Array 1 49025-50771 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCMX010000035.1 Phocaeicola vulgatus strain DFI.3.65 JBNIPLAI_35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 49025 33 97.0 32 ................................G TAAAACGGAACTCATCCTTTCCATTAGCCGTG 49090 33 100.0 33 ................................. ATTGCTTCTGAAACTGTACAAACCTCAGAAAGA 49156 33 97.0 31 ................................C TTGATTATCAGACACTTACAAACAAATTTAA 49220 33 100.0 32 ................................. TGTTATGATTGAAACATTAATATTACTTGGTT 49285 33 97.0 34 ................................C CGGTATGGAGAACAACAAACAGAGCAACACTGTT 49352 33 97.0 33 ................................T GTTGTGAGTTTATTACCGATGAAGTTAATCGAA 49418 33 97.0 32 ................................G TCTGTTAATGAAACTTCGCCTTCCATTATTTT 49483 33 97.0 33 ................................C TTGGAACTTATTAAATCAAAATACCCAACTGCC 49549 33 100.0 34 ................................. ATTATGACACATAAAGAAATAGAAAACGAACTTG 49616 33 97.0 35 ................................T GCTGGGATGCGGCAGGCGAGATAGCCGGTGCCTGG 49684 33 97.0 34 ................................T TCGTCCTGTCGGTCGGCGACTATGTGGAGATATC 49751 33 97.0 33 ................................T GGGTAAAAATTTATTTTTAACAAATGATAAAAG 49817 33 100.0 31 ................................. GAACGTGCCCTAGAGAACGAAGTAATAGACC 49881 33 100.0 32 ................................. TTATAGTAATAAAGATCATTCGCCTCAGAATG 49946 33 100.0 32 ................................. GATATTATAGACCTGTATGGACTATATTGTGA 50011 33 100.0 33 ................................. AGGTGTAAATATGGAATGTGACGGAGAACCAGG 50077 33 97.0 33 ................................T AGATCTATTATAAAGATTACAGAGAGTAAAGAA 50143 33 97.0 33 ................................C GCAAAATGAAATGGTTGTGGATGTGAAAGTTAA 50209 33 97.0 32 ................................T CACCTGTACACCAGTATGGGTATTGAATGGGC 50274 33 100.0 32 ................................. CGATACAGCCTATATAGAGAAGGAGAAAGAGG 50339 33 97.0 33 ................................C CGTGAAATGGTTATTTTTATAAGGGTTTGCATT 50405 33 97.0 33 ................................T ATGGTTGATGCTATGAATTTTATGGGATCTCTA 50471 33 97.0 34 ................................G CAGGTATCCTTTCTTGAAAGAAAGGAACGATGAG 50538 33 97.0 34 ................................C GGCAAGACGGATGAGAGCACAGCAGAGATCATGC 50605 33 97.0 33 ................................C GTTGCAAAATGATTAAATGATGATGTCCTGAAC 50671 33 100.0 33 ................................. CCTTCGACTACCTGGAGGAGATACCTGCACATG 50737 33 93.9 0 ....................A.........G.. | TA [50756] ========== ====== ====== ====== ================================= =================================== ================== 27 33 97.9 33 GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Left flank : ATATTGACGATTATCCGGTATTTCTTATAAAATGATTTTTAATTATGTACATTCTTGTGACTTACGATGTGGATACTACAAGCAAAGAGGGGGCTCGCCGTTTACGATGTGTGGCCAAGGCTTGTCTGGATTATGGACAGAGGGTGCAGAACTCAGTCTTTGAGTGTGTAGTGACGGAAGCGCAATATTCTCTTCTAAAAGGGAGAGTTAGGGATATTATTGATATGTCTCTTGATAGTGTTCGTTTTTATATTCTTAGTAAAAATGAGAATAAGAGGGTGGAAGTAATAGGTGTTGAAACGGCGTATAAACTTGAGGAGGCTCTTATAATATAATGCGAATGTGGTGTGTTACAAAAAAAGTAGTATCTTCGCATGTGTTAATAATCAGTAGATTAAATTATTTGTAGGGTATTTCTTTGTTATGAAGTTGAATAATAATGATGATTCGCATAACAGTGGATTAAATTTGCTGATTTATAATATGTTATTAGATATAGA # Right flank : TTGTTCACTCGTTGGTCAAGTTTATGGAAGGATTGTAAGCATTCGGCCTCTTGTGTATTTCTCTTCAAGCTGTTATAAAGTCAAAAGCCAAACGAAGTACGTTAGGCTTTTGACTTTGTTATGACTGGAAAAAACACGCACAATCCCGGATGCTTATCTTTTGTCTGTCTTCTTTTGTGGTTTCACCTAGGTGACAATACATTGGCATCTAAGTGGAGAGGCGTAGTCACCCAAGTGATACGCTTGCTTCACCTTGGTGAAACTATAAATTCAACTAAGTGTTTCAAAGCAAATATATTATATTTTTATTATACTATCCCTTGTCGTTTATTTGTTATATTGTTGGTTATTAATGTATTATTATCTGTTTGTATCGATTGTTTTTTCTTGTCTTTATAAGATATATTAAAACATAAACTAACATGAAAATTGGTAT # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACACCCTGCGTGGGTGTGTGGATTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //