Array 1 1330-965 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQL01000054.1 Lactobacillus sp. PFC-70 PFC-70_contig_63, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 1329 37 100.0 29 ..................................... TATCCCGTAGTTTATCAGCGCCAGCTTTA 1263 37 97.3 29 ....................................G TGACATTCGTAAAAATGGGCTCGTACAAA 1197 37 100.0 29 ..................................... CTGGGCAGACGATTTCTTCGGACTGACCT 1131 37 100.0 27 ..................................... CCGTTTTCCAATTAAAGCAATCCACTT 1067 37 100.0 29 ..................................... CAACAATGGCAAATATAATACCATTCAAG 1001 37 73.0 0 ...........................AAACGTTAGA | ========== ====== ====== ====== ===================================== ============================= ================== 6 37 95.0 29 GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCCC # Left flank : TAGTGATGGTGTGAGTGAAAAATATAGTTCTGGAATTTACAAGCAACTTGAAGCTGTATTGACTGATGATCAGCGTAAGTCCATAACTGACATTAACAGCCAACTGTATACCTGTGTTCAGAAATGCTTATTCATGATTGATCTACCTTTGGAAGTTACCTACGATTGGGATTTGAAGAAGCTGTTCAAGTACTGCAAAATTCACTTTAATGCTGATACCATGCAGAACCCATATGCTATAATTGAATCAATTATTAAAATTCATTTGGAGTGTGGATTGAAGTCTGCAGTTGGTCTAACTAATGTCGCTCATTATCTTAATCAGCAGCAATTAACTGACTTATCCAAGCTTACAAGTTCCACAGCGATCTCGACATTATTAGTAGAATTCACAGATATGAAGTCACAGGAGCTTTATACCAATTGCGATTTCTACTACATTGACGAGGACTTTGTTGATTGGCATTCATAACACATTAAAACCTGGTTATAAAAAATCG # Right flank : TTTTAAAATTAATCCGAAACTATTTGAACAAAAAAGATCAGCTTTCTTTAAAATGGTGTTTACTAAAAATACATTTTTAAGAGCTGATCTTTTGTCTAGAATCCGCCTTTAAATAACGATTAGGGTGTACCCTAAATGGACAAAAAGCAGTATAATCAACTTATGAAGAAAAGCTTAGGTTCTGCTTGGGATAACAAGCAGTTCTTTGTTTTTGTCAAACTGTCTAATTAGAGTGTCTAAACAGAATGTAGTAGGGTGGAGGAGACTGATCCTCTGAAAGGAGAGTTATTGATGAAAGTTGGTTATGCGCGAGTTAGCTCAACTGATCAAAATTTGGCCCGCCAAATTAAAGCCTTGAAAGTGGCTAGATGTGAGAAAATCTTTGAAGAAAAACAATCGGGCAAATCGACCCAAAATCGACCAGAATTACAGGCGGCGATTGCTTATGTGCGGCAAGGAGATACATTAGTAGTGGCCTCATTAGATCGGCTTAGTCGAAA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAAGGATGTTAAATCAATAAGGTTAAACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 2877-2481 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQL01000061.1 Lactobacillus sp. PFC-70 PFC-70_contig_76, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2876 29 96.6 32 .................T........... TCTTTGACAATGGGCATCAAATCTCGAAACTG 2815 29 96.6 32 ...........................G. CATACGATGAACAAAATCTACTACAAGCATTT 2754 29 96.6 32 G............................ CCCACGGCGTAAGTTTTCGGGTGGCCGATTCC 2693 29 100.0 32 ............................. CACAAGTTCCTTATTTATCGCCCGCCAAGATG 2632 29 100.0 33 ............................. GAACCGTACGCTATTCGAGATGAGACCCGGGAT 2570 29 100.0 32 ............................. GTGCCGCGAGTTGGTCAAGTACGCCACGGCAG 2509 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 7 29 98.5 32 AGAATCACCCCTGCATACGCGGGGAATAC # Left flank : AGGGTCAACTGGACCTGGGGCATCATGGCCATCAACGGTTCATGCCACTTTTCAGTGAACCCCTTCCGCGGGGGCAAGTCCCCGCTTTTGCCTTTGCCCGGATAATAAAAGTCCAGGGGCATTACCGCAATCCGGTCACTCTGATAGAACTGGTCGCGTGTCACGCCCATCCAGTCCCGCAGCCGGTCTCCGCTCGCGTCATTGAAATAGGTCTTGGTCTGCTGAGCAATTCGTCCCGGTGCCTGACTAATGACTAAAATCGTGGCACTCGGTAACACATGAAATAACGGGTCCCACCCCTGTTTGGTGTACGCCGCATTCTCCGGATCATTCCGAATCGCAGTTTTAATGTCCTCAACGGTTGTGATAGACAGCCCCTCCTTGGTTTGCGTTACGGCTATTGTACTGCATTTGTTTGTGGTGAATCAATTTTGATGGGGTTACCCCCCCCACACATATGGGGAATATAGCATGCCAAATTGAAACGTCAAAATAGTGCA # Right flank : ACTAAACAAATCCTACCACATCAACGTTTCAAAAAACACAAAAGTCATTTTTTTATCACTTCCATCCCAATCGATGACCACACAAAATTCAGTTCATAGTACTCAGACTATTATTCAAAGCCCAAACTAGCTAACAACGCCAAAAGCGCACCTGCCCAACCTCCGGCAAATGCGCTTCCTCACTATAATCCTATTCAAATACCATCTGATTCCGGTACAACTCCGCATAGAAGCCGTTCTCCTGCAACAACGCCGCATGGCTACCCTGCTCGATAATTCGACCATCGCGCAGGACCACGATTTTGTCCGCATTCAGGATGGTCTTCAACCGGTGCGCAATCACAAAACTCGTCCGGCCCTGGATCACATTATCCATCGCCGCCTGAATTCGTGCTTCCGTCACCGTGTCCACGTTAGAGGTGGCTTCATCTAGAATCAATAAGCGCGGATTCGTCAGAATCGTTCTGGCAATCGACATCAACTGCTTCTGTCCCGCCGAG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGAATCACCCCTGCATACGCGGGGAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-10.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,0.74 Confidence: LOW] # Array family : NA // Array 1 2507-821 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQL01000057.1 Lactobacillus sp. PFC-70 PFC-70_contig_80, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 2506 36 100.0 30 .................................... GCGAGCAAGAACAGCTAGGCACGGTCTCAA 2440 36 100.0 30 .................................... ACTTAACATCACGTCAACAGTTGATTTATG 2374 36 100.0 30 .................................... AAGTAAACCGATACGCCGCAATTCGTTATC 2308 36 100.0 30 .................................... CATAGAAATTAAGGTCGTCCCTGAACCTGA 2242 36 100.0 30 .................................... TGCCTGCTGGGGATAATGACGTCGTCGTCG 2176 36 100.0 30 .................................... GGATCGTGACGACTGTTATTGTTGGGGTAG 2110 36 100.0 30 .................................... GGCATGGTTGATTGGCATTACACCGAATAT 2044 36 100.0 30 .................................... GCTTTTCGCCGCGCAAGACTGAACGCAACG 1978 36 100.0 30 .................................... GGACACCAACGCCATTTTCCCAGGCGTAAA 1912 36 100.0 30 .................................... CACTTGGGGTCAACTTAATCGGAGTATTGG 1846 36 97.2 30 .A.................................. AAGCACTTAGCGGGTCACTCAATCGGTCAG 1780 36 100.0 30 .................................... ACAATGAAGTTGCTTTTGAAAAGAAACTCG 1714 36 100.0 30 .................................... GCAACTTTTTTACGTTCTGTTTGTTGGTGG 1648 36 100.0 30 .................................... TATCATGACGCGATGGACGTAGCCGAATTT 1582 36 100.0 30 .................................... TCGGCCTCAGAAAAGAACCCAATATTTTGA 1516 36 100.0 30 .................................... AACGGGACAAGTCACAATCGTATTAATCGT 1450 36 100.0 30 .................................... ATATTTTTAATGGTATATACCTTTTTACCG 1384 36 100.0 30 .................................... TCGCAACACCGAATGATCTAGTTCAGCTAA 1318 36 100.0 30 .................................... CTTCCTCCTATTTCCATTCAATCGTGTGAC 1252 36 100.0 30 .................................... CGTCCATGGTAGCGGGTTTTCCGTTCCCAT 1186 36 100.0 30 .................................... AAAAGGTCATTGCATCGAAGCGTCTTGTCT 1120 36 100.0 30 .................................... AGCGAGTGCATTCACTGTTCGTTTGGTATT 1054 36 100.0 30 .................................... TAATAGAAGAAAGATAGTTCCAATTAGCAT 988 36 100.0 30 .................................... AAGAATATGTTTCGCGATGTGCAGGACATG 922 36 100.0 30 .................................... GAAGGCCAATCCATTAGCACAGGAAATTGC 856 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 26 36 99.9 30 GCTTGAACCTCTACTGATTTGGTACTTATCTAAAAC # Left flank : CGGACCACCGTCAAGGGCATCATCTACAACCCTGCCGGTGTGCCTTATGACTTCACTGACGCCTACATTGGGAATAACTAAGGCCAGCACAAAAAAGGCAACGATCTTTAGGTCGTTGCTTTTTTGTACTCATCACTATTGAGAATCGTAAAATCCAGAATCTGACGACGATATAAAAGGCTAGCATATATAACTTGAATCTCTACTGATTTGGCACTTATCTAAAATTACCGACCATCGTCGTAAATATTCTATCCGTCTTTTCAACTCATAATGATTATTCAAATTCTTAATAACTAAGGTAAAGCAATCTATTTTATTATCGCACAAAACGCTTAAAATAAATCGCTCAATAGCCTGACTACTCAACAATTTCATAGTTCAAAACTCAATTTACTAATTATCTAAGTAAAAAGATAACGCACAATCTGATCACTCGGAGTTCTAGCAGTCTAATACTTATCTAAAACAGCACAAGCTGACCAGCCCGGTATCTCAGG # Right flank : CATTATTTACACATAATCTTCTCATAATATAGAATCCTACCAAATCACAAAATCACTATCGATGTAGGAGTAATCGCATTTCGAGAAAAATTCTCGTCTATTACAAAATGAGAATTCAATAATAACAATAGATAAATCAGTTGTTGCCACTAATCTCACCAATTGATTCAACTGGTCGGCATTAAGATAATGACTAAGATTGGTTACCGCAATTACACGATGATCACCTAACTCCATTTGAATCTTTATCAACGTCTCAAGTATATCATAGGCCGTCACCTGTGCCGTCATATCAACTTGCAGACCACTAAACTTAATTAGCTTTGAAATATCGGGAGATTCAGGTAATTCTAAGGGAACATCCATTAAGTAACTATCGCTTAAAATCGTCCCCAATAACTGACGAAGATTATCGCTTAATTGTACAATTTGTTCTTGCGTCATTGCCTGCTCGACTCTAGCCTGCAGCTTACGTTGAAATAGCTGGTTTAAATTAATAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTGAACCTCTACTGATTTGGTACTTATCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.40,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 1 13296-13085 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQL01000025.1 Lactobacillus sp. PFC-70 PFC-70_contig_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 13295 28 100.0 33 ............................ CTCACGACCTCGCCAAACGTGCAGACGCGTAGG 13234 28 100.0 33 ............................ TACGCAGATTAGGGAGTTGAAGGTGCGTCAGTA 13173 28 92.9 33 ..........C..A.............. CAACAAAATAGCTCATCGAAGTTTTTATATTTG 13112 28 89.3 0 .............A..C.........C. | ========== ====== ====== ====== ============================ ================================= ================== 4 28 95.5 33 GTGTTCCCCGTGTGTGTGGGGGTGATTC # Left flank : ATCTCCATCAGCTTACAAAGCAATTGGTGACTAACTATGATGTGATCAAAATCGAAGATTTGAAAACCAAAAATCTTCTCAAGAATCACAAGTTGGCACGTGCAATTGCAAACCAGAGTTGGCGCGAGCTACGCTCACAGCTTGAATATAAATGTGCTTGGTATGGAAAACAGTTAGTCACTGTTAACCCACGTAAGACAAGTCAAATATGTTCAACCTGTGGATATGATGATGGTAAACACACCTTAGATATTCGCCAGTGGACGTGCCCACAATGTGGCACGAACCACGACCGCGACATTAACGCGGCGGTGAATATCTTAAAGGCGTAACCGACTGAAATGGGCTGGAACAGCCCTTAGTAAAAAGCCGTAACCTCTACGTATCATTCAAAGAGTGATAGGCAAGTATGCGGTGTTCCTAGAAGCCCGGGAATTTATTCCCGGAGTAGTTCACGGGTTGTCGATTTAAGAATGTTGATTTGGCGGCGTTTGTTTAGT # Right flank : TCATCAAAAAAGGCCCCGCGATTGCGAGACCTTGTGTTCTCCGTGTGTGAGGGAATCTAGTTTGATGCCTTATTAAGTCGTATGCCGGATTCTCTTTGAACTAATTTGTTTCAGGAACTCGTGAAGACGTGAAGTGTCAGCATCACTCAGTGTGCCAATGTAGCTAATTTTTGTGGTCCCTTTAGTAAGCGAATAAATTTGATAAGCGTCAATCCAGGAGTGTTTCTTTAACCCAGTAGTCAGATAATCCTCGATTTCGAAGTACCACTGTTTCATGAACTTAGACTTGCCTGTGTACTTAGTAGTGATGTCAAAGAAGAAGATTTTGTCTGATGTTTCACGGAGGATGTAGATGGGCCGACGCTTTCCACCAGGTATTTGGATAAAGCGGACGTAAGCAGTCGCGATAGTCTTAGTCATCTTTTTCTGCCCAATCCTTTATCTCTTCTGGTGTTTTTAAGTCTTTAACTGGCCAGTCGGTGGTTAGTTTCTGGATAGCC # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTGTGTGGGGGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,1] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.60,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 17112-16840 **** Predicted by CRISPRDetect 2.4 *** >NZ_PZQL01000025.1 Lactobacillus sp. PFC-70 PFC-70_contig_38, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 17111 28 96.4 33 ...............G............ CTAATTAAAACTTTTAAAAAAAGTGACGGCACT 17050 28 100.0 33 ............................ TAGTGGTGGCGACCAGAGCAACAAAAACAATCA 16989 28 100.0 33 ............................ TATCGCATATGGCTTAGCTGATGATATCTGGGA 16928 28 92.9 33 ..........C....G............ CGGTTGAGTTTGCTGACGCATAAAAAGGACCGG 16867 28 89.3 0 ...............G......G..A.. | ========== ====== ====== ====== ============================ ================================= ================== 5 28 95.7 33 GTGTTCCCCGTGTGTACGGGGGTGATTC # Left flank : AAGGCGGAAGACCAGATGGCGCAGTGGCAGGCAGATGGCGTCAAACCGGACGTGATCGTGGTCGATCCACCACGGAAGGGCTTGGCTCCTAGCTTGATTGAGAGTGCCGCTAAGATGGCGCCGCGCAAGGTGGTTTACGTCAGCTGTAACCCATCGACGCTGGTCCGCGACGTGGCCCACTTCGAAGAGCTGGGATACGCAATCGATGGAGATATTCAACCCGTCGACCAGTTCCCACAGACGCCGCACGTGGAATCGGTGACGGTGCTGAAGCGAAAAGACTAAGGTTATGTCAAAATAAAGCGTGCTCGCAGCATCTGGCAATTGTCAGGTGAGCGGGCACGCTTTTTGAGTGGGATGGATTATTGGAATACTTGTGAGAGATTGTGTTTTTGGAGACCATGCATTTGCCGGCTAACTCGGTGGCAGGTATAATCGTAAGTGATAAAATTTAGTAGATAGCCGTTTTATGAATGCTGATTTGGCGGCGTTTGTTTAGT # Right flank : TTCGCAACAGCGAATTATTAAATGGCGTCTTTGCGTCTACGCGTGATGGTGCTATTTTTTAGGCCATGATATACATAATTCAAATTGAAAAACGCTTAGACACTGACTAAAATGAAGAGGGTGATATAAAGGGAGTGGTGAAATTTAGCGGAGATGATGAAATGATAACGGTAATCTTTGATCAGCGCGGATGCAAGGCGTTTTTCAAACGCTACGCGCATCAACAAGCAATCATTGAACGACAAATTTCAGATGCCGTTAATCGGGAAATCGCAACTGGAATGACGAAAGTCAAGCTGGCAACCCGTACTAAGGTATCTGGAACCTCCTGTTACGAATTTCGTACAAACTTAGGTAAATTGGGATCTGCGCGCCTAGCTTTTATACATCAAGGTCACCGTGCCACCGTAGTGTTTATCAGTCACGACTTACAAAAGTCCACGTTTAGTCACGAGCTCATCCAAATCCTGGGGGTGACTAAATGAAGTGTATCCCCTTGA # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGTGTGTACGGGGGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.90,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //