Array 1 7773-6845 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADOK01000004.1 Actinobacillus pleuropneumoniae serovar 11 str. 56153 contig00014, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 7772 28 100.0 33 ............................ CAGTCAATGGAAGGCAATTTAATGCCGTTTGGT 7711 28 100.0 32 ............................ ACAAAAAGAACATTGCAAAACAAGCACTTCCC 7651 28 100.0 32 ............................ TTGTGCCTTGGCGGATTGCTCAAGCGTTTGCA 7591 28 100.0 32 ............................ AAAGATAAAAACGGGATAGTAAGCGTAACAAC 7531 28 100.0 32 ............................ TAGCGATAAAATACATCAAAACCATCGTTCAT 7471 28 100.0 32 ............................ CTGTTCCCTTGCAAATTGTATGCCTGCTTTAG 7411 28 100.0 32 ............................ TTATGCTGATAAAATGACTCTTAAAGAAATAA 7351 28 100.0 32 ............................ ATTTAAAGGGGCAGAAAATACATTTTGTAAGG 7291 28 96.4 32 .................T.......... GTTAGCGTCTTCTTTATCCCCTTCTCCTTTGC 7231 28 100.0 32 ............................ ACAATAAATCAATCGCTCTACAATATCTTGCA 7171 28 100.0 32 ............................ CGGTTTGTTGCTAAATCAGGTGGCGGAAAGCG 7111 28 100.0 32 ............................ TCCAAGCAGTAAATAATTAGCGCCATCTATCC 7051 28 100.0 32 ............................ CTTACGGGTTGGCTACGCCAAACCTTGACAAT 6991 28 100.0 32 ............................ TATCCGATAACCTCTTCCTTAGTTTTGCCACT 6931 28 100.0 32 ............................ TTGCCAATATCGCAAAATACGTTAAAGATCCC 6871 27 89.3 0 .....................C-.C... | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.1 32 CTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TAAAAGTGCAATTAACTGCAGAGGGCTTACAAGACTATGCTCTTATTACATCGGTAACCCCTATTCCGGAAGAGATAGCCGAGCATCGCCGTTACCAAAGAGTGCATAGAAAAGGTCAAAGTGCTATTCGCCGTACCGAGAAATTCTTAGTTCAACAAGGAAAATGGACTGAAGAAATTCGCCAAGAGATGTTAATACATCAGCAGAATCAAAAAGTATTTCCGTACGTAAAACTCAAGAGTGGTAGCACTAAACAGCATTTTGTATTAGCGATACGACAGCTTCGTTTAGCAGAGCCTGTTTCCGGCCTATTTAACGCATATGGATTAAGCAAAATAGCAACCGTCCCACATTTCTAACCTCTTTTATAACCTTTTTTTCAAGAGAATTTATTTTTCCTTTAGAAACAAAGGGTTATAAAAATCTTTCAAAAAAGGGATTTTTTGATTAAAAGCTCTTTAACAACTTGGTATATCTAACATTCTAAAGTAAAATAACGA # Right flank : TCAACTGTATTCCATAAATAACATCGGAGAAAATAATATGAAAAAAACACCTTATATTCCGTCTTCGGATTTAAAGACGATTTTACATTCTAAGCGGGCGAATATTTATTACTTAGAACACTGCCGAATATTATTAAACGGCGGGCGTGTAGAATATGTTACTGATAAAGGCAATGAATCACTCTATTGGAATATTCCTATTGCCAATACCATCTGTTTACTATTGGGAAGTGGTACTTCGATAACTCAAGCGGCAATGCGAGAGTTATCAAAAGCAGGGGTTATGGTCGGTTTCTGTAGTGGTGGAGGAACACCGCTATTTAATGGGACGGAAGCGGAAATCGGTTGTGATTTTTTTAGCCCTCAAAGTGAATATCGTCCGGTCGAATATCTACAACAATGGTGTCGATTTTGGTTTGATGATAACAAGCGGTTAAATTCGGCAAAAACTTTACAATTGGCACGGTTACAATTACTACTTCGAACTTGGAATAAGTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched CTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //