Array 1 127090-126208 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOVO01000005.1 Xenorhabdus japonica strain DSM 16522, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 127089 29 96.6 32 ...........................G. TGTTAAAGTATTCTGGTGTTAAAGCTGATTGA 127028 29 93.1 31 ...........................GC ATTAAAGGGCAATATCCTGATGCTCGTCATC 126968 29 100.0 32 ............................. CAACTTGCTATTCACCCATCGCGGGTTATTGT 126907 29 100.0 32 ............................. AAGCAAGTCAAAATTGGCACTCGCTCAATAGC 126846 29 100.0 32 ............................. ACTATAGCAATAATCGGTAAAGACAGCCTAAT 126785 29 100.0 32 ............................. AACCTGAGTTGAAAACCAATAACGATAACAAC 126724 29 100.0 32 ............................. GCGATAATCTATTGGCATTGGCATCTGCTTTA 126663 29 100.0 32 ............................. TGATTCCCGATAGTTTCTATTACTATTCACTC 126602 29 100.0 32 ............................. GATGCAGATACGAATGAGCATAAACATCAGGA 126541 29 100.0 32 ............................. CAGAGAGTATATGCAGGGGGTTTGAATGAAAA 126480 29 100.0 32 ............................. GAACTCAGTTGCGGCTATTTTTTTGAACCTGA 126419 29 96.6 32 ..................A.......... GTGCTGCTATGGCGACAATGATAACAGTCACT 126358 29 100.0 32 ............................. CGAGATATCAAAAGAACCAAGGAAGCGACAAA 126297 29 100.0 32 ............................. TACGCAGGCAGATAACGAGAAACGATATCTGA 126236 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTGTTCCCCGTACCTACGGGGATAAACCG # Left flank : ATCTTATTGCTTTGTAGATAATCAGACTGATTATATATACATTGCCTCTATTGCACGGAGTTTCCCTTTAGAGCATGTCGAGATGGTCTTTTTTGAGTGGATAGCACCGATATGTTATTTATATGAATACTCACGCGCCTATTCCCTCTGGATGGACTATTTTTGACCGAAATGAGCTATGAAAAGATATTTTGGTATGTAGTCGAAAGCAGTATAAAGCATCTAAAAAAATAATGGGAAAAATTAAAAACAAAGTAATACGTTATTTTTTTCATAAAAAATTTAAATATGAATGGTTGTTATCTGAGAAAATTTTTTCTGGAAAATATTGTCAATTGAAAGAATTGTATCTGTATGTAATTTGTTAACGTGTGAGTTTAATGGAATGTGTGAAATTAGCAGAAAAATAGAAGAACTAATTTGACTGCTTTATAAGCGAAAAAAATGGTAGAACTTTCCCGCTATAAAAAGTGATTATAAAACAATTGGATAAAATTAGA # Right flank : GATGATCTTCAACATAGGCGTGATTGATAACCGTGTTCCCCGTAGACAGAGAAATGCAGGGTTTTATCGATCAGAGCTTGCCTGTCATGTGTGGTGACCTGTAACCGAACAGGCATTTTTTCACAATCTTTCCCGCCCGGGGCATAAGCTACACCATTGGTAATCACATCACATTTGAATTTCAGCGGCGCTAAATCACTTTCCTGCAAAACCGATGACTGGTTCATCTCGCCGGAAAAGATATCTTCCACGGTCAGTTCACTATAAGGGGATTCCAGTACAGGCTGGAGCTGGTAGACGATTTTCATTGCCACAACATGATATTCCTCGTCTTTGGTATCCAGCATTTTGTAATTAACCCCAATTCTGTTTAAGCCGTCACTGGAATATCTTTTTCTTCTGAGTAGAAAACTTTCAGTGATGGTTTCTTCTTTTTATGACAATAAGCCATTAACCCCGTTAAAACAGTCAACAGAAATCCTTTCATACTTCGATGACGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACCTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 137240-138122 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOVO01000005.1 Xenorhabdus japonica strain DSM 16522, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 137240 29 96.6 32 ............................T TCAAAAACCCTTCTGAACTGCCACCGGAGACC 137301 29 100.0 32 ............................. TCATCAACCCACATTCACTGACCAGCGCATTA 137362 29 100.0 32 ............................. CTCTCGTGCCTTGTCTCATGGCTTCACACAAC 137423 29 100.0 32 ............................. TACTCATGTTGATTTCCTCAATTTTGTATCAC 137484 29 100.0 32 ............................. ACAGTGGAGACAGCATAATGCGTGATATGCGG 137545 29 100.0 32 ............................. TTAGAGATGAGTGTCCTGATGATTTTGCCGCC 137606 29 100.0 32 ............................. GCTAATGTTTACGCATCAGCTATTCTGAATGA 137667 29 100.0 32 ............................. CCTTATGGAAGACGCCAGCCGATATTAAGGCT 137728 29 100.0 32 ............................. CCGTGGCTGACACTGGATTGGGTACTCAAGCC 137789 29 100.0 32 ............................. CACTCACCGCATGGCATGAATACGCCTGTGCA 137850 29 100.0 32 ............................. CACCAAATGGACTTATGCCCAGTTATGGGCGG 137911 29 100.0 32 ............................. CTGGATATTGATGGCAAACGCCAAGTTGTCAC 137972 29 100.0 32 ............................. CGACAATTCTCAGCACATTTTTTCCATGCTAA 138033 29 100.0 32 ............................. ATCAGTTATGGGCGTTTAGTTATATATCCGAT 138094 29 89.7 0 ..........................TAA | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.1 32 GTGTTCCCCGTACCTACGGGGATAAACCG # Left flank : CCCTTAATTGAAGAAGTCCTTGCTGCTGGTGAAATTTCTCCCCCTCCCCCACCTACTGATGCACAGCCTCCCGCCATTCCTGAACCAATATCCATCGGCGATATTGGGCACAGGAGCCAATAAATATGAGTATGACCGTTGTTGTAACAGAAGCCGTTCCCCCTCGGTTACGGGGACGTTTAGCCATTTGGTTATTGGAGATACGGGCAGGCGTTTATGTCGGCGATATTTCCCATAAAATCAGAGAAATGATTTGGGAACAAATCACAGAGCTTACCGAAGATGGAAATGCCGTTATGGCATGGCAAACCAATACCGAATCTGGATTTGATTTTCAGACCTTTGGTGAAAACAGAAGGGAACCGATAGATTTTGATGGCCTACGTTTAGTGAAGTTTAAACCACTTTCTGAAGGTTAGTTTGGAGGAGTTAAAAAGCGATTAAAAATGGTAGAATTTTTTCCAACAATAAAGTTATTTTAAAACAGATAGATAAAATTA # Right flank : ATGTAGTGAGAATATCTGGAAGGTGGAAAACACATATACCCATCTTCAATGACGATAGGTATATGTTTGCAAATATGTGCCTATTTCTCCTTGCTGAATAATATGCTATATGAATGGAAACCAATATTATCTAACTTTTAATAAGGATGGAGAAAAAATATGGCAGTCAGTATTTAATAAAAAATCACAACATAAATTAATTATGCTTGGATTCACATATTAAGCGCAACACCGTAATGAACGAAGTAAATGAGTGGGTATTCCTTTAAATAACTCATTCGGTGTTTTGTAATCTCGTGTCTTACGAGGACGATTATTTAATCGGTTTGCCACAAGGTGAATCTCCAGCTCTGATACCTTATTAAAATCCGTTCCTTTTGGGAAGTAATCTCTGATTAATCCATTCGTGTTCTCATTTATCCCTCTTTCCCAGGGAGAATACGGGTGAGCAAAATAAATTTTTGTCTCTAAATTTTTACTGATCAGTTCGTGTTCGGCAA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACCTACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.30,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //