Array 1 483832-485690 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYBR010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain HUD_1_14 NODE_42_length_719024_cov_31.416241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 483832 29 100.0 32 ............................. AGAAAGATGCGTACGTTCAATGTCGAGCTTTT 483893 29 100.0 32 ............................. ACTGGCTAATCACGGTTAACGCCGTGCCGGTG 483954 29 100.0 32 ............................. CGGCCGGACTGATTTAACGAGGGGAATTTATG 484015 29 100.0 33 ............................. TTTTATCGTCGTAGCCTATTGCTAACTTGACGC 484077 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 484138 29 100.0 32 ............................. TAATCTTTCAGCGCGTCCTGGCGGTCAACGAG 484199 29 100.0 32 ............................. TTGAGTGCCACGGCCAGAGCGGTAGCCATTAA 484260 29 100.0 32 ............................. AAAACGGGTTTGCGGAAGGCTGGAACGCCTGC 484321 29 100.0 32 ............................. GAGCGGATCCGGGATCGTCAGCACTCTGAACC 484382 29 100.0 32 ............................. CACGATTTTATGTGCCGCGTCGAGGCGTGGGC 484443 29 100.0 32 ............................. GCGACCAAACCATTCGGATTCCGTAGGGGACC 484504 29 100.0 32 ............................. ATTTCTTGCCTATAATTTCCGGTTCGACGCCA 484565 29 100.0 32 ............................. CACAGATCGCGAGTTTGCTGGGTATATCTGAA 484626 29 100.0 32 ............................. GGGAATGGCTGGATCTGGTGTTGGTTATTTGC 484687 29 100.0 32 ............................. CCGCCGCTGTTCTTCTGTGTCTGCTTTTGTCC 484748 29 96.6 32 ...C......................... GCAGTAATCCCGGGTATTCCGAGTTATATGAA 484809 29 100.0 32 ............................. CGAGAGATCATAGACCAATGGACTGAAAGACT 484870 29 96.6 32 ..G.......................... TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 484931 29 96.6 32 ..G.......................... AGTACGAGGCACTATTCGGCAAGAAACCGCAC 484992 29 96.6 32 ..G.......................... GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 485053 29 93.1 32 ..G.....................C.... GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 485114 29 96.6 32 ..G.......................... GCAAGCCACAGCGCAAAAGAGGTCTATTCCTG 485175 29 96.6 32 ..G.......................... GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 485236 29 96.6 32 ..G.......................... CGCCATAAACGCGACTCCGTCACACATCCGTA 485297 29 96.6 32 ..G.......................... ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 485358 29 93.1 32 ..G........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 485419 29 96.6 32 ..G.......................... GGGCATGAGTGCTACTGCTTTCAACCCGAAAG 485480 29 96.6 32 ..G.......................... ATAAATTATCGGGAAATCATAATCAGCGCCGC 485541 29 96.6 32 ..G.......................... AAAACCCTCAAATATGCGTAACGGGAGGCTGG 485602 29 96.6 32 ..G.......................... TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 485663 28 79.3 0 ..G............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 97.6 32 GTATTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 503323-505304 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACYBR010000050.1 Salmonella enterica subsp. enterica serovar Kentucky strain HUD_1_14 NODE_42_length_719024_cov_31.416241, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 503323 29 100.0 32 ............................. TTTTTTATAAATCTGGCGAACCTGCACCCCCT 503384 29 100.0 32 ............................. CTCTCAGCCCCTCCGGGGCGCCCCGTGATAAT 503445 29 100.0 32 ............................. CATCCCCCCTCTTTTCCCCGGGTGTTTGTTGG 503506 29 100.0 32 ............................. ACGGTAGGAATATTCACGTTTTTTAAATCGGA 503567 29 100.0 32 ............................. ACGTGACCGCCGAAATGATTGCGGAAATCGCC 503628 29 100.0 32 ............................. CGCGCCCACCGTTCAGCCCTGGAAAAAGCGGC 503689 29 100.0 32 ............................. CCGCCTTCACCCAGCCCGCCGGACATCTGATC 503750 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 503811 29 100.0 32 ............................. AAATTTATGAGGAAAATTATGTCAGACAGTAA 503872 29 100.0 32 ............................. AGGAGTTGTTAGGCCAACTGTATAACGATTTA 503933 29 100.0 32 ............................. AGATGACCATCCCACCAAGCAGGCGAAGAAAA 503994 29 100.0 32 ............................. GTGCCGCTGATTTTCGTAACGCCTCAATGTAT 504055 29 100.0 32 ............................. AAAAAACAATGGTTTTACCGTCCGGCTGAACA 504116 29 100.0 32 ............................. CCGATGATCCAGAAAGTCACAAATGCGAGGAG 504177 29 100.0 32 ............................. AGGGGTTCAGGGGCGAGCGGGCGTTAAAGCGC 504238 29 100.0 32 ............................. CAGACCAGGGAGTTTCTGGCCGAACTGGAGAG 504299 29 100.0 32 ............................. ATGTGCGCATTATTGCTAACCATAGAGACTCA 504360 29 100.0 32 ............................. GGCGACGGCACAAAACGCTCAAAACTCATAAC 504421 29 100.0 32 ............................. TGTTGGCTGGTAACCACCGCAGATCGTCACCT 504482 29 100.0 32 ............................. ACCAGGGGGTTTTTTCCACGTATCGCCGCTGC 504543 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 504604 29 100.0 32 ............................. CCCTTTATCTTAGCCGCCAGAACCAGAACGCC 504665 29 100.0 32 ............................. GCCCCGATAGCGTCAACTACCAGGGCCTGCAA 504726 29 100.0 32 ............................. AATTCTTTTGCTTGCGCGTCGTTCATATCGAA 504787 29 100.0 32 ............................. GACAATCAGGGGGCGCTGGTTGACAGTATTAA 504848 29 100.0 32 ............................. TTAGTCAGGACGACTTTTACGGCTATGTAGGC 504909 29 100.0 32 ............................. CTATGAGCAACGATATCACCGCACTGGCGCAG 504970 29 100.0 32 ............................. CCGTAATGCTTTTATGTCCTCGCTTCGCTGCG 505031 29 96.6 32 ...................A......... GAGGTAAAACTAACTGGCCGCGTTGTCCGTCA 505092 29 100.0 32 ............................. TACGCCAGAGGAATGGCTTTCAGTGTTTTGGT 505153 29 100.0 32 ............................. ATATTTTGGCAACTCGTCGTACATTATCGCCA 505214 29 100.0 32 ............................. TGATATTTTTGGTTATTTGCGATTTAGTTTTT 505275 29 100.0 0 ............................. | A [505302] ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCTCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //