Array 1 437-2452 **** Predicted by CRISPRDetect 2.4 *** >NZ_OADV01000020.1 Neisseria meningitidis strain Neisseria meningitidis isolate R940, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 437 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 503 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 569 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 635 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 701 36 97.2 30 ......................T............. CGATTTACCACCCATAAAACCACCTCAAAA 767 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 833 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 899 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 965 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 1031 36 100.0 30 .................................... ATAAAAAATAAAAAAAACCAAAAATAATAG 1097 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1163 36 100.0 30 .................................... AGACTTAGCACGTTTAACTTGCTTAACAAG 1229 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGGTCGAAAAATAC 1295 36 100.0 30 .................................... CAAAGCTATAAACACGTTTATCTGTTGTTA 1361 36 100.0 30 .................................... ATGGGGTATGCAATTACATCGCTTGGGTTT 1427 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 1493 36 100.0 30 .................................... GCTCAGTTGGAACAATGAATACATCTTGAA 1559 36 100.0 30 .................................... ATAGGTTCTATTAATACGTCTTTCGTCTTC 1625 36 100.0 30 .................................... TTTTCCAGCGCGATGAGATACCCGGCATAG 1691 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 1757 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 1823 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 1889 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGTCGGAAAAATCC 1955 36 100.0 30 .................................... CTGAAGCTGATGAACGAGCACGTTTTGTGG 2021 36 100.0 30 .................................... CGTAGGGATGTGTGTTAAATCTACCGTTTT 2087 36 100.0 30 .................................... CGCCCCCATGCTGATGGTGCGCCTCGCCGA 2153 36 100.0 30 .................................... ACATCTTCGCCGACATAACCTGCTTCGGTC 2219 36 100.0 30 .................................... CGCCGAAGCCGCCCCAGTAGGCTTTGGGTG 2285 36 100.0 30 .................................... ACCATACCTGAAGTGGAAACGGTTACGCGG 2351 36 100.0 30 .................................... TTTCGGCGGCGACGCCCCACGGTTTTTGGT 2417 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.8 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : AAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTGG # Right flank : TTTCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //