Array 1 235-24 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYPS01000060.1 Micromonospora sp. RP3T NODE_60_length_29974_cov_131.553, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 234 28 100.0 33 ............................ CGCGGACGAGGGAGAGTGCGTCTGGCAGGAGAT 173 28 100.0 33 ............................ GGTCTGGGACACCGCCGACACCGCGTCGCAGTA 112 28 100.0 33 ............................ GATCCAGGACATGATCAACGCCCACCCGAACGG 51 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 4 28 100.0 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : TTCCGAAAGCTCGTCGCCTTCCGCACCGCCCTCGCAGAGGGCGCGAGAGCCGGGGCGACATTGGCGCAAGAGGTGGGCGACAACCTCTTTGGCGGCAGCCTCGAACTCCCCGACATCGAGTAGACCGACATTCTAGAGAAGTGGCTCTATGGCTATCGCTCGTAGTTTCGCGTCCGTCTCGCTCGTTCCAGGGCGCGACACGCTGACGCGACGGTTCCATGATGTCAGCGCTTGCTGAGCTTCGGCGAAATCGACACCGCCTTTACATCGCACCCTCAATCAACCAGCACCGCCTACCAGGGCATCAACATCAACCTTGCCTCTGCCCTCGCGGTCGACGCTAGCCGTCGTCACGTCCACTGCTCGTTCTCCTTCGGTCTTACCAACTATGCTGTGGCGAGAGTTGGGCTCCTGCGTCCGCTGGCACCGAGAGGACGATCGTGCGGTCGCTAGTGAATGAAATCCGTAGAGTCGATCTTTAGCGCTGCAGGTCAAGTAGT # Right flank : CCCGACGGCGCCGGCGACCGGCGA # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [5.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 2 19461-16463 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYPS01000060.1 Micromonospora sp. RP3T NODE_60_length_29974_cov_131.553, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================================================== ================== 19460 28 100.0 33 ............................ CGAGATGGCCGAACGGATGCGCGCAGAACAGGA 19399 28 100.0 33 ............................ CGCGGTCGCCATGTGGGACGAGAAGCGCTCGTG 19338 28 100.0 33 ............................ GTAGGGCCACAAGTACCGGACCGAAACAGAGTC 19277 28 100.0 33 ............................ CGCCACCACCGGCAACACCAGCAGCGGGCAGCA 19216 28 100.0 33 ............................ GGGCGTGAACGTGCGCGGGCCGTCCCGCTTCAC 19155 28 100.0 33 ............................ CTACCTGATCGAGCCGCCGGCCCGCAAGGTGCT 19094 28 100.0 33 ............................ TGTTGCTACCCTCTGGGAATGTCGCCCCCCTCC 19033 28 100.0 33 ............................ GCTAACGGTGAGTTCGGTCATGGGACTATTGCT 18972 28 100.0 33 ............................ CGACGTGTGCCTTCCACGGGCCGTCGGGCTTTT 18911 28 100.0 34 ............................ CCACGGTGCACCGTTCTGCCCCGCCGAGGGGTCC 18849 28 100.0 33 ............................ GCGGAGCATGACGATGTGGCCGATGCGGTCGTG 18788 28 100.0 33 ............................ CGTTTCCCAGGTTGAGGGGGCGGAAAGAAGGGT 18727 28 100.0 34 ............................ CACGGTTGCGACCGTGCTCAGGAACAACGCCCAT 18665 28 100.0 33 ............................ GCCAACGCGTCTCTTCAGTTGAAGGTCGACCTT 18604 28 100.0 33 ............................ GCTGGTGTTCGGCGTGGAGCCGAGACCGTCACG 18543 28 100.0 33 ............................ GGTGCCGCCGGTCGGCGTGCCGGTGATGGTGAC 18482 28 100.0 33 ............................ GCTCACGAAGGTGTATTCGTGGATTGATGACAC 18421 28 100.0 33 ............................ CGTTCTCCCAGTCACCGAGAGTGCCGAACTGAT 18360 28 100.0 33 ............................ CGACACCGCGGCGTGCTGCATCTCCTCGGTGAA 18299 28 100.0 33 ............................ CTCGTGGGTGAACGTCCAGCGGGGCTGGCCGCT 18238 28 100.0 33 ............................ TTCGCCGGCCCACGTCGGGCCGCCGGCACGCCG 18177 28 100.0 33 ............................ GTTGCAGCCGCTGCTCGGCCGCCGCCTGGTGTG 18116 28 100.0 33 ............................ CGAAGCGCCCCCGCCGGCCGGAGCCGAGCGGGG 18055 28 100.0 33 ............................ GGCGCCGACGTCGACGCTCACGCTCGCATCGCT 17994 28 100.0 33 ............................ CCTCTCCTGTCACCCCGGACGCGCCGCCCGCCA 17933 27 96.4 33 ......................-..... GGGCTACCGGGTCTGGGTGAACAACACCGGCCG 17873 28 100.0 33 ............................ CTACGACGTCGTGGCCGCGCCGTGGATCACCGC 17812 28 100.0 33 ............................ CGGGTTTCACCATCTTCCTGTTCTCCGGGAATG 17751 28 100.0 33 ............................ GAGGTCAAACATGGACACCATCGTCGCGAAGCT 17690 28 100.0 33 ............................ GCTTGCTCACGGAAGGTCTCATCGTAGGCAGCA 17629 28 100.0 33 ............................ GGACGCCCGGACGGCGGCGACCCTGCACGAGGA 17568 28 100.0 33 ............................ CCGGCCGTCGGCGAGCGCGTACCAGTAGGCGCC 17507 28 100.0 33 ............................ CATGGCCACGACGACATGGCCCGCCGGTAGTTA 17446 28 100.0 33 ............................ TGTTCGACGCGCGGGCAGCGCGGGAAGGCGAAG 17385 28 100.0 33 ............................ GGTTTCGGCGGCGGCCACCGTGGGTGCGAACAA 17324 28 100.0 33 ............................ CAACGATCCCCTGACGATGACGCTTGGAACATC 17263 28 100.0 33 ............................ GACGCTCATCGCGTCCACGCAGGATCTCCGCAC 17202 28 100.0 33 ............................ GTAGAAGGGGAACATGGACAGCTCGCGTCCCAT 17141 28 100.0 33 ............................ GCGGGGCAGGTCTTGTTCCTCCTGCCAGAGGGT 17080 28 100.0 34 ............................ AGAGCGGGGCCGGCAACCGCGGCGGGAAGCCGGC 17018 26 85.7 33 .............G......--....T. GCTGCTGGGCAAGCCGACCCGGGAGGCGTCGAC 16959 28 96.4 33 .....................A...... GGAACTGGGTGAGGCTCTGTCCACGGTCGGGTC 16898 28 100.0 33 ............................ GTCGAGCGGTCGCGGATCCTCGGCGTACATCGC 16837 28 100.0 33 ............................ CTCCGCGCCCGCGTCGTCCGGATCTCCCCAGAT 16776 28 100.0 33 ............................ CTGGCCCGGCGCCGTCCTGTGGGGACTCCCGCG 16715 28 100.0 33 ............................ CAGCCAGCAGAGCAGCCGGCGGGCGGAGGTTCG 16654 28 96.4 72 .....T...................... CTCCCAGTCTTCAGGCGGATCCGACAGCGCGGGGTAATCCGGTACCTATAACGAAGTCATCATCGGCCGTTC 16554 26 85.7 36 ....A...............C.--.... ACCCGGGTAGATCGAGGAGACCAGCGAGCTGTTGCC C [16545] 16491 28 75.0 0 ...TAT........A..AA.A....... | C [16478] ========== ====== ====== ====== ============================ ======================================================================== ================== 49 28 98.7 34 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : GGACGTCTGGAGAGCCCTGTACGACGCCGCCCGAGCAGAGTCCGGAGAGCTGGGTGACTTCGCGCCGTACTGGGTGTTCTCCGGACCAGCGAAGATCGAACGACACGTCCTGCCCTATCCGCTGAGCCGCGACCAGTCGAGATTCGCGAGACTCAAGGCCGAGCTGGTGAGATATCGGCTCGCGTTCGGTCAGCCCCGGCAGGAAGACCTGCTGCTCCTTCTACAGCGGCAGGCGGATGGCGAGAGCGACGTACCTGACGTCCTGGATCTACGGCCTCGACGGGATCCCGATCCACTGGAGGAACTGGGCGCATGCCCGAGCCATCGGTGAGTGGATGGTGGCCAGAGGGGCTCGCCGAAGGCGCACTGACTAACTACGCTTTCATTGAGATCGCCAGGGTGTCGGCTAGATGCCAGACCGAGAGCAGAGGGAAACGATCTTGCAGACCATAGTGAATGAAAACCGCGAAGTCGATCTCTAGCGCCCCAGGTCAAGTAGT # Right flank : CAGCCCGCGTTCAGATCAAGGTTCTGATGACTCCGCTTCGTTGGTCGCCGTAGCTGCACGACCGCGCCGGCCGAACCGGCGGCGCTTGGCCGCCTTGCTCCAACCTCCCACGGCCGCTGGATTGATCACCGGTACCGCGGGTCGGCGCATGAGCGTCACGCCCTCCACGTCCACCGGCGTCCAGTGATGATCGTGTGCGACGAACGACAGTCGCTGCTCGCCTCGCACTTGGAACACCATCAGGGCACGTCCGGCACCCGCCATCTCGGTTACCCGATTCCACAACCTGTTCCGTACGCGCGCGCTGACGTGTCCGACGTACACGCCGGCCGAGAGCTCGAAGAGCCACTGCGTCAGATGACCACGGAGTCCGGGTGGACATGCAGTGAGGATGATGACCGTCATCAGAAGTCGACCTCACCTGTGTTGGCGTAGTTGCGCCCGGCAGCCAACTCGATCCCGCTCCCGTCCCAGAGCCGGAGATCCTCTGCCTCATCTTC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 3 29932-26672 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYPS01000060.1 Micromonospora sp. RP3T NODE_60_length_29974_cov_131.553, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 29931 28 100.0 33 ............................ CGTCCGGTTCGCGAAGTCGTCCATGATCTCGGT 29870 28 100.0 33 ............................ CCTCGCCATGGGCCGCAAACCGCTGTCATTTCG 29809 28 100.0 33 ............................ CAGCTCTTCCAAGGGCTCTCGCACCTTCCTGGG 29748 28 100.0 33 ............................ GGAGCTGACCCGGGAGTTGCGCAAGGCGATCCT 29687 28 100.0 33 ............................ CGCGTTCACCGTCTTGTTGAGGCTGTCCCACTT 29626 28 100.0 33 ............................ GACGTACCCCACCGTCTCCGTCGACGGCTGACC 29565 28 100.0 33 ............................ GCTGGGACAGCGAGTGAGAGGCGATATCCATGG 29504 28 100.0 33 ............................ GGTCCGGGCCCGTCGGGATGCCCCGCACGACGA 29443 28 100.0 33 ............................ GAGGGCCGGGTCGCCGAGCACCGAGAACACGTT 29382 28 100.0 33 ............................ CGACATCGCGCCGGCATGGGTCGTGGTCGGGTG 29321 28 100.0 33 ............................ GTCGGTCATGATCTCGCCCAGTGACCGCACACC 29260 28 100.0 33 ............................ GGGTGGAGGCGGCGTGACTCCGGAAGAACTCGC 29199 28 100.0 33 ............................ GGCATGGGAGGGTCGCGCCCGCGCGCTCGGGAT 29138 28 100.0 33 ............................ TCCCCTGCTCCGCGAGACGGCGATGGACCGGGC 29077 28 100.0 33 ............................ TCCTGCTGGCGACGGTTGGCGAGGGCCGGACGA 29016 28 100.0 33 ............................ GGTGGCAGGGCCGCTTGCGCAACTTCACAAAGA 28955 28 100.0 33 ............................ CTACACGACGGGTGCGGCGTTCACGCTGACCTA 28894 28 100.0 33 ............................ GTCCCGCAGGAAACGATCCTTGGTGGCCTGGTC 28833 28 100.0 33 ............................ CCGCTGCTCGATGTCGTCCGGGCCAGCCCTGCC 28772 28 100.0 33 ............................ CGCCCCTGCGTGGCGTCCGCAGGACAACGACAT 28711 28 100.0 33 ............................ GAGCCAGCTCGATCCCTTCACGGTGGACGCGCC 28650 28 100.0 33 ............................ CAGTACACCTCAACCTCCGGTGCAAGATGCGGG 28589 28 96.4 33 ...T........................ GATCCCGGGTCGCCCGCACGGGCGTCCTCCGAC 28528 28 100.0 33 ............................ GTACGCGCACGCCAGCACGTCCCCGCGGTTACG 28467 28 100.0 33 ............................ GGGCAGCCGAGCATCTCGGCCGGGCTCACCGTG 28406 28 100.0 33 ............................ CAGGCCGTACGCCGCCCAGTCGCAGCCGCGGTT 28345 28 100.0 33 ............................ GGTTCCACCGGCGCCTTCCGGCTGCTGGACGAT 28284 28 100.0 33 ............................ GACAAGCCGCATGGCCTTTTCCAGCGCCCACCC 28223 28 100.0 33 ............................ GGAAATCGCCCCGACCGGCGGTATCCGTTTTAC 28162 28 100.0 33 ............................ CATCACCAACCTGACCGCCAAGGACCTGGAAGA 28101 28 100.0 34 ............................ GATCCGGGGCGTGATCGTCCGGCCGCCGCACGAC 28039 28 100.0 33 ............................ CATCGGCCGGTCGATCCTGTTCACCGCCAAGGG 27978 27 96.4 33 .................-.......... CACCATCGACCTCGCCGAAGCCGCCCTTCGCCG 27918 28 100.0 33 ............................ GCTGGTCTGGGAGGTCTCGACCAACCCGATCGA 27857 28 96.4 33 ...T........................ GGCGCACCGCTGGTCGACCCGGCGACGCTGTGC 27796 28 100.0 33 ............................ CGGCGGCGAGCAGCTGTTCTATGACGATCCGAC 27735 28 100.0 33 ............................ CTGGCCGTCGCCGGACCAGTCGATGCTCACCTC 27674 28 96.4 33 ...........................T CGATCTGCTGCTGCACCTGTTCACCATGTTGAA 27613 28 100.0 33 ............................ CTCGCCGCCGAGGTGGCCCGGTGAGGGGCGAGC 27552 28 100.0 33 ............................ GGGCGACAAGGTGCGGGTGGTGTCGTTCGGCGC 27491 28 100.0 33 ............................ CCGGAACTTGGCGGCCAGCGCGGTACGCGCGGC 27430 28 100.0 33 ............................ GCCCTCAACCCTCTCGCCCGCCGTGGCCCTGGT 27369 28 96.4 33 ..............T............. CATCACCGGGCTCGGCGACCTGCACGCGGTGCG 27308 28 96.4 33 ..........T................. CTTCAGCCCCGCCGACGACAGGTGGCTCGTGTT 27247 28 96.4 33 ..............T............. CTTGTATCCGCCGAACTTGTTGATGACCTTCAG 27186 28 96.4 33 ......................C..... CTGGAAGTGGTTCCTCATCGGGGCCGGCGTGGG 27125 28 96.4 31 .......................C.... CTGGCGGGTGGCCGACGGTCTCTCACCCGCC GC [27106] 27064 28 85.7 33 ............A.G...CA........ GTTCCTGACCAGCGCGGACGTGTTGCCGTGCGT 27003 28 96.4 33 ..............G............. CTTCGGCGGGGCAAGGGCGAGGACCAGGGCGGC 26942 28 100.0 33 ............................ GCAGCTTGGCAACACCGACTTCCGCTAGATGAT 26881 27 89.3 33 ........G.A..........-...... ATGATGATGCCCGACCGGATCTCCGGCCGGCTG 26821 27 89.3 33 ...G..................-...G. TCGGGCGGCGCGGCCGGCCGGGACCCGCAAGCG 26761 28 89.3 34 .............T..T....C...... CGGCCGGCGACCTATATGGCCCGGCTCGCGCAAG 26699 28 78.6 0 .C.T..........G.T..A.A...... | ========== ====== ====== ====== ============================ ================================== ================== 54 28 98.1 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : GGGGTGATCCGGGTGAGCAGATCACCCTGTCCGCCACCACCG # Right flank : AAGGAAGTGGCCAAACGGGCCTCGCTCCGTCGCGGGGCAATCCCTGTCATCAAGGCATGCCAATCCTGTCGATCCGGCAAAGCGCAGGAGAAACGGCGCTGCTTAGCGGCTGAACGTCTGGCAACGAACGTCGATCGGATCATGGCCGCCAAGCCCGACGGTACCTACAGTGGTGCGGTGCTAACCGTCGGCGTTGACCTCGCAGCCGCAGACAAACGCACGGCAATGGCCGCAGTTGAATGGCTGCCGGGCCGAGCAGTAGTACGTGACCTGCTCCTCGGCGTCAGCGACGCTCAAATCGTCGAGGCGAGCCGCCACTCGGACAAGACCGGGTTGGACTGTCCACTCGGGTGGCCGGCGCCCTTCGTCGCACTCGTCACTGCCCACCAGGCCGGCCATATCGCCGCCAGCGACGGCGAGGGTGGGCTGTGGCGGCGCCACTTGGCCTATCGCCAAACTGACGAGGTAGTGCGCGAGCAGACTGGGATCATCCCGCTCAG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [28-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [36.7-23.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 1 87158-83406 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYPS01000035.1 Micromonospora sp. RP3T NODE_35_length_87286_cov_120.422, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =============================================== ================== 87157 28 100.0 33 ............................ CACCTCGGTGATGGCCGGGCCCAGCACGGGGTC 87096 28 100.0 33 ............................ CGGTGACAAGGGTCCGATTGCCTTTCACGCTTT 87035 28 100.0 33 ............................ CTGCCCGGTGCCCAGCTCCAGGTGGGAGTCGAC 86974 28 100.0 33 ............................ GGCTTCGAGCGGTGGAAGGCGAGGCGGGGACTG 86913 28 100.0 33 ............................ CTGCTCGGGCCGGGCGGCGTCGAGGAGCTGGTG 86852 28 100.0 33 ............................ CGAGCCGGTCCCGGACGTGACCGCCGACATGGC 86791 28 100.0 33 ............................ GAACTGGCCGATGTCGAGGGCGCTCGCGTAGGT 86730 28 100.0 33 ............................ GTGGCCCTGCCACCTTGACTAGCCCTGAGCGAG 86669 28 100.0 33 ............................ CGCCATCAACACCTGGTCGGGGACCGGGGACGC 86608 28 100.0 33 ............................ CGGGGTCGGCGTGCCGACGTCGACGACGGCGAC 86547 28 100.0 33 ............................ GGAGTTCGTGCAGCCTGTCGGAGCCGTGGACTA 86486 28 100.0 33 ............................ GGCGCTGTTGCGCTGCTCCTGCGACAGCCCGCC 86425 28 100.0 34 ............................ CCGCGTCGCGCACGAACGGCAGTTCGGCCGGCGT 86363 28 100.0 33 ............................ CAGCGCCGGCGCCTCGACCATCCAAACGATGAC 86302 28 100.0 33 ............................ CGCCACCGGCGTACCCAACCGGGTCCGCAACAC 86241 28 100.0 33 ............................ CACCGGCAGCAACGACACGCCGGGACACCTGGC 86180 28 100.0 33 ............................ GCTGGTCGAGGACGCCGCGAACGGCCCCGCCGT 86119 28 100.0 33 ............................ CGGCAGGAGCACGGCGGCACCTCCGGGGAGATC C [86114] 86057 28 100.0 33 ............................ CGACCCGCAGCGGCAGGCCGCCCGCGCGAGCAA 85996 28 100.0 33 ............................ GAAGCTGGCGTGGGTGTGGAACAGGTGGGAGGC 85935 28 100.0 33 ............................ GGACTCCACCGCCGCGCTCGCGGCCACTGCGAG 85874 28 100.0 33 ............................ CTTGAAGTCGTTGCGGCGGGGCCGGTGGCCGGC 85813 28 100.0 33 ............................ CCGGTTACGGATGCGGTCCATCACGGACCGGCC 85752 28 100.0 33 ............................ CTGGTCAACCTCGACGGCCGCGCCACCAGCGTC 85691 28 100.0 33 ............................ CCAGTTGACGATCCGGGCCGGCGTCTGCACCGC 85630 28 100.0 33 ............................ CTACAACGGCTTGACCGCCGTGACCTTCCGAGG 85569 28 100.0 33 ............................ GTCGCCGGTACGCAGCGCGTTGACCGCGCTTTT 85508 28 100.0 33 ............................ CTGGCTTCCCGACTTCACCCGCGCGGGCGCGGT 85447 28 100.0 33 ............................ CCGGCACACCGCGCCGGCCGGCGTCCACACGCC 85386 28 100.0 33 ............................ CCACCGCCGGCCCCGAGACGGCCCGGGCAGTGG 85325 28 100.0 33 ............................ CGCGATCGTGCCGGACGAGTCGATGACGTTCAC 85264 28 100.0 33 ............................ ACCCGTCCGCCGTCAGGTCCAGCTCAACGCCCA 85203 27 96.4 33 .....-...................... CCCGAACGGGCACACGCCGGCCGAGATTCTGGG 85143 28 100.0 33 ............................ GAGGACATCCAGACCTGGTTGGACTCCGAGCAG 85082 28 100.0 33 ............................ CCGATGCGGGTAGCACAGGTGACACAACAGACA 85021 28 100.0 33 ............................ CCGCTTGTAGAACAGGCCGGTGAACTGGGCTTT 84960 28 96.4 33 ...T........................ GGTCGGCACGCCGGCCGGCGCGGTGGGGGTGTC 84899 28 100.0 33 ............................ GTCGATCAGGGAGTTCACGTCGGTGCCCAGCTC 84838 28 100.0 33 ............................ TCGCGGTCGCCCGCGCATGGTCGGCGTTCGCGA 84777 28 96.4 33 ..............T............. GCCGCGCACGTTCCCGAACAGCCCTGACCGCAC 84716 28 96.4 33 .........................G.. GGAGGAGGTCGAGGTCCTCGCCCGCAAGATTCG 84655 28 96.4 34 ...T........................ AGTGCGGGCGGTGGTGGTTGCTGATGAAGGTCAG 84593 27 96.4 33 .....................-...... GCCGACGCCGGTCGAGCCCGCGAAGCCCGAGCC 84533 28 96.4 33 ...................A........ CGACCGGCACCGGTGTGGGCCGTGCTCAGAGGT 84472 28 96.4 33 ..T......................... CGGGCTGCGCGGCGTCCCTAGCCGCTTCACCTC 84411 28 100.0 33 ............................ CTGCCCCGGGGTGCCGTAGCCGATCTTCGCTGC 84350 28 96.4 33 ........................G... CAGGTCGTTAACCTTGTCCTGGTCCGCGCTGGT 84289 28 96.4 33 ..............T............. CCACCCCGTCTTGATGGACTGGCCGGTCGCCGA 84228 28 96.4 32 ..............T............. GTAGCCATCGGGTCGGGGGCGGTCCAGGCGCC 84168 28 92.9 33 ..A...........T............. CTACTACCAGGAGATCGGCAAGCGCATCGTCGA 84107 28 96.4 23 ..............T............. CGCCGGGCCGTGGCTCGCCGACG Deletion [84057] 84056 28 82.1 33 .G.GG.........T......A...... CTGCGTACGCAGCTCGGCGGGGTCACCAAAGAG 83995 28 92.9 33 ..............T.......C..... CTCGTCGCCCGGGCCGATCCGCTCGACGTCCCG 83934 28 89.3 33 ..AT..........T............. GGCGCTGCCCGGGTACGCGGCGGCGCTGGACAC 83873 28 100.0 33 ............................ CAGCGGTGTGCCGATCACCGCCGTGCAGGCCGA 83812 28 96.4 33 ..............T............. CTCCGTATTCGCTATTGCGGCAGCCTTTTGCCT 83751 28 92.9 33 ..............T......A...... CGAGCTGGCGTAGGTGCCGGTGGCGATGGACTG 83690 28 92.9 34 .........A....T............. GATGTGCAGGCGGTACGGCAGGGCGGCCATCAGC 83628 28 96.4 33 ..............T............. CCGGACTTGAGCCCGCCAGTAACGACCTTCCAT 83567 27 85.7 47 ..............T.G.....-.T... CGGCCGCAGTGCCGTGTTCGCCGCACCGCGGACTGTCGGCACGGGAC 83493 28 96.4 33 ..............T............. CGGTGGCGACTACTCCAACACCAGGCCCGACGA 83432 27 85.7 0 ..A.....G.....T.-........... | ========== ====== ====== ====== ============================ =============================================== ================== 62 28 97.7 33 CTGCTCCCCGCGCACGCGGGGGTGATCC # Left flank : CCGACTCAAAGACCGCGACCTCGGCCGCGTCCCCGCGGCCACCAAGACCAACGACTAAAGATCAACCAAACCGAGGTGGTCCAGTTTCAGCCGGACCACGGTGGTCCCGTTTGAGGCGGCGTTGACAC # Right flank : CAGATCGGTGGCAATCGCAGCGGCGCTACGCTACGCGGCGTGGATATACAGGTGGATGCCCGTATCGCGGGTGTGATCTTGGTCGATCCGGTAGGTCGCTTGTTGTTGCAACTGCGTGACGGCAACACTCGGGTGGACCCGCACCGTTGGTGCCTGCCCGGTGGCAACGTCGATCCGGGTGAGGATCCGCTGACCGCTGCTCACCGAGAGCTGCTGGAGGAGACCGGTCTCAAGGTCGAAGAGCTTCGTCTGTTCTGGCAGGGCATTGCCCCTTCGGCGAAGTTCCCCGGCGCGGTCGGCGAGTTTTCGATCTTCTACGCGCCGACCGACGCCACGGAGGGGGATGTGGTGTGCGGGGAGGGTGCCGCAATGCGTTTCGTTGACGGCGTTGAGGTGCGCTCGCTCGAATTCGGGCGGGCGTATGGGGAGATCGTGCCGCGTTTTCTTGATGCCCCGCAGTACCGGGAGTTGGTCAGCGCCTCTTGATCCACGTCAGCCGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [33-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], //