 ................................. AAAGTATCCTTCTAATGCGCAAATCAGGCCGTCA 4365 33 100.0 35 ................................. ATGTAATCGTCGTACATCGCCATTATTTAGCCTCC 4433 33 97.0 33 T................................ GGGTCAGTCGGCAAATGAACATGAAGCCGCACA 4499 33 97.0 33 G................................ CGAGCTAGGGATAAGAGGGTTGACCGGCAGGCG 4565 33 97.0 20 G................................ AACGAAGCCGAATTTAAAGG Deletion [4619] 4618 32 78.8 34 CA....G.TG..-..C................. TCCAACAACTACGAACTTTATGCCGACCTATCCT A,T [4634,4636] 4686 32 75.8 0 GT..........T...-.A....A....C...T | ========== ====== ====== ====== ================================= =================================== ================== 11 33 94.0 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTTGAAACCAGATAACTCTACCGTTGATGGAAAAGTCGTTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTACGCTGATCCGCCCTATTGGCAAACTGCTGGCTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCTGGTGTTGGCCGTTTCACTCGGCGCATTGGCGGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGATGATTATGTCGGACTTCTTCCCAGTCACGGCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCGAAATCGGCACTCAAAGAGCTACTCGGCACGGACCAGCCGCCTTCAGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCAGTTTGCGAGCAGGGCAATGAGCCAGCCGATA # Right flank : TATCGTCCAAGCGGGCCACTCTTCTTTTGATCCTTCGCTTTCTGAGGTTTTAGTGAAAGCAATAGAGGATATTAGAAGCGAGTTATAAAGGTTAATAAGTAAAAAAATGCCATCTGAAAAGTTTCAGACGGCATTTTTTCTATTTATATATTAAATTTAATATCATATTATCATTGCATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTGGAATGCGCCGGCGTCTTCGGTTTCTGTACCCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATTAAATTCCTTAGTTAACGGATAACTTAGCTTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGATGGTCATTTCTTCGGGGTCTTTGCCTGTGTATCCAGCCGCCTTCAGGCGGCTG # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:-0.08, 8:1, 9:0.45, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 12 4997-5293 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800014.1 Neisseria sp. HMSC068C04 Scaffold766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 4997 33 97.0 34 N................................ TTGGAATGCGCCGGCGTCTTCGGTTTCTGTACCC 5064 33 97.0 32 C................................ ATTAAATTCCTTAGTTAACGGATAACTTAGCT 5129 33 100.0 33 ................................. GATGGTCATTTCTTCGGGGTCTTTGCCTGTGTA 5195 33 100.0 33 ................................. ATTACTCTCTCCTAAAAAGGGACGTCATCGTTG 5261 33 97.0 0 A................................ | ========== ====== ====== ====== ================================= ================================== ================== 5 33 98.2 33 TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : CAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGAGCTAGGGATAAGAGGGTTGACCGGCAGGCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACGAAGCCGAATTTAAAGGCACAGCGGTGTTGGCCAGTGCTGTGTGTTGAAACTCCAACAACTACGAACTTTATGCCGACCTATCCTGTCAGCCGCCTTTGGGGACTGTATGTTCAAATATCGTCCAAGCGGGCCACTCTTCTTTTGATCCTTCGCTTTCTGAGGTTTTAGTGAAAGCAATAGAGGATATTAGAAGCGAGTTATAAAGGTTAATAAGTAAAAAAATGCCATCTGAAAAGTTTCAGACGGCATTTTTTCTATTTATATATTAAATTTAATATCATATTATCATTGCATGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CAGACGAATGAATTAGCAACAGATTATGTTGTTTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTGCTTTTAGTACAGGTGGAGCTTGTCCGCAAGACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGTGAGTAACCTATTATCCTAAAGGAGATAATCATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTATTTCTCCTAGATTTTCACCTGATAAAGAACAACCAGCCGCCTTCAGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCAA # Questionable array : NO Score: 5.97 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 13 5458-5688 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800014.1 Neisseria sp. HMSC068C04 Scaffold766, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 5458 33 97.0 32 N................................ TGCTTTTAGTACAGGTGGAGCTTGTCCGCAAG 5523 33 100.0 34 ................................. AGTGAGTAACCTATTATCCTAAAGGAGATAATCA 5590 33 97.0 33 T................................ TATTTCTCCTAGATTTTCACCTGATAAAGAACA 5656 33 90.9 0 ..............................NNN | ========== ====== ====== ====== ================================= ================================== ================== 4 33 96.2 33 ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACTTGGAATGCGCCGGCGTCTTCGGTTTCTGTACCCCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATTAAATTCCTTAGTTAACGGATAACTTAGCTTCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACGATGGTCATTTCTTCGGGGTCTTTGCCTGTGTATCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATTACTCTCTCCTAAAAAGGGACGTCATCGTTGACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAGACGAATGAATTAGCAACAGATTATGTTGTTTCCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTTCAACACACAGCCGCCTGAAGGCGGCTGGCCCCAACGTCGAATTTATCGAACTGGACAAACTCGTTTCAACACACAGCCGCCTGAAGGCGGCTGGTTCCTGAGATTTTCCGCCCATAACTAAAACTGGAGTTTCAACACACAGCCGCCTGAAGGCGGCTGGAGCCTCTCTCAAAAGCCTTGCTCCATCAGGTTTCGCAGCCCCAATTTCGCTAAGCTCCCAAGAAAAGCGCGATCGCGAGTATAACACAGCCTTTTCTGTTACACCCGAATTCGCAATATCCTGATTGTTAAAGAACAATCCAAATTCGCCACCCCTGCCGCATTTTCATGAGAACCGCAGGTTGGCGATTCACACAATCAACGTATCCTTAAACACATCCACCGCCGGTTTTGCGCCG # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 14 5951-5786 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV800014.1 Neisseria sp. HMSC068C04 Scaffold766, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 5950 33 100.0 33 ................................. TCCAGTTTTAGTTATGGGCGGAAAATCTCAGGA 5884 33 97.0 33 A................................ GAGTTTGTCCAGTTCGATAAATTCGACGTTGGG 5818 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= ================================= ================== 3 33 98.0 34 TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTAGAAGACGCGGAAGGGCAGGCAAGGCTGCGGCGCGTGGCCAAATTGTGTTTGGACTACGGCGTGCGCGTGCAATATTCGGTGTTCGAATGCGACATTGCACCTGATCAGTGGGTTGTTTTAAAAGATAAACTTTTGAAAACCTACAACCCCGAAACCGACAGTCTGCGCTTTTACCATTTAGGCAGCAAATGGCGGCGAAAAGTGGAACACCACGGCGCAAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGGTGGCGAATTTGGATTGTTCTTTAACAATCAGGATATTGCGAATTCGGGTGTAACAGAAAAGGCTGTGTTATACTCGCGATCGCGCTTTTCTTGGGAGCTTAGCGAAATTGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACACAGCCGCCTGAAGGCGGCTGGTTGTTCTTTATCAGGTGAAAATCTAGGAGAAATAGTTTCAACACACAGCCGCCTGAAGGCGGCTGGATGATTATCTCCTTTAGGATAATAGGTTACTCACTGTTTCAACACACAGCCGCCTGAAGGCGGCTGGTCTTGCGGACAAGCTCCACCTGTACTAAAAGCAGTTTCAACACACAGCCGCCTGAAGGCGGCTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCAACACACAGCCGCCTGAAGGCGGCTGGGAAACAACATAATCTGTTGCTAATTCATTCGTCTGTTTCAAC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 46087-46259 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV799965.1 Neisseria sp. HMSC068C04 Scaffold131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 46087 36 100.0 33 .................................... GCAATTTCAGGCGTGATGTCGCTGTCGTTTTGG 46156 36 100.0 32 .................................... TTGGTGTATGGTGTTTGTAATCGGTCGTAGAT 46224 36 91.7 0 .................................NNN | ========== ====== ====== ====== ==================================== ================================= ================== 3 36 97.2 33 GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : GGCAAGAAAGAATGGAGGAGCAACCAAACAAGATCATAGGCAACCAAGCACACGACAAACTCTATCAAGAATGGAAGGCAGCCTTGCAAACCGCCGCAGAAAGTCCCGATTTGAGCGCAGAGCAGAAAGCCGAAATCGCCGTTGCGTTTGCCGTCAAAAAGATGATGACAAAATACGCAAAATGGCTGACCGACAAGCGCGGAAAAGATCTGAAACCTATCTTGGCGAAGCTGCGCGGCGAATAGATTTTCGTCTTTGTCTGAACCCGAATTTTTCAGACGGCCTAAAGCCGTAAAACGGTTAAAAAGCGTTGTCGAATACGGAGTACACGGCTATAATCTGCATCACAAGTTTTCCGACGGATAGCGAAAAGTCTGTCTTTCGGCTGCTCTTTTCAGTTAACATTTCGTTAATTAATGTCTTTGTTTGTTAAGAGAAAATGCTAACGTTTCTTAACTATGCAGAGCTTTGAAAATAATGAGATTTTTTAATTGAGTGCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGACTTGCCCCACTAATCGGGGATTAAGACTTGTTTGAATGTCTTCATTCTCTTTCCTTTCGTTGTCGGAAGACTTGCCCCACTAATCGGGGATTAAGACGTTAGTAATAGCACTCAGGTCTTCAGCTTCAGAAGTCGGAAGACTTGCCCCACTAATCGGGGATTAAGACGAAACCAGTGTTGGTCAGACCTACCCAACCAATAGGTCGGAAGACTTGCCCCACTAATCGGGGATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACTTGCCCCACTAATCGGGGATTAAGACTTTGTTGTCAATTTGAATACGCATTTTTGTTTCC # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 46758-46934 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV799965.1 Neisseria sp. HMSC068C04 Scaffold131, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 46758 37 100.0 32 ..................................... GTCAGATTTGTCGGCATTAGAAAACTGATTTC 46827 37 100.0 34 ..................................... TGAACATATCGCACCCTTTCCTTTTCTTCTCGCA 46898 37 91.9 0 ..................................NNN | ========== ====== ====== ====== ===================================== ================================== ================== 3 37 97.3 34 CGTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGACTTGCCCCACTAATCGGGGATTAAGACTTGTTTGAATGTCTTCATTCTCTTTCCTTTCGTTGTCGGAAGACTTGCCCCACTAATCGGGGATTAAGACGTTAGTAATAGCACTCAGGTCTTCAGCTTCAGAAGTCGGAAGACTTGCCCCACTAATCGGGGATTAAGACGAAACCAGTGTTGGTCAGACCTACCCAACCAATAGGTCGGAAGACTTGCCCCACTAATCGGGGATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGACTTGCCCCACTAATCGGGGATTAAGACTTTGTTGTCAATTTGAATACGCATTTTTGTTTC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAGACTTGCCCCACTAATCGGGGATTAAGACCTGACTCAAGTACAGTCACTTTAGCCGTTTCCTTGTCGGAAGACTTGCCCCACTAATCGGGGATTAAGACGTCTTGAACTTGTAGTAAATCGGCCAGTCGTAGGTCGGAAGACTTGCCCTGCTAACGTTGGCGACGAGTGTTTTTCAGACGGCCTGAAAGCAAGGCCGTCTGAAACGGTTGGGTGGTTTATCCTGTCCCTCTTGCGGCAAACAGCAAAATAGCCTTGATATTGCATCAAGGCTATTTTTGTTTTTTGATCGGTTTTTTAGTTTTGGATACCAAGCAGGTTGGGAATGCCGGATGGGGCCGTCTGAAAATCAGGGTCTGCTGTCGGGTTGAGGCTTAAAAAATATCGGGTTGCCCATCCTT # Questionable array : NO Score: 2.53 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCGGAAGACTTGCCCCACTAATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA //