Array 1 28347-29026 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDRY01000054.1 Clostridium botulinum C/D str. DC5 Contig54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 28347 30 100.0 35 .............................. TTATTTGTAGCTATAACATCTTTGCCACCATCACA 28412 30 100.0 33 .............................. GGGTTTTAGGACCTGTAAGATATTGACTAACAA 28475 30 100.0 36 .............................. ACATTTTTGTGTTTTAAATATTAACTTGCAGTTCTA 28541 30 100.0 35 .............................. ACAATAATCTGATTAAATGCATGGCGTGTTTGTTT 28606 30 100.0 34 .............................. TCCCAATGTGCCAATTAGAGTTGGTATAAGTGGA 28670 30 100.0 36 .............................. AATGCTTTAAGTGCTGACAAAAGTGGATTTAAATAC 28736 30 100.0 35 .............................. AAGTTGAGAAAAGATATAAAAAATGGAATTCTTAC 28801 30 100.0 36 .............................. TGTGTGAATTTCCCTTTAAATATACATAAAGTCTTC 28867 30 100.0 34 .............................. TCATTCGTTGCTGCGAAAGTAGTATCTCCTTTCA 28931 30 100.0 36 .............................. TTTTCTTTTCTATTAATTCCATGATAATTCCTCCCT 28997 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 11 30 100.0 35 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : ATAAATAATGAGCCTTGGACTAATAAAATGGATATAGATTTATTAAAAAAGAGTATCAATGAGAATTTAATAAAGAAGATAAAAGTTATTCAGGATATAGATGAAATTTTAGAACATGATATGATAAAATCTATAAAATTAAAAAATAGAATGCCTATAGGATGTAAATACAAACAAATCAAACTATTGGGGAATAAATTTGAAATAGAAATTAAAGATGATGATATATCGCAATTCATGGCAAATATAGCTGTGGCAGTAGGAATTTTAGAAAAAAATTCTCTTGGTTATGGTTATTGTTTATACAAAAGTAAGTAAATTATTTTCCCAACCGATTTAAAAATTAAAACCAGCTATAATCCTTAATTTTACTGGTTTTGATATATGTTTAAGTTTCAAAAATGGCATTACTAAAATCGGTTGGGAAAAATATAATAAAAGTGTTTATTTTCAATAGCTTTAGGAGTATAATAAAAACAAGGAATGGCTATTTCCCTATG # Right flank : TTTTCTCTAATTAAAAATGGTCTTATGTCAATATCATGGACACGAAAAGTCAAACTTTTTTATGCTACACTTCTAGCTAATAATTCACATTGATCTGGAGTCATGTAATTAATAGAGGAGTGTAGTCTTTTTCTGTTATACCAACCTTCAATATATTTAAAGATAGCTCTATTAGCTTCTTGGAAGGTACGGTATGTATTTCTATATATTTCTTCTTTTTTTATTGATGAATGGAAAGATTCTATGCAAGCATTGTCATAGGGACAACCTTTTTTACTAAATGATTGTATAATATTAAAATCTTTGCATAGTGCTTTTAAATCATTACTAGTATATTGAGAGCCTAAATCGCTATGGAATATTAGTTGCTTATCTTTATCAGGAGATTGATTGTAATAAGCATTTTTCAAGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 1210-851 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDRY01000171.1 Clostridium botulinum C/D str. DC5 p2CbDC5_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 1209 29 100.0 36 ............................. GATTTTAATTTTAGTAATGTCGTTAGTATATGATTA 1144 29 96.6 36 .........A................... AAATCAAATGGAGGGACAAGGATGGTATGGTTGTTA 1079 29 100.0 40 ............................. TTTTCTAAGACAACGTTGAACCATAAATACCCGATATATC 1010 29 100.0 36 ............................. TCTACAATAAGACTAAATGCTATTCCAACAACTAAA 945 29 100.0 37 ............................. GAAGGTACTGGTGCTTTATATAAAGATACTGCTTTAT 879 29 96.6 0 ................C............ | ========== ====== ====== ====== ============================= ======================================== ================== 6 29 98.9 37 GTATTAATAGAACTATGTTAGTTATAAAT # Left flank : AGGTTAGTTTTAATCATTTACTAGCGTTAATGATATTAGCATAGGAGAAATATTTGATAATATTTTTGAAAGTGGTGATTTCATTGATTGGATATGAAAGCTTATATAATGAAGACTATTTGCAAATAGGAAAAGGGAAGTAGTTTAGAGTAAAAATGTACATAAATACTTATTTTAATATATATATACAAATATAGAAAAAATTTAACAATAATATTGAAAAATAATTCTTAAATTACATAATTATAGTATAATAATAAAATAGAAGGGAGATGAAGATAATGGAATTCAAAAAATTAGTATTAACATCAAAAATGGCTCATTTTAAAAATGGAATTAATGGAAAAAATCAAAATACTTTTAGAGTTCCTCCCATATCAACCATAGTTGGTATATTAAAAAACATCTATGGCAAAGACATTAAAGATTTTATATTTGGATACACCTGCAAATATGATGGTATTTTTAAAGATGATAGTCAGGCATAATATGTTCTATTT # Right flank : CATAGAAAAACCTTCTTGTAATATTTTTAGTTCTGTTAAGTTATATGAACATTGATTCCTCTCAACCTATTGAAATATAATAGATTTTTCACAAATATATTACCTCCCAGAAAGGAGAGAGAAATCAATGAACAAAGCTAATAAAGAAATCATTTGTTCTGGTTGTTGCAGCCATAATCTTTTTAGGTTTGGAAAAGACAAAGAAGGAATGATCACTTTCTTACATTCCCATAGTAGCACATATATATATTCACGACTTTAGTTCAATAATTAATTACTAAACATTTATTATAAGTATCATTGGTATTGTAACTTAATAGGTCATATAACAAAGATATATATTAATATATCTTGAATATATATTAATATATTGGTAAATAAAGGAGAGAAGATATGAGGAAAGTAACGAATATATTGACATCATTAAATTTGTTTATTTTTTCCATATTAATTTTAATACTATAATAGTGCATTTTAAATTGAATAATTTTACAGTTAAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATAGAACTATGTTAGTTATAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 29-841 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDRY01000163.1 Clostridium botulinum C/D str. DC5 Contig163, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 29 30 100.0 33 .............................. GGGTTTTAGGACCTGTAAGATATTGACTAACAA 92 30 100.0 36 .............................. ACATTTTTGTGTTTTAAATATTAACTTGCAGTTCTA 158 30 100.0 35 .............................. ACAATAATCTGATTAAATGCATGGCGTGTTTGTTT 223 30 100.0 34 .............................. TCCCAATGTGCCAATTAGAGTTGGTATAAGTGGA 287 30 100.0 36 .............................. AATGCTTTAAGTGCTGACAAAAGTGGATTTAAATAC 353 30 100.0 35 .............................. AAGTTGAGAAAAGATATAAAAAATGGAATTCTTAC 418 30 100.0 36 .............................. GAAGAAATTCCAGAAGAATAAATCGTGCCTATGGGG 484 30 100.0 36 .............................. AAACAAAAAGATATTAAGGAGGTTTCAAAAGGTACA 550 30 100.0 36 .............................. ATATGAATAAGCATATGAGAGGATGAAAATAAAATG 616 30 100.0 36 .............................. TGTGTGAATTTCCCTTTAAATATACATAAAGTCTTC 682 30 100.0 34 .............................. TCATTCGTTGCTGCGAAAGTAGTATCTCCTTTCA 746 30 100.0 36 .............................. TTTTCTTTTCTATTAATTCCATGATAATTCCTCCCT 812 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 13 30 100.0 35 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : TAGCTATAACATCTTTGCCACCATCACAG # Right flank : TTTTCTCTAATTAAAAATGGTCTTATGTCAATATCATGGACACGAAAAGTCAAACTTTTTTATGCTACACTTCTAGCTAATAATTCACATTGATCTGGAGTCATGTAATTAATAGAGGAGTGTAGTCTTTTTCTGTTATACCAACCTTCAATATATTTAAAGATAGCTCTATTAGCTTCTTGGAAGGTACGGTATGTATTTCTATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 8138-7310 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDRY01000174.1 Clostridium botulinum C/D str. DC5 p2CbDC5_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 8137 36 100.0 34 .................................... ATATAAATCTTATTTCCATCAAATACATATCTAG 8067 36 97.2 34 T................................... AATGCAAGTACTGTTTTGAGATGGCTACAGAAAT 7997 36 97.2 35 T................................... CATTAGTTATTGAAGAATTACCATCATTTCCACCT 7926 36 100.0 37 .................................... TATTTGAGTTGTTAGACTCTAATAAATTAAATGGATT 7853 36 100.0 37 .................................... ATAGATGAATTAGAGGATTTAACTTATGCAGTAGATA 7780 36 100.0 36 .................................... TTATCTAAATTGGGACTACACGAATCATGCACAAGG 7708 36 100.0 38 .................................... TATAAAAGATGTTGAAGCCTATAGAGCTAATAAAAAAG 7634 36 100.0 36 .................................... AAAAGCATTAGGACATACTGTTGTAAATTGCACTAC 7562 36 100.0 37 .................................... ATAGGAAACTTTGATAATGTAGTAAAAAACTAAGTAG 7489 36 100.0 37 .................................... ATAGGAAACTTTGATAATGTAGTAAAAAACTAAGTAG 7416 36 100.0 35 .................................... CTTCTAGTTCTTCTTTAGTATAGTCTTTACCTTCC 7345 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 12 36 99.5 36 GTAATAAAGATATTAAGCTCCATAGGAGATTGAAAC # Left flank : GCATTAATGAAAGAAATTGAATATATACCGTTTTTAATTAGATAAGATAGGAGAAAATGTGGTATGATGTATTTAGTTAGTTATGATATTGTTAATGATAAGAAAAGAACAAAACTTCATAAATTGTTGAAAAACTATGGTGTAAGAAATCAGTTCAGTGTTTTTGAATGTAATTTGGATGATAAAAAGTATGTTGAACTTGTATATAAGATTAACAATATTAAAGTAGAGGCAGGAGATAGTATAATGATTTATCCATTATGTTATTCTTGTAAATCAAAAATAGTAAGAAAAGGTTCATTTATTGAAATAGATGTAAAAAATATGATTTTTTAATGCGCCAAGCTTAGTGTTTGAAAAAGTACGTTGACATGGCGATGGCTTTAAATAGCCATTTGTAGATAGTTTTTTATAGTATTGGTATAAAATTTAAAATAATAATAGATACTTTGCGAATAATGCGGGTCTATGTTAGTGTTTGTGAGGGATAAAACGCCGGC # Right flank : GAAAGTAGCTAGTCTTGAATGGTTAGCTACTTTTTATGTAATAAAGATATTAAGTATAAGTGCTATTATGGGAATGCAAGAAAGTGATCATCTAAGGATATAAGAATTAGATTTATGTATAATACTATAATTACAAACATTTAAACTGGAGGTAATTATGATTATACAAATGAATATTAATTCTGAAATACAAATAGATAAGTTAGAGGATCTTCATAAATTAAATTTAATTATGGAGGAAAATAACTTGAAAGTAAATAAAAGTCAAATAGCTAGAGAACTTGGCGTTGATCCACGCACCGTAGGTAAATATTTAAATGGATATGTAAAACCTAATACTAGAAATCGTAAATCTAAAATAGACCATTTTGAACCTATTATCAAAAAACTTCTTGGTAAAGATTCTATTCAAATATTTTATTATAAACGGATTCTGTGGCAGTATCTTAGAGATAACTATGGATTAGATTGTGCTCAATCTTCTTTTAGAAGATATATCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAATAAAGATATTAAGCTCCATAGGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.90,-3.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA // Array 1 10154-12027 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDRY01000024.1 Clostridium botulinum C/D str. DC5 Contig24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 10154 30 100.0 36 .............................. TGATAAAAAATTACCGTATATTTATATAATAATAGA 10220 30 100.0 36 .............................. AGATGTCTCTAATACACTTCTATCGAGTAAAGTTCT 10286 30 100.0 36 .............................. GCTTCAAGGACATTAGTATCTACATTCCCATTATCG 10352 30 100.0 35 .............................. TAAGATACTAGATTTCCCTTATTCATTGCAGTTAA 10417 30 100.0 35 .............................. TCTATGGTTTTATCTTTATTTAGATACTCTTCTAT 10482 30 100.0 35 .............................. TTTGCACGTACTGGACATAAACAACATGAACAACA 10547 30 100.0 36 .............................. GAAACCAAAAGCCATCAATAGAAACTCACGCAATAC 10613 30 100.0 38 .............................. ATAAAGTGCTTTGAATTCTCTCTAAAATTTCTTCCAGC 10681 30 100.0 35 .............................. TAGGGTAACGACCTTTCTATAGTAAATTTCATATA 10746 30 100.0 37 .............................. ATTTCTACACTGTCTAAACGTTCTAATGTAAGTACAA 10813 30 100.0 37 .............................. AGGCTATGTCTGGAATGCTTGCAATTATAAATGCATC 10880 30 100.0 37 .............................. TCTTTATTTTTAGTTTCTAGTTTTACCTTCTCACCAA 10947 30 100.0 35 .............................. GAATTAAAACTTCAAGAAGATAAAATTAACAAAGA 11012 30 100.0 36 .............................. AGAGAAGAAATTATCATCAGACACTATTAGAAATAA 11078 30 100.0 36 .............................. TTATTATTACAAAAAAACATTGCTATAAATCAGCAA 11144 30 100.0 36 .............................. ATGATGAGATGAGTTAAGATAGGTAATATCGTTCAA 11210 30 100.0 36 .............................. CAAAAATAAAAATAATATTAGACAAGGTTCTCAAAA 11276 30 100.0 36 .............................. TTGCTCACAATCACAGATGTTTCGTTCTCAGTAAGC 11342 30 100.0 36 .............................. ATAGTAGAATATATCGGAGACTTAACTTGTAAGTAC 11408 30 100.0 36 .............................. CAAATCATTTGACGTGCAATGAAGATGTAAATTGCC 11474 30 100.0 35 .............................. GTCAATAATGATACTAAAAAGAATTTATCTTTAAA 11539 30 100.0 36 .............................. ATTAAAGGAATCTCCTGAATGGGTTCAAGAATATAT 11605 30 100.0 37 .............................. TAAAGGATCCAGGAGATATAAGAATCAGTTGGTATTG 11672 30 100.0 36 .............................. ATATCAGTTTCTAATTTTTGTCGTATTCTCATTAAC 11738 30 100.0 36 .............................. ATCCAAATCCTAATACATTTAGGATTTCAACTAGTG 11804 30 100.0 35 .............................. TATATTAAGTTATCAAGTTAAACATAATATACTAA 11869 30 100.0 34 .............................. TTAAATCCTTATATAAGTATTGACGGAGGTTTTC 11933 30 100.0 35 .............................. CTGCATTAAAATATTTTAAACGTCTTAATACGTTT 11998 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 29 30 100.0 36 GTTGAACATTAACATGAGATGTATTTAAAT # Left flank : AAGCCATTTAGGCTTAAGGAGAAGATATAATGAGTAAAAAATTTAATTATAATTATGCATTTTTATTTTATGATGTGAAAGAAAAAAGGGTAAATAAAGTGTTTAAGGTTTGTAAAAAGTATTTAACTCATTATCAAAAATCTGTTTTCAGAGGTGAGATAACACCTTCTAATATAATAAAATTAAGAGAAGATTTAAAAAAAGTAATAGATGAAAGTGAAGATTTTATATGCATAATTAAATTATTAAATAATAAAGTATTTGGAGAAGAAGTGCTAGGAGTAGATATTGAAACAGCAGAAGATTTAATTTTATAAAATTATTTTACCAACTGCTTCGAAAAAATAAAACGGTCAAAAGTGTTGATTTTACTGGTTTTCTATGTAACTTAAACTGAAAAAAATAAGTTGTTAAAATTGGTTGGGAAAAAATTAATGAAAGTGTTTATTTTCAATAGGTTTAGGGGTATAATAGAAACAAGGAATGGCTATTTTACTATG # Right flank : TAGAAAGTAAGTAAATATTAATAGAAGTTGTTATAACAACTTCTATTATGAGAAGAATTGTTATAAAAGACATGAATGATAGATGTTTTTGAAAAATATACTCAAAGTTACTCAAAAAATGACTAATATACTCAAAAATTTAAAACACCCCTATAAGTAAAAACTTATAGGGGTGTTTTAATTATCTGGAGTAATTAAATCTATATTGTGTTCTTGAAAAAACTTAACATATTCTTTAGGTGGAAGCTTATCGGTAATAAAACAAGTGATATCTTCCAAATTACAATAAGTTTTAAGAGAAGCTGTATCTAATTTTGAGTGATCAGCTAAAAGTATTACATTTGAACTATTTTCAACTACTGTTTTTTTTACATCATATTCAAAATTAGATGAATTAGTAACTCCTTTATCAATAGAGAAACCTGTAGTGGCCATAAATGCTTTCGATATATTATAATTTTTTAGGAAGTTTGAAGCTTCTACACCGATTAAAGAATTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 53615-52601 **** Predicted by CRISPRDetect 2.4 *** >NZ_JDRY01000038.1 Clostridium botulinum C/D str. DC5 Contig38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 53614 29 100.0 36 ............................. ACGGATGATTTGGCGGTGGTGTTGCTCTAAGTCTAT 53549 29 100.0 36 ............................. TTATTCTTCGCCCTCCTTAATAAATACAAAAGGAAA 53484 29 100.0 37 ............................. AAAGGTAGTTTAAGGCTTAGTGATAATGTACTACTTA 53418 29 100.0 39 ............................. GGGTGTTTTAAAGACAGATATTTTAAAATGGGTGCGTGT 53350 29 100.0 37 ............................. TTGCTTTCGCTTCACATCCGCCATATTCTTCTAAAAA 53284 29 100.0 37 ............................. GAATTTGTTACGTGTGAAAAGTATTATTATTTTATAT 53218 29 100.0 36 ............................. TTTTGAGATTTAGCTGCTATAAAACCTAGTGCAATT 53153 29 100.0 37 ............................. TTTTTTATCCCTCCAACATTATAATTCTTTTACTATT 53087 29 100.0 36 ............................. TTATTTCTCTTAATTTCATTTCTTTTAACATTTTAA 53022 29 100.0 37 ............................. TCATGCAAAACTTCACATTGATATACTTTCGCTCTAA 52956 29 100.0 37 ............................. TCTAATACGTCTTTTGCTATTTGTAATTGCTCGTCCA 52890 29 100.0 37 ............................. CGGTATCGGGATACATTTTTTTTAGTATCTTACATAT 52824 29 100.0 36 ............................. CCAATTACTTGAGATATATTTTTGAAAATAGCTTTT 52759 29 100.0 36 ............................. TACAGAATAGTATATAATTTCTTTCATTACTTTTTT 52694 29 100.0 36 ............................. CTAAAACTTGCTATATATTGCATTCTGTACTTCACC 52629 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 16 29 100.0 37 GTTTTATATTAACTATGTGATATGTAAAT # Left flank : ATTGAAGATGAAAAATATAAACCTTTAAAGGCATGGTGGTAATTGATGTTTGTTATACTAACATATGACATTGAGGAAAAAAGAATAAATAGAGTAAGAAAATTATTGAAAAAATATTTAATATGGACTCAAAATTCAGTATTTGAAGGAGAGATTACAGAAGGGAAATTGCATAAGTGTTTATCTGAGATAAATAAACACATTGACAAAAAAACAGATTCAATATACATTTATAGAGTTAAGATGAGCAAAAATATAACGAAAGACGTAATAGGTATTGAAAAAAGTTTCGATGAACTATTTTTGTAAATACAATTTGCAGTATTGCAAACAAATGTTCTCATTGCCTTAAAGCCTTGACATATCTAGCATAAAGGGTATTATTTAAGAAAAATCCAAAACACTACTTAAGGTTTACTGCAAAATTGCTTAAATTAGAGTTATAGCCGTTTGGTTCAAGGCTAGTAGTATCAATAGGTTCAGGTGTTTTGTATTTTAGG # Right flank : TCATTTAAATCACCTCCCAATAATATTAATTATTAACAGTTTTATGGTTCTTTCCAATGTTTGTTGAGTAAATATTTAATTTATGATAAAATTACTTATAATTTGATAATACTAAGGAGTTTTTTATGGATGAATTTATAAAATTATTGGATGAAAATCTTGATTACATTAGTCATAAAATTATAGATGATACTTTTTATATACAAGATCAAATAATGATGTTTTAAAGTGGTTAAAGAGTTATCCTAACATTAAAGTAGTTTCTAGAGATGCTTCTATTACATATAAAAATGCTATTTCTAAAGCTCATCCATCTGCGATGCAGATTAGTGATAGATTTCATATGCTTAAAAATTTTACGGAGTATTGTAAACAATATTTAAATAAATATTTTAAATCTCAAGTTATGATAAATAATAGTAATTCTAATAAACAGGAAATGAAAAATATCATAAGTAATTTCCAAAATGAAAAAGCTTTAAAAGCAAGACAAATGTTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGTGATATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //