Array 1 274-2 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV823562.1 Corynebacterium sp. HMSC27B11 Scaffold264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 273 28 100.0 33 ............................ CCATAACCCCAATCACCACCATTAGCGGCGATG 212 28 100.0 33 ............................ CTCGGTCCGTACCGGCGCTACCAAAACAGCTAC 151 28 100.0 33 ............................ CGGGCAGGCGGTGAGGATCACCGCGTCGCGGTG 90 28 100.0 33 ............................ CTAATTGAGCAGGGTAGACCACCCAGACCACTA 29 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTGCTCCCCGCGCTAGCGGGGATGAGCC # Left flank : GTGCTCCCCGCGCTAGCGGGGATGAGCCCAGCGCGATCAAGCCGGTCGTGGAGGCGATCAAGTGCTCCCCGCGCTAGCGGGGATGAGCCTAACGGCATTGAGGGTATCGGATCAACCGTTGCGTGCTCCCCGCGCTAGCGGGGATGAGCCCCCAGGGGTAGTCCAATGGTTGGTGTGCTGATGGTGCTCCCCGCGCTAGCGGGGATGAGCCCATTAGGCCCGCCTTCATCTCCGGTAACGCCGCGTGCTCCCCGCGCTAGCGGGGATGAGCCCTGCGTGATATCAAACAACTGGAACATATCGTCGTGCTCCCCGCGCTAGCGGGGATGANNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCGCTAGCGGGGATGAGCCGGGCCTGAACAGTTTCGCCCTCCGTCGCCGGG # Right flank : CC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 685-413 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV823562.1 Corynebacterium sp. HMSC27B11 Scaffold264, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 684 28 100.0 33 ............................ CAGCGCGATCAAGCCGGTCGTGGAGGCGATCAA 623 28 100.0 33 ............................ TAACGGCATTGAGGGTATCGGATCAACCGTTGC 562 28 100.0 33 ............................ CCCAGGGGTAGTCCAATGGTTGGTGTGCTGATG 501 28 100.0 33 ............................ CATTAGGCCCGCCTTCATCTCCGGTAACGCCGC 440 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 5 28 100.0 33 GTGCTCCCCGCGCTAGCGGGGATGAGCC # Left flank : | # Right flank : CCTGCGTGATATCAAACAACTGGAACATATCGTCGTGCTCCCCGCGCTAGCGGGGATGANNNNNNNNNNNNNNNNNNNNGTGCTCCCCGCGCTAGCGGGGATGAGCCGGGCCTGAACAGTTTCGCCCTCCGTCGCCGGGTGTGCTCCCCGCGCTAGCGGGGATGAGCCCCATAACCCCAATCACCACCATTAGCGGCGATGGTGCTCCCCGCGCTAGCGGGGATGAGCCCTCGGTCCGTACCGGCGCTACCAAAACAGCTACGTGCTCCCCGCGCTAGCGGGGATGAGCCCGGGCAGGCGGTGAGGATCACCGCGTCGCGGTGGTGCTCCCCGCGCTAGCGGGGATGAGCCCTAATTGAGCAGGGTAGACCACCCAGACCACTAGTGCTCCCCGCGCTAGCGGGGATGAGCCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 1 47881-48322 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV823567.1 Corynebacterium sp. HMSC27B11 Scaffold374, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 47881 28 96.4 33 N........................... CAGGTCGGCGGCCTCGCCCCACGACACGCTACG 47942 28 85.7 33 ...T..T.T....C.............. CTCTGGTTTCGACCTGCTTGACGGCCTGACCGT 48003 28 100.0 33 ............................ GCGTCATGCTCTCGCCAGCCGCCGATTTCCTGG 48064 28 100.0 33 ............................ CACGCAGGTCAGCAAGTACCGTCGAAATTATGA 48125 28 96.4 33 .....................G...... CTAACCGCCCCGACCACAGAAAGGAGACCGCCA 48186 28 100.0 21 ............................ NNNNNNNNNNNNNNNNNNNNT Deletion [48235] 48235 28 100.0 33 ............................ GGAGCCGATGAAGCCGTGTGACAAGCCGGACTC 48296 27 89.3 0 .....................-.CC... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 96.0 31 GTGCTCCCCGCGCTAGCGGGGATGAGCC # Left flank : GCGGGCATTAATTGGGGGAAGGAAGGAGCGGAGCAGTGATGGTGCTGATCGTCACTGCCTGTCCAGCGGGACTGCGAGGGGACCTAACGAAGTGGTTAATGGAACTCGCACCGGGGACGTTTGTTGGTAGGCCTTCGGCGCGGATTCGTGAGCTTCTATGGGATCGAACGGTGGAGTTGTGCAAGGACGGCCGTGCGCTGCTGGTCTACAGCAGCAATAACGAGCAAGGTATGGAGTTCCGCACGCATCGGCATGACTGGGAGCCCACCGATTTTGACGGTCTTAAGCTCATGATGCGCAAAAGCGATAGTGAGAAAACACGACGCAGAACGGGCTGGAGCAAGGCCCGCCAGTTGAGGCGTAAGTACGAGGGCCGGTAGGTCGGGGCGGGATGGCTTCGTACAGTTGAAGCTAGAATGACGCTGAGGCTCGAATATCCGCTGGTCGTCCAGTGTGCTCCCCGCGCTAGCGGGGATGAGCCNNNNNNNNNNNNNNNNNNN # Right flank : CGCGCAAGGTGGAGGTGCTGGCCATTGAGGGGGGAGTGTTCCTCGCGCCAACGGGGGCATCCGTTCCCCGACTACAACGTCCACAGAGCCACTGCCATAACCCTCGCGCACGCGCTGCCTGCGCGCTATTGTCGGTTTTGTCGGGCAAATCTCCCGGCTCCGCGCTCGCTGGCGCGCGGGAGCTCAAGAGAAAAATCGACTGGAGGGCAACAATGGGGATCATCGATAGCCTGCAGGCCTGGGCTGGGGAGCATGAAACATTCATCTTCATTCTTTTCATGACGCCGTTCGCCATCGGATTGAGCTTCCTGTTTGAGGGCGGAGACGGCGGCGATTACGGCGGGGATTAGCTCCGCCGTCGACATCCTCGACGCGCCGGATGGAAGTGAAATACTCCGACCGGGGTGAATGTGTGCCGTGTGAATGCAGAACTGTGCTGCACTTGTTGGCCTGCCGTAGGCTTGCCCTGGCTGCGCGTCGCTCGCCCCACTGTGCCGTGC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-E [Matched known repeat from this family], // Array 2 60419-61640 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV823567.1 Corynebacterium sp. HMSC27B11 Scaffold374, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 60419 28 100.0 33 ............................ CCGTCTCGGCGGTGGTATTCGCTTCCAGGTGCC 60480 28 100.0 33 ............................ CCAACCCACCCACACAATCGGCGTACTCCTCGA 60541 28 100.0 33 ............................ GAGCCGGGCACTAGCGAGGCTATCCCCTTCGCC 60602 28 100.0 33 ............................ CCCGGCGAACACTACATCCTCGCGGAATACCAA 60663 28 100.0 33 ............................ CGCGGGCTTCGGCAGCACCCCGGAGTCCTGTAG 60724 28 100.0 21 ............................ GANNNNNNNNNNNNNNNNNNN Deletion [60773] 60773 28 96.4 33 N........................... CGGTGCACCGCAGTCAGGGCATTACCGTTGACG 60834 28 100.0 33 ............................ GTCGGTGTCTGCCTGCTTGCGTTCCTCGTCTGC 60895 28 100.0 33 ............................ CTTCGCCGCCACGGCGCGAGCAACCCGGACGGA 60956 28 100.0 33 ............................ GATAGCGGGGGCGCGGGGCTGCCTGGAGACCTG 61017 28 100.0 33 ............................ CGCAGCGTCCAGGGACGTGTCGATCACCCGACG 61078 28 100.0 33 ............................ TGTTTGCGGGGCAATGTTGCGGGCGGGCCATCC 61139 28 100.0 33 ............................ CAGAATGTGGCGCTAGCCCTGGAGCCACTCGCA 61200 28 100.0 19 ............................ NNNNNNNNNNNNNNNNNNN Deletion [61247] 61247 28 96.4 33 N........................... CTTAGCCAAGCCTAAATACCTTCCTCTACGTGA 61308 28 100.0 33 ............................ CCGGGCATCCGCCACGGGGGCCGCGTCCACCGC 61369 28 100.0 33 ............................ CCAGGGTAGCGACGCACTGCCAAGAAAAGTCGA 61430 28 100.0 33 ............................ CGGGCAGGCCCCCAGGATCACCGCGTCGCGGTG 61491 28 100.0 33 ............................ CGCCGTCGGGCCCGTATTCCGCAAGCACGGATT 61552 28 96.4 33 .C.......................... TGTGATGGTGAGGTTGAAGGTGACGTTGTATTC 61613 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.5 32 GTGCTCCCCGCGCTAGCGGGGATGAGCC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCCGCGCTAGCGGGGATGAGCCCGCCGGTAGGGCGCAAGGCGGGGAGCGCGTCAG # Right flank : | # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.07, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTAGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [21.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //