Array 1 63251-62323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTNR01000044.1 Pseudomonas aeruginosa strain AZPAE15029 AZPAE15029_contig_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 63250 28 100.0 32 ............................ GCGAAGAAAAAGCCCGCCAGATAGGCCAGGAA 63190 28 100.0 32 ............................ TGGACGCGGGCGTCCTGGCTGATCAGGCTCCA 63130 28 100.0 32 ............................ CAGCGGGATCAGCGACCAGCCGATGGCCCGCA 63070 28 100.0 32 ............................ GTCGAGGCTGTCCAGCCGCAGCACGCTGCCGC 63010 28 100.0 32 ............................ ATGCCGCCGACCTGGTGCTGGTCGACACGGTG 62950 28 100.0 32 ............................ TTGACGACCAGCCAGAACCTGCGGCCGTTGGC 62890 28 100.0 32 ............................ GAGGAGTCCGAAGACTTGTCCGTGTCGTACCA 62830 28 100.0 32 ............................ AGGAACGTCCCGTCTCAGTTTGGAACGCCCAC 62770 28 100.0 32 ............................ TCGCGGCCCTCGGTCTGCCAGCGGAAGCCATG 62710 28 100.0 32 ............................ TTCATCAGGATGCCGCCAAGGGTCCGCATAAT 62650 28 100.0 32 ............................ ATGAAGGCCAGCAGGCCGAACACGATTGCGAT 62590 28 100.0 32 ............................ TCGAGCAGCGGCCCGAGGAGTCCGAAGACTTG 62530 28 100.0 32 ............................ TGGAGAAAAGCAATGCGAGTGGTGCGAGGCCA 62470 28 96.4 32 ....................T....... AGACAATCCGGACCTGCCGCCCAGGACGATCT 62410 28 100.0 32 ............................ TGCAGCGACTGCACCTTGGCTTGCTGCCGGTC 62350 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 16 28 99.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCGAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGGCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAGTCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 1694-105 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTNR01000015.1 Pseudomonas aeruginosa strain AZPAE15029 AZPAE15029_contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1693 28 100.0 32 ............................ TGGCTGATCAGGCTCCAGAACGGATCGTAGAC 1633 28 100.0 32 ............................ TTGATATGCCGGTAGAACGTCGGGCGAGACAT 1573 28 100.0 32 ............................ TCGAACGCTGCTGAGCGCCGAACGCATAGATG 1513 28 100.0 32 ............................ AGACCGAGGACGGCTCGAAAACTCGGATGATC 1453 28 100.0 32 ............................ TTCGACGGCCACGCCTCAGCCCGGCCCAGGCC 1393 28 100.0 32 ............................ TTATTGAAATCCTCAGCGGCCTGCACTTGCTC 1333 28 100.0 32 ............................ TGATCACCCAAGCGTGCGTATCGCGGCCATCC 1273 28 100.0 32 ............................ TGGGTGTCCAACATCGACGGGTCGAACTGCTC 1213 28 100.0 32 ............................ TGCGTAGATGCCGCGATCATAGCGCGCCCTAC 1153 28 100.0 32 ............................ TTCGGTACTTCTGAACCATACGTCGCCGCATA 1093 28 100.0 32 ............................ AGTCATCGATGAACGACGAGCCGGTCAGTGCC 1033 28 100.0 32 ............................ AGAAGCTGGAGCGACGGCTGGCGGCAATTCGT 973 28 100.0 32 ............................ CCGGACGTTCACGCTGGTGGTGAGACCATCCG 913 28 100.0 32 ............................ TGGCTGTCGCTGCGCTGCTGGCCGCTGTGTAT 853 28 100.0 32 ............................ GGCTGGTCCCAGAGCGGGTCGACGGCACGGTC 793 28 100.0 32 ............................ GAACCGCGCGTTCATTGCTGAAGGCCATCGTC 733 28 100.0 33 ............................ ACATCAGCGCCGCGGTAGCCGATGCCGATATCT 672 28 100.0 32 ............................ ACCATCCCCGGCCACGGGTTGCCCGACACCTG 612 28 96.4 32 ........T................... GTTCCATCCGGGTAGGTCACGTCCACGTCGTA 552 28 100.0 32 ............................ TGGAGAGTGACCCGCTCAAGACCGAGGCCGAG 492 28 100.0 32 ............................ TGATGCCGGACATGGGACGTTTCGCGGGAACC 432 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 372 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 312 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 252 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 192 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 132 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.9 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTCCCAAACATCCGAATATAAAAGTTCCTACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 270179-271583 **** Predicted by CRISPRDetect 2.4 *** >NZ_JTNR01000007.1 Pseudomonas aeruginosa strain AZPAE15029 AZPAE15029_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 270179 28 100.0 32 ............................ AGTGGGCCGAAATCGGCCGATGAGTTCATCGG 270239 28 100.0 32 ............................ GCCCAGGACGATCTACTACTACGGCATCCCGG 270299 28 100.0 32 ............................ TGTCGCAGATCGATCGCGAGGACGCCGATGGC 270359 28 100.0 32 ............................ AGCAGCAGATCATCGACAACGCCCGCGCTTCT 270419 28 100.0 32 ............................ GAGAACGATTCCGTCTTGTTGGAGCTTTCTGT 270479 28 100.0 32 ............................ CGACGAGCAACTGCGCTTGCGCGTGCGTAACC 270539 28 100.0 32 ............................ GGAAGGCTGGCGCTCGAACGGATGTGTACAGG 270599 28 100.0 32 ............................ TCCGGATCACCAGGGCGACAGATGGCCACCTC 270659 28 100.0 33 ............................ CTCTGGCGGTAACCTTCCATGATCTGCGCAGCC 270720 28 100.0 32 ............................ TGCATGCACATCGGCGAACTGCTGACGTGCTT 270780 28 100.0 32 ............................ TGGCGCCGCCCGATTTCACGTAGCTGCTCGAT 270840 28 100.0 32 ............................ TGATATCCAGCTGCTCCAGGAACCACTGGCGG 270900 28 100.0 32 ............................ TGATTTCGAAGGCCGCGGGCGACTGATCCGGA 270960 28 100.0 32 ............................ TGGATCAAAGAACGCATTCTCGGCACGTCGAA 271020 28 100.0 32 ............................ TCCTTGCCGGGCGCGGCGGCGAGCAGTTCGCG 271080 28 100.0 28 ............................ GAGTGTGAGGCCGGGCAAACGGATTTGT 271136 28 100.0 32 ............................ TTGACGGCCAATGCCGGCTTCGACTTAGCTCG 271196 28 100.0 32 ............................ AGCCACTCGCGGGCCAGCTCGGGCGATAGCAC 271256 28 100.0 32 ............................ GTGTCGCCCAGCACCGTTCAGCGCTACTTCAT 271316 28 100.0 32 ............................ TCGATCCACACCCGCGAGGACGTGGCCACCGT 271376 28 100.0 32 ............................ AGCAATGGAAAGCAGCGATGTGACCCGACCCG 271436 28 100.0 32 ............................ TGCAGGTCATAGGCGTATTCGAAGGACAGGCT 271496 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 271556 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.8 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTGGGGTGGATTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //