Array 1 1378-4186 **** Predicted by CRISPRDetect 2.4 *** >NZ_QLQJ01000038.1 Streptococcus iniae strain QMA0253 NODE_29_length_28244_cov_123.161_ID_2937, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1378 36 100.0 30 .................................... TTTGCAACGGTCGAAGATGTTACTGCTTTG 1444 36 100.0 30 .................................... CACCTCCTCGAAGCGGTAAGACAGTTGTAA 1510 36 100.0 30 .................................... CCATTTATGACTGGAAAACCGAAGATATCT 1576 36 100.0 30 .................................... TAATGATTTAGTAGAGCCGTCAATGATAAC 1642 36 100.0 30 .................................... GAATGAAGCTGGAGTTTATCCGAGGCATGA 1708 36 100.0 30 .................................... CACCAGTTAACGTTGAAGGTAACATCGTAA 1774 36 100.0 31 .................................... GTTTTCTAACTAAACTCCCTACAGTACCTAT 1841 36 100.0 30 .................................... CCGATGAACACGCAGGTTGGCACATACCAT 1907 36 100.0 30 .................................... TGGATAAACGATAAGAGTAATCACGGATAA 1973 36 100.0 30 .................................... TGAGAGAGGTTATTCATCAGCTGTAATACA 2039 36 100.0 30 .................................... GAATTTTAAATTGGTATAGTCGGAGTTGTT 2105 36 100.0 30 .................................... TTCCAGCTTCTGTGTTAACATCATGCTGGT 2171 36 100.0 30 .................................... CAGTGGTCTGACATGAAAGTCCAAGGAGGA 2237 36 100.0 30 .................................... CATTTGGTGGAGACAAACGATGTGGAATGA 2303 36 100.0 30 .................................... CGTAGCTACTCGGGCCATTTCGATAATCCA 2369 36 100.0 30 .................................... TTCGAAAAGATGACTGAAGTTCAACTCAGC 2435 36 100.0 30 .................................... ACTAGATATGTGATTGGTAAATGTTGCGAG 2501 36 100.0 30 .................................... TTTTTTTTCCCATTCTCCTGTTAAGAATGT 2567 36 100.0 30 .................................... TGACACGTTACGTTTAGAGGCTGAAAAAGT 2633 36 100.0 30 .................................... ATAGTCTTCTGACAGCGTTGCTTCATAGTA 2699 36 100.0 30 .................................... AAACTTATCAGAGATTTAAACAAAGGTAAT 2765 36 100.0 30 .................................... TTACTGCTACTAAAAGAAAAAGATTGTTTA 2831 36 100.0 30 .................................... TATGAGTGTAGAAACAACAGCATCGGCTAT 2897 36 100.0 30 .................................... GATGACGCACTCATATAGATTGCCCCGACT 2963 36 100.0 30 .................................... ATTAGCCCTGCAACACTCGCAATGACCGCA 3029 36 100.0 30 .................................... AAGCAATACGTCGATTCGTTGAGAAATAAA 3095 36 100.0 30 .................................... ACCAACTGTCTGTATCGTGTATATCCTTTA 3161 36 100.0 30 .................................... TCTTGATGAACGTATCGCAAATCAAAGACT 3227 36 100.0 30 .................................... AACGTATTGTATTTATTGCATGGGAGTCTT 3293 36 100.0 30 .................................... TTAAAACTTTCAAAGCCATCAATGTCACCA 3359 36 100.0 30 .................................... CTGACCGAACAAAGAGATTTGAGACTTGTT 3425 36 100.0 30 .................................... CTTTATAGATGCCTTGCTCAGCTAAGAGAT 3491 36 100.0 30 .................................... CAAAAAGGTAAAAGAATGGATTAGTGTTTA 3557 36 100.0 30 .................................... TTCTGTCTTGCTGGAAGCACCAGACACAGA 3623 36 100.0 30 .................................... CTGTCTTGCCACTAATGTAGACATCTCCCT 3689 36 100.0 30 .................................... AGGTGATGCCAAAGGTCAATACGTTGCTAT 3755 36 100.0 30 .................................... CGTAAAAAACTTAATGCTGCAGAAGCTCTT 3821 36 100.0 30 .................................... AGAAAAAACGATGAGTTATTCATAAAAGCT 3887 36 100.0 30 .................................... TTAATTCCTTGGTTGTCAGTGTAATAGATA 3953 36 100.0 30 .................................... CGGTTTAGCTGCTCTTGAGAAGATTGTATT 4019 36 100.0 30 .................................... TTAGTATTAAATATAATATCAACACCTTTA 4085 36 100.0 30 .................................... TACAACAGTACCTATAAGTGTGGCTACACC 4151 36 75.0 0 ................T.....TG..T.T.TTT..G | ========== ====== ====== ====== ==================================== =============================== ================== 43 36 99.4 30 GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Left flank : AACCAGAAGTAAAATCAATGATCGAAAAACTTGCTGCAACTATTACCGAATTAATTGCTTATGAATGTTTAGAAAATGAGTTGGATTTAGAATACGATGAAATCACAGTTTTAGAGCTAATTAAGGCCTTAGGTGTAAAAATTGAAACTCAAAGCGATACGTTTTTTGAAAAATGTCTGGAAATCGTACAAATATTTAAATATTTAACTCAAAAGAAGTTACTAGTTTTTATTAATAGTGGAGCATACTTTACTAGAGATGAATTTGAGAAACTGTTAGAATATATTAGTTTGTCTAGTCAACCAGTCTTATTTTTGGAACCAAGAAAGATGTATGATTTTCCTCAATATGTTTTAGATGAAGATCTTTTTATGCTAACTGAAAATATGGTATAATAGTATTAAGAAAGACAATAGTAATTAAAAGGATCATCAAGATAGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTGTAGAAAAAATTTAGCTACGAG # Right flank : GGCAATATTTCCCATTTGAATAACTTACATATTCGGAAACCGCTTTCAAAAATAGTTTTTTTATGCTATACTGATAAAAAAGCTAAGTGAGGGCATTATGGAAAAAACCTTTTTTATGATTAAACCAGATGGTGTTAAGCGGGGGCTGATTGGTCAGGTTCTTGAACGTATTGAGCGTAGGGGTTTTGTGATTGAGAAGTTGGAATTGCGTCAGGCTGATGCAGCAATTCTGAGAAAACATTATGATTTTCTGGTTGATAAACCGTTTTTTCCAGAGATTGAGGCTTACATGACAAGTGGTCCTCTGTTGATTGGTGTTTTGTCAGGCAATCGTGTGGTCTCTTCCTGGCGTATGATGATGGGGGTTACAAATCCTAAAGATGCCCTGCCAGGAACAATTAGAGGAGATTTTGGGCAAGCGCCAGGAGACGATGGTGGCATTCAAAATGTGGTGCACGGTTCAGATTCTATCGACGCTGCAAGACGTGAAATTGATATCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGTTATTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //