Array 1 648492-646252 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLR010000001.1 Listeria marthii strain FSL W9-0242 NODE_1_length_916233_cov_98.046241, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 648491 29 100.0 37 ............................. TTATACGCCACATATACCCTGTGCATATCCACTATAA 648425 29 100.0 37 ............................. AAACTGAACGGGGAGATCTTGAAAGGGCAGAATGGGC 648359 29 100.0 37 ............................. ATTAAAACAGAGGAAGAGCTGGAAACTTATGGCATGG 648293 29 100.0 35 ............................. AAAGAAGAAGACTTCTCACTTTCTGATAAATTACC 648229 29 100.0 37 ............................. TCGGGAATGGGGATTATAAGTTTGGGTGTTGGTCTGC 648163 29 100.0 36 ............................. CTGCTTAGCTCCATCCACTGATAAACGCGCAATGGC 648098 29 100.0 36 ............................. AAAGTAAATGACGTAGAAACGTCCTCACAACCTCAA 648033 29 100.0 38 ............................. TTTATTTCACTCGAATACTGTTCTACTTTATGCTTAAC 647966 29 100.0 37 ............................. CTTCTACTTCATACGTATCATCCGGGATTTCGGGGAA 647900 29 100.0 36 ............................. GACAGAAGCAAAGCAAGAAGGATACAAAGCAAGTAA 647835 29 100.0 35 ............................. CTCCTTTGGCTCGACACTTCAATGCCATATTCGCG 647771 29 100.0 35 ............................. GGCTTAAAGTCATTTTCAACTGTAGGTCCAAATAA 647707 29 100.0 34 ............................. TCATGACCAGCGCAGTTTTAAAGCGTCGCACATT 647644 29 100.0 34 ............................. GTTCGGACTGCTTCCAAAACTCTCATGAAGCTCA 647581 29 100.0 37 ............................. ATGGCCAATATAATTACTGCTCCTTTTACCTTTAGAG 647515 29 100.0 34 ............................. AAGGTTTTTCGCAGTGTATGCGTTCCAACGCGAT 647452 29 100.0 36 ............................. AGCAGAAACAAACAAGGCTAAACAACAAGTAATTAG 647387 29 100.0 36 ............................. AACAAAGATACGCATTTTGTTCGATGCAATGTAAGT 647322 29 100.0 37 ............................. GACAATACCTTAGACTTAACAGAGACTTCAAAAGAGA 647256 29 100.0 36 ............................. AGTCCAAAGACAACGAATATCACGCCGAACAATATC 647191 29 100.0 37 ............................. ATGTTTGCAAAAGCAATTTTGTCCATTCGAAATTCTT 647125 29 100.0 36 ............................. ATCTCTACGCTGGAAACCGAGAAAAGAGCAAGCATA 647060 29 100.0 36 ............................. CATACTAAGTTGTGGAGGGACAGCGAATTATGAGAG 646995 29 100.0 37 ............................. TCGCTTGAAAATAAATTGGATATTGATAAGTATATAA 646929 29 100.0 35 ............................. TTTTGATTTTAAATGTGAAATTGATACATTGGAGG 646865 29 100.0 36 ............................. GCGGCCAAAAACGCGGGCAAGGGTGTAGCCAATAGC 646800 29 100.0 35 ............................. TTGCGTGCTTCTGTGGAAAATCTTACACTAGAAAA 646736 29 100.0 35 ............................. TGTTTACGCTGAATAAGAAAAGTAGATTCACCAAT 646672 29 100.0 37 ............................. TATATACTCTTCTACGTTCAGTATTCTTTGTACTCAC 646606 29 100.0 34 ............................. TCCGATGAAGAGGTTTCGACTTCCACGGAAAATT 646543 29 100.0 38 ............................. AAAAGACGATGTAACCGAACTTTTACTAGGGAATGCAA 646476 29 100.0 37 ............................. AGCGCCCGCACTGGGTCTTCTTTCGCTTTATCAAACC 646410 29 100.0 35 ............................. AAAAAAGAGTACCTGGGAAGCGGCAACTTCACAAA 646346 29 100.0 36 ............................. TTTGTCCAAGCTAAAAAGAATAAACCAGTTAAGCGC 646281 29 86.2 0 ...............C......CC....C | A [646256] ========== ====== ====== ====== ============================= ====================================== ================== 35 29 99.6 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATAATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAATGAGTTTGAAGTTTTTTAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCAATTTTTAAGAGGTCGACAAAAATAGTGGCCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : TTCCTCTCAACATCCAAACTCCAAAAATAAAAAAGACCTGGACCCCAATCCAAGTCTTTTCCCATACCACCTAAACCAACAAAACCACAACCAACGCCAAAAGCGCCGGCAAGCCCTGCTTTACCAAAATTCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTTTCTGCCATTCCTGCTCCCGCAAAAAACAATCCCCACACAAGCCCAGCCGTAAGAAACCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTCTTATTCGCAAGGAGTTCCTTCTCGACACCGAACGTTTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATGAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 665972-664654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTLR010000001.1 Listeria marthii strain FSL W9-0242 NODE_1_length_916233_cov_98.046241, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 665971 29 100.0 35 ............................. AAGACTAAAGATGGTGGACGTCCGGGGGCGGTTGG 665907 29 100.0 36 ............................. AGACATAGATGCACTAACCATGGCGGTCGCAGCTAA 665842 29 100.0 35 ............................. TAGCAAGAAAGCGAAGGGTTTAACAGGGTTAGAAA 665778 29 100.0 34 ............................. ATGATTCAATATAAGAATAACAAAAGTTCAAAAG 665715 29 100.0 35 ............................. GTTTGATTGAAAAAATAAAAGAAGTCGCGGACGTG 665651 29 100.0 34 ............................. GTCATAGCTTGAATTTCTTTTTTAAACCGTTCAG 665588 29 100.0 35 ............................. CCTGTATGAACTAGTTTTACCTTACTCTTTTTTAG 665524 29 100.0 36 ............................. GTATAAGATTAAGTGATTAGTTAACGCTAGAGAAGC 665459 29 100.0 36 ............................. AACGCACAATATCCGGGCATTAGCTTCGGTTTCATG 665394 29 100.0 36 ............................. TCCAGTAGCACTGGATGCCAAGTTCGAAGTATTTCC 665329 29 96.6 35 ..............G.............. AACAAGAAATTTACTGCTGGCTTGACCAGCTCAAG 665265 29 96.6 37 ..............G.............. ATCTGACAATGAATCGGAAGGCGTTGGACTACCTTGG 665199 29 96.6 37 ..............G.............. AGTCGCGCAATTTCAGCAAAATTTCCCGCATCTTCTG 665133 29 96.6 35 ..............G.............. ATAGAATGGGAAGAAAGCTATTACGAATCAACTAT 665069 29 100.0 34 ............................. GTAATTAATTCAGTAGCTGACTTAATACGTTCAA 665006 29 100.0 36 ............................. AAAGTCAGCAGCCCGCTCGTATATGCAATAAAGGGT 664941 29 96.6 34 ................A............ TTGGCTATGATGTGATTATGTTTAGATAGCCATA 664878 29 100.0 37 ............................. TTCAAAATGGTAGTGATTGATGAGCTTTCTTCATTCA 664812 29 96.6 36 ................T............ GAAACCTTTCAAAATAAAAAGAATGCGCCTGTCATC 664747 29 96.6 36 .......T..................... AGTAATGGGACATCAGAGAAAAATTATGTGGAAACC 664682 29 96.6 0 ...............C............. | ========== ====== ====== ====== ============================= ===================================== ================== 21 29 98.7 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTATTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGCCTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGACCTTCCAGAAGACAAACAATTCGACAAACTAACAACCATTTCTATCGGCCGTATCTTAGGCCGCGCAATCGAAGGCGTTCAAGAGAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGCAACTTTTAGAGTTGCTGTTTTTTTGTGTTTGGTTGTTTGTCGACCTTTGGTAGTGTGAAAAAGGCTGGGGATCGACAGAAAGGTGAGAATGGTTGGAGTGAGGGGAGTTTGGTGCTTTTTGGTTTTGAAAACCATGTAGAGAAGGATGGATTTTCATTGATTTTTAGTCGGTCGACAGAAATAGGCTTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : CATTTCCAATGCCTATACAAAAAAGCCAACCAATAGGATTTAGGCTTATTTTTTATCCCCCCGTTAACAATTCCGCAACAAACACATCAAAAACCCCCAATTTCCTCCGAACCTCCAACTACACCACACGCCCAACCTATGCTAAACTCAAAGAGAAGCCAATACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATTCTGGCAAGCTGCTCCTCTCCAAGCGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACTATCACCATCCGAGCAGATTACAATATCCCGAAAAACATGGAAGAACTAGCAAATAACAGCAATAACATAGTCAAAGTAAAGCTGCTGCAAAATAAAGACATTGGCAAAGAAAGCAACACAATTAGTGAAGTAGAAATTTTAGCTTCCTACAAAGGCGACCTAGAAAAAGGTGATAAAATAGATATTTCAGAACCATGGTACTTAAGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //