Array 1 21822-21674 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUS01000012.1 Escherichia coli strain MOD1-EC5009 MOD1-EC5009_12_length_173542_cov_19.428, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 21821 28 100.0 32 ............................ GGAACAATCTTGCAAAGGCTGTGAAAGTTGGC 21761 28 100.0 32 ............................ TTCACTGGTAACATACTCCACCCGCCCACCAT 21701 28 82.1 0 ....................A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 94.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTAATCTCGAAAGAGGTTGCGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAAAGGTAAGGATAAAAAAGGGTGACAGCAGGAAAATGAGATGGTTTTGCTTTATTAACAACGGACTAAACGTGTAGTATTTGA # Right flank : CGAAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGACCGCCTGAAATAAATCTGACTTAATCCAGGGGTGTTATATAATTTCATTATAAACAATGTATTACACTTTTTGTTGTCCGATATTATCTAATGTATTCTTAGTGAAGCGAGAGACTAATGGCATACTGGATGGCATACCAGAGTGACGGGAATTAGCGTATGGCAGTATTGACGGATACGAAAGCAAGACATATCAAACCTGATGACAAACCATTGCCCCATGGGGGAATTACCGGACTGACCCTTCATCCTTCTTCAGTAAAGGGGCGGGGGAAATGGGTTTTTCGTTATGTAAGTCCGGTGACACAAAAAAGACGTAATGCTGGATTGGGAACTTACCCAGAGGTCAGTATTGCTGAAGCTGCACGTACTGCCCGGATAATGCGAGAGCAACTTGCTGCAGGTGATGATCCTCTGGAGATTAAAAAGGCTGAATCTGAG # Questionable array : NO Score: 5.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 152874-151624 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUS01000005.1 Escherichia coli strain MOD1-EC5009 MOD1-EC5009_5_length_293138_cov_20.2905, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 152873 29 100.0 32 ............................. CAAACGTCAGGCGGAAGTGTTCCGGTCATATA 152812 29 100.0 32 ............................. GACCAGTCGGGCCAGACATCGGGGACGCAGAA 152751 29 100.0 32 ............................. CCGACCGCCATCGCGCATTTCGTCGAACGTCG 152690 29 100.0 32 ............................. CATCGCACTAATCTATTTATTGACGTTGCGCG 152629 29 100.0 32 ............................. ACCGGTTTTAATTGATGCCCACGCTTCGTTTA 152568 29 100.0 32 ............................. AAAACACATTTTCAATAGATGGCATTCAGCTA 152507 29 100.0 33 ............................. CGATTATGAGTTTGCCGGAGAATAGTTACCTGC 152445 29 100.0 32 ............................. AGGTTTTTCTGGATAAAATCCCGGGAAAGGTG 152384 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 152323 29 100.0 32 ............................. CAACATTTTCCAATATCACCCAGCAATCAATT 152262 29 100.0 32 ............................. TCATGAAGACTTCGATTATTTCTTGATACCTG 152201 29 100.0 32 ............................. ATTTCATTAATTTTGCAGAGAAGTGTCTCGAA 152140 29 100.0 32 ............................. CAATAACACCGGCATTTGTCCACGACAATATT 152079 29 96.6 32 ............................A GCGTAAGAAAACAATTTTTTCAGAAAACTAAC 152018 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 151957 29 100.0 32 ............................. TTTATAGCGCCAAAATTGACGAAAGACATGTT 151896 29 100.0 32 ............................. GGAAATTAGGCAAATGTGAACACGGCGGCCCC 151835 29 100.0 32 ............................. ACGACGAGACGCCCTGGTGTGCCGCGTTCGTC 151774 29 100.0 33 ............................. CCATAACCACCCCCATCATGAATATTTTCCGGC 151712 29 100.0 32 ............................. GGCGCACTGGATGCGATGATGGATATCACTTA 151651 28 72.4 0 ..A........C..T....T-.G..CT.. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 98.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCTGTTTCACTGGGAGATGCAGGCCATCGGAGTAGCTGAAATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTGTATGTAGGTGATGTATCCGCAAGAATCCGTGAAATGATCTGGGAACAAATATCTGGACTGGCGGAAGAAGGCAATGTGGTGATGGCATGGGCTACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACTCCGGTAGATTTGGATGGTTTAAGGTTGGTCTCTTTTTTACCTGTTTAAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : CAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGTTTCTTCACCAGCGGTAGTATTATCCGCATAACATCACGGCAACGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGAGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAATTAAGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTTTCGGTGTCACTCATCCGCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 179794-178420 **** Predicted by CRISPRDetect 2.4 *** >NZ_NLUS01000005.1 Escherichia coli strain MOD1-EC5009 MOD1-EC5009_5_length_293138_cov_20.2905, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 179793 29 100.0 32 ............................. CTCAGCGGCAAAAAATACGATCTCGCCGGTGT 179732 29 100.0 32 ............................. GCAAACCGGCATCAGATATAAGCTGTTCTCTT 179671 29 100.0 32 ............................. GACTGACACAATCTCAACTTGCTGAATTAACA 179610 29 100.0 32 ............................. AATGGCGCTGCCGATCGACAAATGGGACCTGG 179549 29 96.6 32 ............................T ATCGGGTTCCCTTTTAATGTGATTCCGAATTC 179488 29 100.0 32 ............................. GCAGACGTTACGGAACGGCGCGCGAGTATAGC 179427 29 100.0 32 ............................. AACAGGCCTGGGTCGACGAATTGCAAGAGGTC 179366 29 100.0 32 ............................. CAACTTGGCGACACAGACGTAACGGCGGTGTC 179305 29 100.0 32 ............................. GCTTTAACTCCATTTATCAAAGCGCAATTAGA 179244 29 100.0 32 ............................. ATAGCTGATAGCTCTCTCAATAATTAACGGAT 179183 29 100.0 32 ............................. CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT 179122 29 100.0 33 ............................. GGCTGGCATCAGATTTCTAAGGAATACGACAAC 179060 29 100.0 32 ............................. ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG 178999 29 100.0 33 ............................. CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC 178937 29 100.0 32 ............................. TTGAAATGTGGCCACACCGTGTTAATGTATGG 178876 29 96.6 32 ............................A TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC 178815 29 100.0 32 ............................. AATATTTACTTGGATGCGTCGGACATTGAATC 178754 29 100.0 32 ............................. GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA 178693 29 100.0 32 ............................. GCCGCGTACATCAACGCAGCAGCAAGCGCATA 178632 29 100.0 32 ............................. TTAGTTCAGGATGCATAATGAAATACCCGACC 178571 29 100.0 32 ............................. TCAACGAAAACGCAGAGCGAGGAACGGATATT 178510 29 100.0 33 ............................. CAGGCAACATTTACCGCCGGTCAAAAACAGGAC 178448 29 93.1 0 .......................G....A | ========== ====== ====== ====== ============================= ================================= ================== 23 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCATCCATCTTGCCCATCCTGAACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCTCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATTTGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //