Array 1 176638-174777 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTM010000006.1 Salmonella enterica strain S29 NODE_6_length_340153_cov_112.539947, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 176637 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 176576 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 176514 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 176453 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 176392 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 176331 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 176270 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 176209 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 176148 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 176087 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 176026 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 175965 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 175904 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 175843 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 175782 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 175721 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 175660 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 175599 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 175538 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 175477 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 175416 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 175355 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 175294 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 175233 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 175172 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 175111 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 175050 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 174989 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 174928 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 174867 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 174806 29 93.1 0 A...........T................ | A [174779] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 194099-193278 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHQTM010000006.1 Salmonella enterica strain S29 NODE_6_length_340153_cov_112.539947, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 194098 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 194037 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 193976 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 193915 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 193854 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 193793 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 193732 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 193671 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 193610 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 193549 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 193488 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 193427 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 193366 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 193305 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //