Array 1 52625-54881 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKI01000030.1 Corynebacterium spheniscorum strain CCUG 45512 contig_0000030, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 52625 29 96.6 33 ............................G TACCACGGCGGCACCGTGTTCCACTACATCGCG 52687 29 96.6 33 ............................T GGATTTTGCGAGTGCACCTAGCTGCACCACACG 52749 29 100.0 33 ............................. TGTGACCCGTGAGCTGGAGGCCGTGAAGGCGCG 52811 29 100.0 33 ............................. TGCTCCAGCATGCCCTTGAACTTTGCGAGCTCT 52873 29 96.6 33 ............................G AAACGTAGTCCTCCCACGAACGCTGAGTGCCAA 52935 29 96.6 33 ............................T CCGAGACCAAAACCAGCAAGGGGAAGCGCTCTA 52997 29 100.0 33 ............................. ATTCACCACCGCGCGGGCGCGGCCCCGCCCCGG 53059 29 96.6 33 ............................G GCACCCCGCACCCGGTGGTTAGGCTCCCCTGGG 53121 29 100.0 33 ............................. GTGGCGACCCCTGCGATCAGTGGCATGGTCACC 53183 29 100.0 33 ............................. CCGGGCCCCGGCGTACGCACGCCCCCGGGCGTG 53245 29 100.0 33 ............................. CTCCATCACCACATCCAAATCAGCCTTCCTATA 53307 29 100.0 33 ............................. GCCCGTAGCGGGGCCTAGATAGCCCGTACACGC 53369 29 96.6 33 ............................G ATTATCGCTAAGACTGTGCTCCCCACCCCGGTG 53431 29 100.0 33 ............................. TCCGGATCCCGATACGCGGCAAACGTGCCTGGG 53493 29 100.0 31 ............................. TGTAGCGAGGAATCCATCAAAGCCATCATTA 53553 29 100.0 33 ............................. CCCGCACCGAGGGCTAAACTAAGCGCCAACAAA 53615 29 96.6 33 ............................T AAATGTTGTAGAGCCGGTACGTTGATGTTTCTT 53677 29 96.6 33 ............................T CATTGCCACCTCACCACTCACCCACATCAAGCC 53739 29 96.6 33 ............................T ACGAGGAACCGGAAGCCTTCATCACCGATCTAA 53801 29 100.0 33 ............................. GGATCATCCGGGGTGCCGATTACCTCATAAAAT 53863 29 96.6 32 ............................A ATGAAAGTCGCTAAAGTTGTAATGAGATATTT 53924 29 96.6 33 ............................G GACCAACCGCGCACCGGCTCTAAGTCCAGGGAA 53986 29 100.0 33 ............................. CCCATCAAGGCCTTGGGCAACAGCATCCACGAA 54048 29 96.6 33 ............................G TGACTTCGTAGAAGTACCCCTGGGTGTTCTGCG 54110 29 100.0 33 ............................. GCTAGGGTGGGGGGTTATGGCGTGGGCAATGCA 54172 29 100.0 33 ............................. GGGAATACACCACCCTAAGAAAGGAACAGCGGC 54234 29 100.0 33 ............................. GGTGGACACCTCTACACCGGCGCGGTACATACA 54296 29 96.6 33 ............................G CCCCGGGGGTGAAAGCATGAATCACTAGAACTG 54358 29 96.6 34 ............................G CGGATGCCTGAGGTGATGGCCGCAGCGCAGACGC 54421 29 100.0 33 ............................. AGACATCCCTCATCGCGCGGTATCTCGTCTGGA 54483 29 100.0 33 ............................. GTCCGAGAGGCCGCGCTTGACGGGTACAAAATC 54545 29 96.6 33 ............................T AAGTGGTGCGTTGCTGTAGTCCGTTTGGCCCCC 54607 28 96.6 33 ........-.................... CGAACATTAACCAGATAGCGGAAGCGGTAGACG 54668 29 96.6 33 ............................G AGGTGGTGGCCGCATATCAGGCGGAGCACCCCA 54730 29 96.6 32 ............................T GGCGTCGAGCCAGGCGGGGCGGGGTGACTTTT 54791 29 93.1 33 .......T....................G TGGCTCTGCACGCTGCCCCTTCCCCAACTTGAG 54853 29 86.2 0 ..............T....A.......TG | ========== ====== ====== ====== ============================= ================================== ================== 37 29 97.8 33 GTGTTCCCCGCGAAAGCGGGGATGATCCC # Left flank : AACGCGACTCAGCGCGGAGGACGAGCTTACGCGGCCTGCTGTGGTGGAGCTGTGGGACTATCAACAAGGCACTGTCGGAGCAGGCATAAACTACTCTCCTTTGGATGCTGACCCACCATGGTGACTTTAGTACTCACGGCGTGTCCAGCAGGTCTTCGTGGCCACCTCAACCGCTGGTTGCAAGAGATAGCTCCAGGTGTATTCGTCGGCGAGCTGAATCCGCGTTTACGCGAACATGCCTGGGCTCTTACTGTTGAAGGCATCAAAGATGGTCGGGCCATTATGGTCTATTCCGATAAAAACCAGGACCAAGGCTTCGGCTATGTGGTGCATCGACATGAATGGGAACTGATGGACTTGGATGGACTCACCGTAATTCGAAGGCCGTCGAGAAAACGGCATGACCGCCGCCGGGGTGGATGGTCGTTTGCTGCACGGAAACGCCGGTCAAGTTAATTAAAATAACTTGCTTCGGGAAGTAAAGTGCCTGTACATTTAGT # Right flank : GTAGAAGGCGTAGTTACCTAGCTCGCTAAGGGGATTGTTTCCTGCGAAAATGAACATGAATCGACATTATATTAGTTGTATTGAGAATTGTTGTAGAAAATATCTTAACTAAACGTTATAGATAGTATTTAACATCTTTATGGGATAATGAATAAGCTCGCGCTATAGCTGAAATGATTCTTACCGATGCCTTTGAGTGGGACCGGTTCCAATCAGCATTTGAATAGCTGTGTTGGCTCCATAGCATGCCGGCGATGTATGGATGCGAGCTGCTGAAATACCTTGTACAGTAGTCCGCGGACGGATTATAAACTACGGTTTTTCCCCGCGTGAGTGAGGATGATCCATTGATGATTATGATCCATCCGGTGTTCCCCACGCGAGTGGGGATGATCCTCCTTCTGGATAGCCTCGACCGCTTTTAACCCCCGATGTTCCCCGCGCGAATGAGGTTTGAAAACAGGATTGCGCTGAAGCACAGGCCCGCCTTCGCTGGCCTC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAAAGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAGAGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3105-7036 **** Predicted by CRISPRDetect 2.4 *** >NZ_VXKI01000019.1 Corynebacterium spheniscorum strain CCUG 45512 contig_0000019, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 3105 29 96.6 33 ............................C AGAAGGTGGTGGAAGCTAGGGCACGTAGGGACG 3167 29 96.6 32 ............................C ATAGTAGCTTTATTTTCGCCACTGAAAATTTG 3228 29 96.6 34 ............................A GGGCGAGCCTAACTCGATGTGGAAACAGTACGGG 3291 29 100.0 33 ............................. CAACCGGTATTGTCACTATCACTGCACCTGCGG 3353 29 96.6 33 ............................T CCGGGGAATCAGGTTATCGACGTCTTGCCACGG 3415 29 96.6 33 ............................C ACCCATGGTTGGACACCGAACGTTACCCGCTGA 3477 29 100.0 33 ............................. GTCAAAATCACCGACGAAGCGGTGAAAACGAAT 3539 29 96.6 33 ............................C ATGCGGTCCACACATTCGTCGACAGCGGTCACA 3601 29 96.6 33 ............................T CGAAACAAAGCTAAAACTGTTGTATGAAGAGGG 3663 29 100.0 33 ............................. CGATCATGGTCCCGGAGTGGACTCGGGCGGTTG 3725 29 96.6 33 ............................C GAGGGCATTAGCGCGGGTTTGCAGGCGGCCGGA 3787 29 96.6 33 ............................A GCGTCGTGCATAGGACAGAGCATAGCGCGTTAT 3849 29 100.0 33 ............................. AGTTTGGTGAGTGGGTTAAGCGCAACTCTGAGT 3911 29 96.6 33 ............................C AGTCACCAGCTCACGGTGGCAGCGCACCTCCAG 3973 29 96.6 33 ............................C CCGAGGTTTGATACCTAACCCGAGGTTTGGTTT 4035 29 100.0 33 ............................. CAAGCTATCGAAAAGGTTGAAAAGCAAACAGGC 4097 29 100.0 33 ............................. GACACCCCACCAAAACGGCCCGCTATATTGCTT 4159 29 96.6 31 ............................A GGCCCTTTGGATACCCCCGGGCCGCGTTGCT 4219 29 93.1 33 .A..........................T GCGCACATCTCACGGGTGAGGTCAGCGCAGGTG 4281 29 96.6 33 ............................C AGTCGAAGCATCCGCCAACTTAGCCGCCGCCTC 4343 29 100.0 33 ............................. CTCAACAGCATTTTGTTATGCATTGCGATGGAG 4405 29 96.6 33 ............................C TAGGAAAGGCGCAAAATAAATGATCCCTTATGG 4467 29 100.0 33 ............................. TGTTCATTCCAGGACACACGGCCAGTCAGCCGC 4529 29 96.6 33 ............................C GTTTCGAGTGCCTGGGCGGGTGGCGGCGTTCGC 4591 29 96.6 33 ............................C GCTTTGGACGAGTTGGATATCTTGATATAGCTG 4653 29 96.6 33 ............................C GAGACCGATGTTTTTAGCGCCACGTTGGCGGAT 4715 29 96.6 33 ............................C GCTAATCCGGTGGCCAACGCTAGAACGATCGCT 4777 29 96.6 33 ............................C TACTCAAGGATCTAGGGGCCTAGCACCCATGGA 4839 29 100.0 33 ............................. ATGGCATCACCGAACTATTAAAGGGTATAGACG 4901 29 96.6 33 ............................C TCCGAGTACGTCTTGGGTGCGTAGCAGGGAGGT 4963 29 100.0 33 ............................. CGACTGCGACGCTTGAGGAATGTATTCGTAATG 5025 29 100.0 33 ............................. GCAAGGACCCGCAGAAGACGCTTGGCGATACTA 5087 29 100.0 33 ............................. CACAAGGAGTCACCAAGCAGGGTGCACCATGCC 5149 29 96.6 33 ............................C CTATGGCGGGTAATCCGTGATCAACCAGGTGAG 5211 29 100.0 33 ............................. CGGTCAGCCTCAAAACGCGCCAACGCCTCCAAA 5273 29 96.6 33 ............................C AAAATCAAGGACGTGGGTCGGTCTGTGGTCCCG 5335 29 100.0 33 ............................. AACTTAGGGCTATGCAGTCGGTTGGCGCTTCGG 5397 29 100.0 33 ............................. GTGCAGTTCCCCGGTCATTTCATCGAAGCCTGC 5459 29 96.6 33 ............................T TATTAAACCCACCTGGGACGCGCTTGGCCAGGG 5521 29 96.6 33 ............................C AACCCCAGGCGCGTATCCGCCCACGTACCGTCC 5583 29 96.6 33 ............................C GAATTTCATCTGCTTGCCACGGTTTTTCCATGA 5645 29 96.6 33 ............................C CCTTGCGGCGTGTAGTCTTTAGGGTCTGGTGTT 5707 29 100.0 33 ............................. AACACCGACTCATCAACCTTCACGGTCGGATCA 5769 29 100.0 33 ............................. ACGTGCTCTACACCATCCTCGAGGAACAGAGCG 5831 29 96.6 33 ............................C ACTGGCAGCGCAACCGAATGGACGTGCGACAAA 5893 29 100.0 33 ............................. TTCGGAGTGCTTCGACATGACGACTTCGTCCGC 5955 29 96.6 33 ..................A.......... CGAACCGGGGGCACCGCGCACCCCGGCAGCTGA 6017 29 100.0 33 ............................. GCCCGCCACGACGGAGTTATCGAAGTGATCGCC 6079 29 96.6 33 ............................T GCGCTGCCATAATCAAGCAAAACGCTAATAAGA 6141 29 96.6 33 ..............G.............. TACACGCTCGATGCGATTATGGGTGAGTTCATT 6203 29 100.0 33 ............................. TACTCATTGACAGGTACGGCGATAGGCACGGCC 6265 29 96.6 32 ............................C ACGATTGACACAGGTCAACGCGCCGTTTGGGT 6326 29 100.0 33 ............................. CGTCCGCAACTACCGGCTCTAGCCGCCCGGGGT 6388 29 96.6 33 ............................C CCATTTCGATGCCGAGCACCCAAATGCGTAACC 6450 29 100.0 33 ............................. AACGCCGACGATGGCCGCCACATCATCTGGGAC 6512 29 96.6 33 ............................T ACGGAATACGATTTAGCCACTTTTCAGGTAGAT 6574 29 100.0 33 ............................. GCCGCGAGTGCTACCGCGGGGTCCTGGGTTTTG 6636 29 100.0 33 ............................. CCGACATCACTGACCTGGAAACTATTGAGTATG 6698 29 96.6 33 ............................C GTCCGCCATCACCGCAGCGACAGCCTGGAAAAC 6760 29 93.1 33 ......T.....................C CACACCCCGATGCACCCATAGTGCAGGACTACC 6822 29 100.0 33 ............................. AGCAGGTACCCCTCCGAAGAATCGAGACATCCA 6884 29 96.6 33 ............................C GGACGATCCCGCCAGCCACCCTCCGCACACGGC 6946 29 100.0 33 ............................. CCCATCTGGGACGCGCTGGCCACGGCTGCGAAT 7008 29 72.4 0 ............AA..C....T.TT..TT | ========== ====== ====== ====== ============================= ================================== ================== 64 29 97.5 33 GTGTTCCCCGCGTGAGTGGGGATGATCCG # Left flank : ACCGAGCCGGGCGACTACAAGCTGAAGATCACCATCTTCCCGCCGTCGAACTACGATATCCACTCCGACTACATCACCGGCGTGCCGGCTGATGCTTGGTTCAAGCCTTTGACCCAGGAAATGGATTGGAAGATCGAGCAGGAGAACCTTGACGCAGTCAAGGAGAACACTGTCGACAATCCGATGGAGCCGGGCGACAACTGCAAGAAGTACCCCAAGAAGATGTACGAAAACAAGGAAGCTGCAAAGACCCTTGAAGAGGCTGAGAAGAACGAGCCCCTTAAGAAGTAATCACTTCTGACTGACTGGCCGGGACCCGCTATCCTTTCGAGGATTCGGGACCCGGTCTTTCGCTGTGTCAGGGGTGCTCGGCTGGTGTGTCGATGGCCTCTTGAGGGTCGGCTGGACAGTGAATCTAGGCCCGTTTCCGAGGGACCATCGGTGTGCACAAGTTAAAGCTATAATCGACCCGTGAGAACTAAATAGCGAGGTCAGTTAGT # Right flank : TTTATGTCACTCAGGTACTCTCGCAACCCCTGCATTCGAACTGGTTTAAACGTCAACGCCGACTGTATGGACTCGCCTCAAGAGCCCCAGTACCAGTCGGCACCCCTGCTCAACCGCGTGCGCTTAGCTTTATGAAGAACTCATTTATGGCCTGCGTTGAAGTGCAGCTGCTCTCAAATGCGAGCATTCTCGACTTCCTATTTCTGGCGGTGGTTTCCCCCTTATTGCCTATCTCCGCATTCCTGGTCTCATTTCTCAGTGGCCGGGAAAATAATCGCTTGACTATTTGGTGTTCAGTGTTCTTCTAGTTGCTGCTAAAGTGTTAGCTAGTTGCTAAAAACTATGGTCGAACATGCAGGTAGTGGCATGGGGAGAGGTGGTTGTGGTGTCGGTATTCATTGTGGTTGTTTTGTTGATGGCGCTGGCGGTGTATCTGGCTCGTCGTACCGATAAACCGATCGTGCGTTACTTCTTGCTATTCATTGCTTTGCCGCTGGCGG # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.55, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGTGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATGAACCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.60,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //