Array 1 24-539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEQV010000030.1 Pseudoalteromonas sp. PPB1 NODE_30_length_65963_cov_145.947, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 24 29 100.0 32 ............................. GAAAATTGCCGGAACCATTTGATAAAGGATTA 85 29 100.0 32 ............................. ATCGGGCATGCGGTCACCACTTACATTAGCAA 146 29 100.0 32 ............................. GCGCTCCAGCGTTACAGGTGCACATTGGTGCG 207 29 100.0 33 ............................. TGCCTGGTACAATTTCGCCAGGGACCACGGGCG 269 29 100.0 32 ............................. CGCTATCCACCATTGACCGGCTAAAACAGGAA 330 29 100.0 33 ............................. TAATTTAACAGCGCTTCGATCCAATCCAGTAAC 392 29 96.6 32 ..C.......................... CAATACACATTGTACGTGCGGAAACACGAGCC 453 29 96.6 30 ..C.......................... GTCAACTCACGTGTGGCGCAATATCCAGCT 512 28 82.8 0 ..C......A...........-.C.G... | ========== ====== ====== ====== ============================= ================================= ================== 9 29 97.3 32 GTGTTCCCCGTACGCACGGGGCTAAACCG # Left flank : ATTCAGATCCTGTTAGGGGTTCTG # Right flank : GGGTTTTGCTTTCTTCTAGCTTATTTTTAGAGCTTTTGCTTTATAGCTGGCTATTTGCTGAAAAACCAATACAATGTCGCGCTCATTTTTAGGTACATATTTAGGATAGATATGAAGCAGTTACCTTCTTTGGCCGGTTTGACTTTGTTGTTGTGCGGTACGAGTGCTATGGCGGAGCAAGTTCAGGCGGTAAATTATGATTATGTTGAAGCGGGTTATAAGCGTCACGGTGATCAATCCGACTTTTCTACTGGCGGTATGCAATTAACGGTCAGTAAACGTGTCGACGAGTTTTACTTTGAATTGAATGCTGAGCAGTTCGAGAGAACTGTCAACCAAGTTAATACTGCTGAAGGCTTTGAAACTTTCCATACAAATCATGGTGTTGAACTGACCAGATATCGTGTGGGTGGCGGTTTTATCTTTGATTTGGACAGCACTTCATCGGTAGATGTTGGCTTACTGCACGGTAAAATGGAGATCGATTACCAAATTGAATA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Alternate repeat : GTCTTCCCCGTACGCACGGGGCTAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTACGCACGGGGCTAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.70,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 696-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEQV010000089.1 Pseudoalteromonas sp. PPB1 NODE_89_length_717_cov_3.42712, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 695 29 100.0 32 ............................. GTTCTTTACGTTGTCACCTTCACCGCTGTTGA 634 29 100.0 32 ............................. CTGATTCTCAATTTGTGTTTTATTCATCGTGC 573 29 100.0 32 ............................. GCCACCCATCATGCAGTTTTTCAGAGGTTGCG 512 29 100.0 32 ............................. CTATTTTGCGCGCACCAGTCTTGGTGGGTATT 451 29 100.0 33 ............................. TGTTAAAAACCGGTGGGGTGGTCCTTGAGAGCC 389 29 100.0 33 ............................. TGATCCCCAGATGGCCGAGCAGGTTGCTGTGGC 327 29 100.0 32 ............................. TTTTTCAATCACTGAGAAGCCTGGTTCAGAAC 266 29 100.0 49 ............................. TGATTGCAGTTGCACTATCGGTGACATGGTCATTACAGAACGCAACAAA 188 29 86.2 32 ..........T.CG.A............. GGATTAGAGGTCATAACAGAGGAAGATTACAA 127 29 86.2 32 ..........T.CG.A............. TAATACCCCGCTGCCTGCACTGGCCTATCAGG 66 29 82.8 0 ..........T.CG.A............A | ========== ====== ====== ====== ============================= ================================================= ================== 11 29 95.9 34 GTGTTCCCCGCAGACGCGGGGCTAAACCG # Left flank : GGATGGCACGACGGCACATTA # Right flank : AATTTTTGTTTAATTCGACCAGCCATTTTTACCGTGTT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGACGCGGGGCTAAACCG # Alternate repeat : GTGTTCCCCGTACGCACGGGGCTAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 495-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACEQV010000049.1 Pseudoalteromonas sp. PPB1 NODE_49_length_14711_cov_140.196, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 494 29 100.0 32 ............................. AAAATACATATGAAATGGCAATTTATTTTACT 433 29 100.0 32 ............................. GTCTGTGGCTTTGGTAGTGAGCGTCAGGTTGA 372 29 100.0 32 ............................. TTACTACTTCGCCGCAATCTGGCATTGCTGGC 311 29 100.0 32 ............................. CTAGATATGAGTGGGGATGGCTTCTTGTTTGT 250 29 100.0 32 ............................. TGCCTATTGCTTCAGTGCCAATCGATCCGCAC 189 29 100.0 32 ............................. CATGGCAACGGCCTCTAAGCGTTATGGCGAAT 128 29 100.0 32 ............................. TCATGGGCACCTTCGAATACTGCCCAGTAGAG 67 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 100.0 32 GTGTTCCCCGCAGACGCGGGGCTAAACCG # Left flank : AAACAACACACTTAGCGCCGAACAAATGCAGGCCAAACTTGAGCTACTTGCAAACCAGCGCGCCACCTTCCGCGCATTCTGGTTCGACACGCTCCAGCTGATCATACTCAATGTGCTCTTTCCAACCCTCACCGCACTACTGGGCTATGTGTTTGGCACCAGCAGGAATAATGGGGCTTAGCCAAAAAGGGAGTGTGAAGAGTTTACCTCGGTGTGTTTTGCCGTTGTTGAGGCCGAATGGATGCGCTTGCTTACCTTTCATTAGAGTACATTTTTAGCAGCGATACCACCTGGCTTAATCTTGTTCTCCTTATTAACGATTCTGGCAGCAGGTATTTTTTCCTGCGTGTTGTGTTGCTACATTAAGTCCATGCTCTTTAACAAAGTGATTTAACAGTGAATCAATATACGCCAATATCTCACCTGATTTTGTACCTAATATTTTTGGTAACTTTTGCACTCTCACTTTTCTTTATTAAAAACAAATATATAATTTTAGA # Right flank : GCGTCCGGTTTCGTATCAAGGTCGAGGCCGCCGGTGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAGACGCGGGGCTAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACCCGCGGGGCTGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //