Array 1 180877-181924 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDTD010000009.1 Pseudomonas aeruginosa strain 12231 NODE_9_length_246593_cov_45.575061, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 180877 28 100.0 32 ............................ AATCGAAAACATCAGCGTCACAATCAATGCAC 180937 28 100.0 32 ............................ TGATGGTACTGGGCTGGTCGGCTCTCTTCTGG 180997 28 100.0 32 ............................ AGTCCGACGTGGTGGCGTCCTGGTCCATAGCC 181057 28 100.0 32 ............................ TGAAGAAGTCGTACACCGGCCTGACCGGCACG 181117 28 100.0 32 ............................ GTCAAGCAAGCCAAAGCACTCTACGACGCCGG 181177 28 100.0 32 ............................ AGTACCACCGCCCTCCCCTGAGCCGTCACCAC 181237 28 100.0 32 ............................ ACTCGAAGAACTTCACAACCGCAGAAGTCATC 181297 28 100.0 32 ............................ TTTTCCTACGGAGCAGGGCGATGCTGGTTATT 181357 28 100.0 32 ............................ AAAGCGGGCATGACGTTCAACCCCAACAGCCG 181417 28 100.0 32 ............................ GCGACGAGCCGGAGAACCGCAAGACCTTGGGC 181477 28 100.0 32 ............................ TCGGGACGATCTCCAGCAGGCGGATCAACTGG 181537 28 100.0 32 ............................ CCGGAATCATCTCGCCGGCCGTCTTCGTACTC 181597 28 100.0 32 ............................ CCGGACGCCCCTAATCTGGAGGGCTCCTGGCA 181657 28 100.0 32 ............................ TTTCCCCGCGAGGCATAGCAGGGATATCTTGT 181717 28 100.0 32 ............................ TACAAGCAGATCGGCGAGCTGAGCGGCAAGGA 181777 28 100.0 32 ............................ TCGTACTGGTCGAGATTTCCGATTCGGAAGCC 181837 28 100.0 32 ............................ TTCGACGCCGCTAGGGTTGCCGCATCGCCGTC 181897 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 18 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 191606-190798 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHDTD010000009.1 Pseudomonas aeruginosa strain 12231 NODE_9_length_246593_cov_45.575061, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 191605 28 100.0 32 ............................ AAACAGGTGATGAACGAGCCGTGCCGAGGCCC 191545 28 100.0 32 ............................ TGCAACTCGTAGCAGGTCGCAATCCACTCCTC 191485 28 100.0 32 ............................ GGTGACGCTGCACATCGTCGCCGCCGACTTCA 191425 28 100.0 32 ............................ AATCAGATCCCTCGCCGAGCGGCGCATCATTG 191365 28 100.0 32 ............................ AAACTCATCAGGCACCGGCAGCGCAATCAACT 191305 28 100.0 32 ............................ TGGCCGCTCGACCACGCCGGCATACTCACCGC 191245 28 100.0 32 ............................ AGCCACTGGCATTCGAATGGGCCGGCCGGGAA 191185 28 100.0 32 ............................ ACCTCAAGCGGAAAGCAGATCGGCCGGACGTT 191125 28 100.0 32 ............................ TCGACGAAGCCGAGACGTTCACCAGCGCCCAT 191065 28 100.0 32 ............................ TACCACCAGGGATCGCCGTCGAACGGCGACTT 191005 28 100.0 32 ............................ TAACCGCGCCCTGGCGCATACACACACTGGAG 190945 28 100.0 32 ............................ AGGAACGCGACCAGGGCGCAGACGGCAACAAC 190885 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTCGGGCGA 190825 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : GAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTGGGAAGGTTGATGGTTTTTTGGTCTT # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATAAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCACCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCACCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //