Array 1 1477406-1484584 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006933.1 Methanobacterium formicicum strain BRM9 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1477406 30 100.0 35 .............................. CGGGTTCCAACTATGATAGTGTACTGTGTGGGCCA 1477471 30 100.0 36 .............................. AGAGTATAATCGGGAATGGTTGAAGAAATATATTGA 1477537 30 100.0 36 .............................. GTAATCAAGGTAGTCTTGGTTGCAGTTTTCACTTCC 1477603 30 100.0 37 .............................. TCGAATTTGTATTAAACGACAGCACACTAACAGATGA 1477670 30 100.0 36 .............................. CGTAGTTCTGCTTCGTCGTCCTCACGACTGATACAC 1477736 30 100.0 37 .............................. TAGTCGAACTGGTATTGTTCGTTTTCTTTCTGTTTCA 1477803 30 100.0 37 .............................. GTTAAAAGACGATGTGAAAACCAAGGCGTTGGCTGCT 1477870 30 100.0 36 .............................. ACACTGATTTCTTCATTAGTATCTTCAAGGGGTAGT 1477936 30 100.0 36 .............................. CAAAGCACTAAGCCACAGTAAAACCCGAACCAGAGC 1478002 30 100.0 36 .............................. TTCATATCAATACATTTCCATGGTAGATGATAAGTA 1478068 30 100.0 37 .............................. TGGCCTTGAATTCATCATACCTTTCACGGTAGTAACG 1478135 30 100.0 37 .............................. GGGTAAAAACTGCCCAATATCCCAGGATGAGTAAGCA 1478202 30 100.0 37 .............................. ATATGTAAACAAGCAAGAATGGACTCAAAAAATAGGC 1478269 30 100.0 36 .............................. TGAAGAAACTATAATCTGTTTCAGCATCTTCAATCT 1478335 30 100.0 36 .............................. ACTTTTAATATAGTATTATAATAAGGGCAAAAATAC 1478401 30 100.0 36 .............................. ATTGTCCCATGCCACTGGTGGCCATTAGTATGATTA 1478467 30 100.0 36 .............................. TTAAACACTTCTATAAAACATTTGAAGTAGACACGC 1478533 30 100.0 37 .............................. CATATAGGATACTTGCATCATCTATGTGTTTTTCCAA 1478600 30 100.0 36 .............................. TTTGTATTCTGCAATTAAATCGGCTGCTTCATCTAT 1478666 30 100.0 36 .............................. GACCCTGAAAGTCATGGGGATGAATTCTTAACAGTT 1478732 30 100.0 36 .............................. TGAACTATACATAAATGGTTACTTTGAGAGTGTGGG 1478798 30 100.0 35 .............................. CTAACGGAGGAGTGTTATTTTTGAGGCATAGTCGT 1478863 30 100.0 35 .............................. GAGTAAAGAATTGATTGTAAAAGTGCACAAAGTGA 1478928 30 100.0 36 .............................. GCTTTTTTAAAAAACCGCTACAAAAAAGACATTGAA 1478994 30 100.0 37 .............................. TGGATTAAAAACAAAGACAACTTCTTTAATGATGATT 1479061 30 100.0 36 .............................. TCCTTAATCACTCTCCGTTTCTCCTGTTTTTAAAGT 1479127 30 100.0 36 .............................. ACAGTTATATGAAATATCCAGTGAAATATTTTATAA 1479193 30 100.0 36 .............................. AGCACTAAGCAGCCAGTATATTAACAATGAACCCTT 1479259 30 100.0 37 .............................. ACAATCCACGGGTTATCCGGGTGGACCCTCACATAGG 1479326 30 100.0 38 .............................. CATAAATCCTCCGGAGAGGGTTTTGTATTCGTTGTCGT 1479394 30 100.0 36 .............................. TCAATAACCCACCACAACTGTTCCAGGATACACACA 1479460 30 100.0 37 .............................. TGAATTTCATCTTTTATCATTCCTCCCTGAGTGTGAG 1479527 30 100.0 36 .............................. CAATGGGAACTATTAAAGCATTACTTGACTTGTTAA 1479593 30 100.0 36 .............................. AGTGGCTCCAACCATTCACAATCCATTATTTGATAG 1479659 30 100.0 36 .............................. TTCAGGTAACGCTGACAACATGAAGGGCAGTTCTGA 1479725 30 100.0 38 .............................. AAATATGCTTACAAAGGAAACTGCCCGGGGCTTTTTGA 1479793 30 100.0 36 .............................. TCAATAAACTGGACTTCCAGGATCTCCAGCAAAGAT 1479859 30 100.0 36 .............................. GAAGGTCCGACAACCCACACCCGATGAATACAGGAA 1479925 30 100.0 36 .............................. CCGCTTTGCTCCTCAACTTTGCGTGGGGTGTGAAAA 1479991 30 100.0 36 .............................. CTAAAAAGACAACCACCAAGAAAACCACTACTAAAA 1480057 30 100.0 36 .............................. TGATGGGAAAAGCAATATCCAGAAAATGATGAATGA 1480123 30 100.0 35 .............................. ATGAGTGTGGGGAACCTGTATATTACTTGTTGTTC 1480188 30 100.0 36 .............................. TAGAAACACCCACAGTACCCATACCTAAGGGTTGGG 1480254 30 100.0 36 .............................. GAAACCGAAGAGGAAGTGGTGATATAAGATGAGTGA 1480320 30 100.0 36 .............................. TGATTATGCTACGATGACACGACCCGAAGACTGCAC 1480386 30 100.0 38 .............................. ATCTTTTGCATGAGGGCCTATTTCAATTTGGTTTTGAT 1480454 30 100.0 37 .............................. AAATCATCCCCTCCGCATGGTTCACTTTCAGCGTTGT 1480521 30 100.0 36 .............................. ATTGAAAGGTTTCACCTCTCTAGATATCTAAAATAG 1480587 30 100.0 36 .............................. GAGATTGCTGAATATGTAAGAAAGTGTAAGGAAAAT 1480653 30 100.0 36 .............................. AAACAGCCTCCGGATCATCTCAGACGCTTATGAGGG 1480719 30 100.0 36 .............................. GTTCATAAAAAATATGTTAAAACTATGCCTGAATAC 1480785 30 100.0 35 .............................. TCCTTTATAATGTAACGTTTAAGATCCTCAGAAGG 1480850 30 100.0 35 .............................. TGCGGATCTTCCACGTACACAACAAAGTCAAAGAA 1480915 30 100.0 36 .............................. CTTCAAATCCAAGGGTGTAATCATCTGCTCTGTATT 1480981 30 100.0 36 .............................. AGATATAATAATCGCTACTAATAATTATTGGTCTGC 1481047 30 100.0 37 .............................. TTGATTATACCATTGTGGGATGTTCCATCCGTAGTAG 1481114 30 100.0 36 .............................. TTCTTTGTATTCGTCTATTATGAGGGTTGCCAGGCG 1481180 30 100.0 36 .............................. ATAAAGATATTTATTTAGAAGACAGATTTTTAGGCA 1481246 30 100.0 36 .............................. CGGCAATCATCAGATAAAAGGCAAGGTAGGGTAGTG 1481312 30 100.0 36 .............................. AGTGAAAGTTGGGACAGGATCAACACTAGCTCCGCC 1481378 30 100.0 36 .............................. TTTTCAACACGTGCTTATCAGTTTCGTCTTAGACTC 1481444 30 100.0 35 .............................. AACACAAAAAATAAAGAAAAATACATATTTTATGA 1481509 30 100.0 36 .............................. GTGGATAAGAGACAAAATACATGAGGAAGTTAAACT 1481575 30 100.0 36 .............................. ATACCATTACTTGCGGAAAAACCATTAATTTGTAAA 1481641 30 100.0 36 .............................. ACAATCCTCCTCATCTTCTTTACCAATCATATTGTC 1481707 30 100.0 36 .............................. CTAGATTAGACAAAAAAAGAAACCTTTACTTTATAC 1481773 30 100.0 36 .............................. GTCTGAGTTAGGAATTTCTCAATAGGTGTGCTTTCA 1481839 30 100.0 37 .............................. CGGATAATCATGTAAGGGTTCCCCTGTGGCCACCACC 1481906 30 100.0 36 .............................. TCGAAGAAGACCAACTCCGAGAACAACTAAAACACA 1481972 30 100.0 36 .............................. AGCTTGGGGGTAAGAAGCTTGGTAATGGTAATTTTA 1482038 30 100.0 37 .............................. AAAGCCGACGAAGCCATAGGACTTGTTCGGGATGCGG 1482105 30 100.0 38 .............................. CCTGTACACTGTTTAAGGTGGTTCCATTGTATTTGAGG 1482173 30 100.0 36 .............................. GATTCCTAGAGAATGGTTTGAGCGGTACATGAAGTT 1482239 30 100.0 36 .............................. TCCTCAGGGGCATGCAGGTTCCAGCTGCATGAATGT 1482305 30 100.0 36 .............................. TTCTGAAGTCTAAAAGGCAGATCATACGTTTTCATA 1482371 30 100.0 36 .............................. GAAGATCTTATCTTCAGACCAAGAGGACTATTTTTT 1482437 30 100.0 35 .............................. TAATGTGGAACACCATTAAATGGCGTGCCAGAAGA 1482502 30 100.0 37 .............................. GCGATAAATGCGACTAGTGATTGCAACGAAAATAAAA 1482569 30 100.0 36 .............................. TTAAATTCACAGAGGAATTTTTAAAAGAAATAGCAG 1482635 30 100.0 36 .............................. ACTGATGTGTAAAAAATGAATACGTACAATCCCAGC 1482701 30 100.0 36 .............................. TTACAAACCTGACCACACCGCCTGTAGGCTTGAAAT 1482767 30 100.0 37 .............................. TCTCCAAGGGCTAAAGCAAATGGTTCCATAGTTTTAT 1482834 30 100.0 36 .............................. CAAAGGGAATATTTTTCAGTTTCTTCGTCTGTTAGA 1482900 30 100.0 36 .............................. TATACTTTTTTTATGCCTTACCAAGCCATCTATTAA 1482966 30 100.0 36 .............................. CTTAAATCCACTGGGACTTTGTTATGGAGATTCATG 1483032 30 100.0 36 .............................. GGAGAAGTTGGTGAAAACAAAACTCCAAGAAAGGCC 1483098 30 100.0 36 .............................. TAGAAAAGCAATTGATGACTTCCCTGATGGAGTTCC 1483164 30 100.0 36 .............................. GCTAAATCTTTTTTACTTAAACGCTGAGCATCATAA 1483230 30 100.0 36 .............................. GATTGAACTACTTCTGCTAAGTATATGATAAATATC 1483296 30 100.0 38 .............................. AAAATATTCTGAAAGAATTGCAGAGTGATGGTTTTGTT 1483364 30 100.0 36 .............................. ATTAGATGTTACACTAACCCCAAAGGCCAGTTTAAC 1483430 30 100.0 36 .............................. CATCATGTTTCATGAAAAAAGGCATGGCAACACTAA 1483496 30 100.0 36 .............................. AGAACTATTCATAGGGGAAATAGCACTTTCAGACAT 1483562 30 100.0 36 .............................. CATTGGAAGAAATGGGGGAATAAGAATGGAGAATGA 1483628 30 100.0 35 .............................. AAATCCCCCATAACTGCATAAATAACTGCATTACC 1483693 30 100.0 36 .............................. GCCTATTTGGATGTGAATGGTGAACAACTCTTTTTC 1483759 30 100.0 36 .............................. TAATCCTCCTCATGGCAACGAGTGGCATGGCACAAT 1483825 30 100.0 36 .............................. TCAACTGAAATGAATGTTAGTGATGCAAGTGTTGAT 1483891 30 100.0 36 .............................. CCAGTGCCAGGTGCATTTAACTCTTCGAGACTGTCA 1483957 30 100.0 36 .............................. TCAACTGAAATGAATGTTAGTGATGCAAGTGTTGAT 1484023 30 100.0 36 .............................. TTTCATATTGGTATTGCTTTGTAATAATTTAATGGT 1484089 30 100.0 36 .............................. GATAATCATACACCTGCACAGTGTCCAAACTCATAC 1484155 30 100.0 37 .............................. AACCAGTGGCTATGAATTACTCCCGTATAGCAACCAC 1484222 30 100.0 36 .............................. TAATCTGTTGATGTGAATTTCATGTATCCTACTGAA 1484288 30 100.0 39 .............................. CAAGGATAAATGTTCCAATAAGTTCGGCTACTGATCTTT 1484357 30 100.0 36 .............................. TGATTTTTACATGTATTATTATCCCCCTTCTACGGC 1484423 30 100.0 36 .............................. TTACATGAAGGCCCTTCCACGGAGATAGATGTTGTA 1484489 30 100.0 36 .............................. TTCACAGTTACCTGGCCGTGCATGGTCTATCTTCTT 1484555 30 93.3 0 ........................A....T | ========== ====== ====== ====== ============================== ======================================= ================== 109 30 99.9 36 ACTAAAATCAGACCATTTTGGGATTGAAAC # Left flank : GTGAACTGGTAGATATAAAAAATAATCTGAAAGAAATTATGAATAAAAATGAGGATTCAATAATAATTTACGCACTCCGGACAGAAAAAGCATTGAAAAGGGATGTGATGGGTGTTGAAAAAGCCCCTATTGATGGAATAATATAACCAGATATCTTTTTTCGCCCCTAATATTTCACATCTCTTTTTAAAGAACTGGATAACTCCGGATTAAAAGGCGTTTTTGACTGATTATCAAGTGAGGCTTTGAAATAATTCCATTTTATTTTATTCGCTGCTCAACAGTTATCCATTTTCCTGTTGTTTTGATGCATCATACCTCGCCAAAAACTGTTGAATGTTAATTATGATGGCAGATACTGAATAATTTCATGAAAAAACTCAAATCTTAACCTCGTTGTCCCATATAAAAGAATTGGCTAACCGGGGAACGACAAATTTATGTATATTATTGGAGAAATAATAGTAAATATTAGGCAAAATAGGGCAAATTTCGGCCCT # Right flank : TCATCTTTTTGATTGTTTTTGGACTAGCAAGTAACCAAAAAAGTAGTACTACTATATAGTTTTACTCAATTTGTGGTGATATCAATAATTATTATTAAACTTGAAAATGATTTTCCAGAGTTAAAAGAAAAAATATGATTAATCTAAATCTATTTGGAGAACGACGTAGGGATACTCATTTATTATCTTATTTTAAACCTTCTTCTTGATTCTTTTACGTTCTAATAATCAATACAACCTAAGAACAAAAGTCTTCAAACTTATCCTTAACTTTTGTTCCATAATCAAAGCCGATATCATACGTATATTCCATTTTGCAGATTACATAAAAAACTTCTTTTTTTCCAAATGTTCTGGAAACTATCTCAAAGAATTCTAAATCTTCCCCACATTGATTTTGGTCATTTTGATACCACCAAAAAGGAACTTTCACTTGGTTTTCAACGTTCAAATTCATTTCATTATTATTATAGATTACTAAAGGAATAACATCAATTTTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTAAAATCAGACCATTTTGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 1941348-1953262 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006933.1 Methanobacterium formicicum strain BRM9 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ====================================================================================================== ================== 1941348 31 96.8 36 ..............................T GATTTTGAACGTGAAAAAGAAATAATCAAAAATGAA 1941415 31 96.8 35 ..............................T TCCGGGCTGGTTACATATAGGGTGCATAGCTCTTT 1941481 31 96.8 37 ..............................T AATTTTCTTTTTCATTAAATATATAATACACCCCCCA 1941549 31 96.8 36 ..............................A AGTCAGACTTGGCAGAAAATCAACCCGCTTAACTGG 1941616 31 100.0 36 ............................... CAGGGTGCAGTAGTAGAACGGAATGTATTTGATAGT 1941683 31 100.0 37 ............................... TTCAGCAAGACCTTTAAGGAGCCCTGTCATGATTTCC 1941751 31 100.0 36 ............................... TCTTGAGGGCTGATTTTAACTAAATCGTCTTTAATT 1941818 31 100.0 36 ............................... GCGAAAAACTCCTAGGCACATTCACCACTTTCACAG 1941885 31 100.0 36 ............................... GTCTGGATATATAGGCCCCATTTTGCTTAGTCCACT 1941952 31 100.0 34 ............................... TTTAATGGGTTATAATCAACGTTTATGGTATTTA 1942017 31 100.0 37 ............................... CGCTAAGGAGAGTAGATACAAATGAAGAGTAATGTAT 1942085 31 100.0 37 ............................... TAAACTTTTTTTCTCTCTTTTTCTTTGTTTAATTTAT 1942153 31 100.0 35 ............................... TGTTCCGGGGTATTGACTCCAATTGGAGGTAGTCA 1942219 31 100.0 36 ............................... AATAAATCATATATTAAAGAGTGTTGGTCTGGATTT 1942286 31 100.0 35 ............................... TTAATTATATTAAAATATTAAAATATTTTTATAGA 1942352 31 96.8 34 A.............................. ATGTATGGGAAACACCACAAAGCAAAATCAAAAG 1942417 31 96.8 36 A.............................. ACGTTTAAGGGAAAATGGACGGATGAGGAAACACGA 1942484 31 100.0 36 ............................... ACACTCCCGGTGATATATCCTTTTAGACTGGTGGTC 1942551 31 100.0 36 ............................... CAGTTAAAATCACTGATGATGATGTCTGGCAGAAAA 1942618 31 100.0 36 ............................... TCGATAAAGCGGAAATTTATCTTTACGGTAAAAAAT 1942685 31 100.0 36 ............................... TGTTTCGGGTTCAAGGACTCGGAACTGGTCCAGGCT 1942752 31 100.0 36 ............................... GAACATCCATGTTCTCATTGATCAAGTCTTCGACGT 1942819 31 100.0 36 ............................... TGACTTATTGGTGATTCTGCCTTCATAAATCCTTCA 1942886 31 100.0 35 ............................... AAAAGGGGGAAAATAAAAAATGGCATCTGAAATAG 1942952 31 100.0 37 ............................... GAAGAAAAAACAACCTCACACCATGAATGTGGTTAAA 1943020 31 100.0 36 ............................... TTACCTGGCCTTCATGCTCCCACCGGGTGAGCCAAG 1943087 31 100.0 34 ............................... TACACTATGATAATTATCTACATATTGGTTTCTA 1943152 31 100.0 35 ............................... GTTGTATAGTGTGGTTTTGGTGTTGGTATTCATAC 1943218 31 96.8 36 C.............................. CACCGTGGGCATTTAATTGAGTTTTCTTTTAGATAT 1943285 31 100.0 37 ............................... TTTAATTCAGATTGTAAGGATGCTGCTTTTGATTTAG 1943353 31 100.0 36 ............................... TTTTCAAAAATCCAAGTGTAAACGTCATACTGTAAT 1943420 31 100.0 35 ............................... TACCAAATCACCTCCTTATGGGGTTGCAGATACTA 1943486 31 100.0 36 ............................... CATGGCTACATGTACCTCTATAATGGAAACCTGGGC 1943553 31 100.0 36 ............................... GAGGTAACTGTAATTCTCCAGATTTGAGTTTAACAG 1943620 31 100.0 35 ............................... CCGACAAAGCCGGTACCGGTTGGATTGGAGTGAAA 1943686 31 100.0 36 ............................... CCTACACTGAAGTCGTTGGTAAACCTGCTATGCTCA 1943753 31 100.0 35 ............................... TTTAACTAGTTGGTGGTATTTTATGACTGAGATGA 1943819 31 100.0 35 ............................... CAGCTTTTCCCTTTAGGTGTCTTGATGACTTCCAT 1943885 31 100.0 37 ............................... TAAAAGATGGGGATTACTACAACACGCTACGGTTTAC 1943953 31 100.0 36 ............................... GCTTCAGTATGTTTATGAAGTTTTAGACTTCATTAA 1944020 31 100.0 35 ............................... TGGTGCTTTGACGTGTGCTAGTTCGTGGAGTTCTG 1944086 31 100.0 36 ............................... TTGAAGAATTGAATAAATTCGAAAAAATGGATGGAC 1944153 31 100.0 35 ............................... TCGAGAAATTATCTGTTGATATCAAGGACAGTCAC 1944219 31 100.0 35 ............................... ATCAATAAGAAGAATATCCTGGAAACCAGTGCCGA 1944285 31 100.0 36 ............................... GAACATATGTCATGGCAACAATACGCAGTATTCCTC 1944352 31 100.0 34 ............................... ATTAGACATTACTTTCCCCGGGAGAGAGGGGCCC 1944417 31 96.8 35 T.............................. AAACTGTGCATTGTCATCTTTAGATTTAAGGTTTA 1944483 31 100.0 36 ............................... GCAACAGTGCATTAACATGTTCACGGGCCCTTTTAG 1944550 31 100.0 36 ............................... CCATACCCTCCAAAGATGCTCACATCCCTAAAAGAA 1944617 31 100.0 35 ............................... CTTTGATTTTGCTTTCAGATATATTACCATACCTC 1944683 31 100.0 36 ............................... CAAGATTTGCACCTCTAAGGTTTGCACCCTCAAGAT 1944750 31 100.0 36 ............................... ATAATTTTTTCTGTTCTAATGATTTGTTGTATCTAT 1944817 31 100.0 36 ............................... ATGAGATTCTTTTCTAAACCCATTTTTTTAAAATAA 1944884 31 100.0 35 ............................... TTACAAATTGCAGACCGCTTTGCAGACCGCTATGG 1944950 31 100.0 36 ............................... CTGAATGGTGATGCGGCCACATCTTTAAGGGTTTTA 1945017 31 100.0 36 ............................... ATATTAGCAGGCGATAAAATGAATAAATGGATTAAC 1945084 31 100.0 35 ............................... TATATTAGGGTCTATGAGGTAGTCAGGTCTATCCC 1945150 31 100.0 36 ............................... GAAGTCTTTAATTCTCCGGATTATGTCATGGAAGGT 1945217 31 100.0 36 ............................... TCACTGAAGCAGCTATGTTCCGTAGGGCGCAGACTG 1945284 31 100.0 36 ............................... GCAGATATAAATGATACATCTTTTGGGTTTATATTT 1945351 31 100.0 34 ............................... GTGCTTCTTGCCAATCATTCAAATGGTCATGTAA 1945416 31 100.0 36 ............................... TTGAAGAAAAGATTAAAGTATCTGGTGAACAGGCAG 1945483 31 100.0 35 ............................... TAGGTGTATACGAATCCCTGGGTATTCTCTTTGAA 1945549 31 100.0 37 ............................... CCTCTTTTGAATTTAACGCATCTAATACTTTCTTAGC 1945617 31 100.0 36 ............................... TAGTAAATTTCAGCTACGAAATGAGCTTGACGGACT 1945684 31 100.0 37 ............................... ATACGAAAGGCGAATAAACGCCCAGTCAGGTTCTATT 1945752 31 100.0 34 ............................... AATTCATTACAATCTAGATCATATCCTTTTTCCT 1945817 31 100.0 36 ............................... AGATTTATTATTAAAAGAATATGATAATTCATATTT 1945884 31 100.0 36 ............................... TACAATATCATGGGGCGGACCCGGCGAACATATAGA 1945951 31 100.0 35 ............................... GTGTATATTTAGTATAATCGTATTCTACAGTAATA 1946017 31 96.8 36 T.............................. ACTTATACATACGTACTGTAGATGGTGAGATATTTC 1946084 31 100.0 36 ............................... TAATTTCATCAACTCTCTCATGTAAAGTCATTATAC 1946151 31 100.0 35 ............................... ACGGAGAATATATAAAACAACTAAAAGACCCCCAG 1946217 31 100.0 36 ............................... CATAAAAGACAATAAACCTTCTAAGGTTTCCAATTC 1946284 31 100.0 36 ............................... ATTGTTGCTATTGCTTCCGGTGTGGTTTCATAGTCT 1946351 31 100.0 36 ............................... TCAGCAACAGTACCTGCTTCAACAGCATCGATACGA 1946418 31 100.0 36 ............................... CCAGCCACGCTCTGAAGAATTTCATCCAGGGTAATA 1946485 31 100.0 36 ............................... TGGAGCTGAAGGGGTTTGTCTTGGTCGGACAGAGAT 1946552 31 100.0 36 ............................... TACCATCCAGGGAGGAATGGAAGGACCCTAACCTTA 1946619 31 100.0 36 ............................... AGTAATCTAATAAAGGATTCATGCTTTTAGAAGCTG 1946686 31 100.0 35 ............................... ACCTCTAGACAATTTATGTGATGGCAGTGAGGACA 1946752 31 100.0 36 ............................... GGAAATGATAGAATCTGTGATTAGTCAGCTAGTTTT 1946819 31 100.0 36 ............................... CAGAATTGGTTAGGGGTGGGTGGCTGTCGAGGTAGA 1946886 31 100.0 36 ............................... CCTTTTTAGTCTCAGTGTTTTATATCTTTTTCTTAT 1946953 31 100.0 35 ............................... GGGGTTGTCATTCTTTTGTGGCTTTTTTGCTTTGT 1947019 31 96.8 35 C.............................. ATTAATCAGATGTGAAACTGGTAAATTTATGGTCT 1947085 31 96.8 36 T.............................. TCTTAAAAGTAATTTCAATGGGGAAACTATAAAGTT 1947152 31 100.0 37 ............................... GGAATTGTAAAGTATCACGGTCTAACTTGTAACCGTC 1947220 31 100.0 36 ............................... GACGATGAATGTGTTGACGTGAAATGTGACTGTGGA 1947287 31 100.0 36 ............................... GGTACAGTTGAACATTGAAGTTACCATGTACCGGGC 1947354 31 100.0 36 ............................... AACTTAAGGGGGGGATATGATGGAAAATGAACAAGC 1947421 31 100.0 36 ............................... GAAGTAATGCAACCAAAAGAAATACTTAGAATCACA 1947488 31 100.0 35 ............................... TGGTGTGTCCGAAGGCCACACTGTTCTGGCAGTAG 1947554 31 100.0 35 ............................... GAAAATCTCCGAGGACACATACGTCCGGAAGAGCA 1947620 31 100.0 36 ............................... GTTTAGGACTACTGGTGAGTTTCGTATTTCTTTGAC 1947687 31 100.0 35 ............................... GCAGAATGAACAGTAAAAGAGACTTGTTTAAACGG 1947753 31 100.0 36 ............................... GTGTCTTCAGAGTCGTAGAGGTACGCCTCCCTTCGG 1947820 31 100.0 36 ............................... TTTGATGTTGCTTCTACAACATCACTTACATTGTTA 1947887 31 100.0 35 ............................... GGACTAACTACAGGTTTAATTTTAGTTGCAGCGGG 1947953 31 100.0 36 ............................... TAACACAACATGCGAACTGCTATGCACTCGAACCAG 1948020 31 100.0 37 ............................... ACTTCTCCCAGGTCATGGGTGTTTAATGTGGGACTAT 1948088 31 100.0 35 ............................... TGATAAAAATTATCAGATAAGGAGGCCCTAAACAA 1948154 31 96.8 36 ..............................T TAATTTTGGCTTGAAATGCTTTGTTCGGTTAGAGTA 1948221 31 96.8 36 ..............................T ATTGGTAGGTGTCTTTATATTGGGCATTAATGCAGT 1948288 31 96.8 36 ..............................T GTCATGATCAGCTCTACAATGCTATGAGAAAATTAG 1948355 31 96.8 36 ..............................T CTAGTGGATCCATCGACAGTTTTTAGTTTCGTGAGA 1948422 31 96.8 36 ..............................T TATTCAAGAACTCATTAGGATCACTGGCCTTCTCAG 1948489 31 96.8 36 ..............................T TGAGATCCAACATGATGGATTAATCACTAAGGATGG 1948556 31 96.8 36 ..............................T TAAAAAAGGCATGGCAACACTCAAACAGGATATAGA 1948623 31 96.8 36 ..............................T TTGCCTTCACAGTTATGATTAGTGCATATTAGTTCA 1948690 31 96.8 36 ..............................T GAGAAGAATTCTAAAGAGGTATTGAAAGGTATTCTT 1948757 31 96.8 36 ..............................T TGAGTTGTTTCTTTAATTTGCGTTTTTCTTTGAATA 1948824 31 96.8 37 ..............................T TCATGTAAGTGAAACTTGTGAATTTGGACCCCTTAAT 1948892 31 96.8 36 ..............................T TTATGTTCACAGTTAAGATTGGTGCAAATTAGTTCA 1948959 31 96.8 36 ..............................T TAGGTTTTGACCTTAAAACAGATAACGAGTTGATTA 1949026 31 100.0 36 ............................... TACTGGTTCTACCTACTGTGGTGAAGAATGCAGAGA 1949093 31 100.0 34 ............................... GATGTTGAAAACATAATCCATGAAGCTGTTCCAG 1949158 31 100.0 36 ............................... CAACAATGTTTATAATTTTATTTGTAGTGACCATAG 1949225 31 100.0 36 ............................... GTGAATGCACCCTTAACATTTTAGCGGGTAAACGGT 1949292 31 100.0 36 ............................... TTTAAAGGGATCGTGCGGGGTGATTCTTCTATTTTC 1949359 31 100.0 36 ............................... TTGGATTTGAAGTGGAAGTAATCGCCGGTTCCAATT 1949426 31 96.8 38 T.............................. AAAAGGGTGAATTTGGGAAGATTACCTCCTTTAAGGAA 1949495 31 100.0 35 ............................... AAATTCAAATTCTCAAAATTAGAAATCTTAAAATC 1949561 31 100.0 36 ............................... ACTATTTTTTACCCTTTTATTCTTTTTTTTTATTAT 1949628 31 100.0 36 ............................... CGGTATTGGATGACCTTTTCAAGGATGTTCCAATAG 1949695 31 100.0 36 ............................... GCAGAATTAAAGGAGATTGAAAGGGAGGTGTTCATG 1949762 31 100.0 35 ............................... ATATTTTTAATTGGGTATGTTCCCCACTTTTTTTT 1949828 31 100.0 36 ............................... TTCTACATTAATCCGATATTTTGAGGACAACGATAT 1949895 31 100.0 37 ............................... GAAGCAATGCTCATGAGAGTAGACAGCAGCTTCAACG 1949963 31 100.0 37 ............................... AGTGCTGGTTCTGATATTAGTATGCAAGATGTTTTTT 1950031 31 100.0 36 ............................... ACAAAATAAAAAAAAACTATAATAGTCCCACATTAA 1950098 31 96.8 36 A.............................. GAAATGGCATATGATGGTTACATCTGGTGGTAGAAC 1950165 31 100.0 36 ............................... AACTTACCCGTTTCATCTAGGCCCTTCATGACTCCT 1950232 31 100.0 36 ............................... GTTCCGAGTCAAAAACAGTTTTAGACATCTTTATCA 1950299 31 100.0 36 ............................... ATTGTTAGTTTAAAAAATTAAAAAAGGTTGATTTTT 1950366 31 100.0 36 ............................... CAAATTTACAGGAACGCTTCTACGTACGCAAGAAAA 1950433 31 100.0 36 ............................... TAAAATCAAACAAAATACCTGCAACCAGTTTAACAG 1950500 31 100.0 41 ............................... ATCAATCAGATTAAAGTAATTATTCATAGATTTGATTGCGG 1950572 31 100.0 36 ............................... GAAGATAAGCGAAGCTAAGGGTATCTTGAAATCTGT 1950639 31 100.0 36 ............................... ATAGGAAAGAAAAACCATGTTTTCGTGGAGGGCTGG 1950706 31 100.0 36 ............................... TAATCTTTGAAATTTCAATAGGCATCCCCTCTTGAT 1950773 31 100.0 102 ............................... AAAAGGAATGTTTCCAGTGCAAAGGCCCCATTAGTAGGCTAAAATCTGTTAAGGGTCATTAAAATGCCTGTGAAAAACTCATGTGCAAAGGCCCCATTAGTA 1950906 31 100.0 36 ............................... GGTGTTAGTTAGGTACAAATAGAAAGGTTCATCTGG 1950973 31 100.0 36 ............................... TTCATTTCTTAATTCAGGATATAAAACTCCGTCCAA 1951040 31 100.0 36 ............................... GGGCAAAGATGACATTATAAAGGAGGAGGGTTCTGT 1951107 31 100.0 35 ............................... TTGAAACAGATGATAACCCCCAAACCATAATGGAT 1951173 31 100.0 34 ............................... CCCATTGGGGCCACTCTTTGGTTTCGTGGGTTAA 1951238 31 96.8 35 T.............................. AATGTGGGCATGAAGAGGTGGCACGGAAATGACTG 1951304 31 96.8 37 A.............................. AAAGGGGGGCCTAATGAGTTAATAATTCAAGAGCTTA 1951372 31 96.8 36 A.............................. GAACCAGACGAACCCGACAATGTACAGGAAGGTCAG 1951439 31 96.8 37 T.............................. AAAAGAGACGCTTATTTTGACAGCCCAGAGGTTCAAC 1951507 31 96.8 35 A.............................. AGGATAACCTTCTTTGTTTTAAATACATGGCCAGT 1951573 31 100.0 36 ............................... AATATGCCCAGGTCCCGGAAACTAAGGAGGCTTTAA 1951640 31 96.8 36 A.............................. TTTTATTTGTATTGGTTTAAATCTATTGAATTTGAT 1951707 31 96.8 36 A.............................. GTAAGACTATGATGGGTCATGTTATCTCTGGTGTGG 1951774 31 96.8 35 A.............................. TGTATCTGTTGAATTATATCGAGTATACTGATTAT 1951840 31 96.8 35 A.............................. TCTAAATAATATGGATCTGTTTCTGCCAGGGCATA 1951906 31 100.0 34 ............................... ACCTTCTTAGAATGTCTGCTGATAAGTTAAGGGG 1951971 31 96.8 35 A.............................. TTCAGGTAATGCCATAATATTTACCTCCTAAAAAA 1952037 31 100.0 36 ............................... GGTGATATGGATAATCCAGAATGGCCCTTCAACTAA 1952104 31 100.0 35 ............................... GTCATGTAAGTGTTCATCTGCAAATTTCAATAACT 1952170 31 96.8 35 C.............................. GAGTTCGGGATGTATATCGCCTGTTACTTTTAATT 1952236 31 96.8 36 T.............................. TTATTTGACGACTTGAACTCTAAAGTAGATTATATT 1952303 31 96.8 36 C.............................. GCAAACTGGTTTGTTAAAGGCAGTGTTACACAACAG 1952370 31 100.0 35 ............................... TTTTTCGATTCTTTGTATTTCTGTTGCGAAGTTTC 1952436 31 100.0 35 ............................... TCAATGTATCATTGCTTATGAAGGGTTAGGAACAC 1952502 31 100.0 39 ............................... AGCCTTAAACAATTAGGAATTAACACCTCCGATTATGGG 1952572 31 96.8 34 A.............................. GTACAGCCCCTGTAAGTTCTTATACCTTTACGGG 1952637 31 96.8 35 C.............................. ACACTGGCCTGGTCAGCTGAAGAGGTGATAGTACC 1952703 31 96.8 35 A.............................. GGAGTAAATACACTATTAAATCTTATTACGTGCAA 1952769 31 96.8 35 A.............................. GCACTCATCTACTTGAGTTACACAGGCAAAAACAA 1952835 31 96.8 35 A.............................. GGTGATTGAGGTGTCTGCAAACATGAGGTACCTTT 1952901 31 96.8 37 C.............................. TCCAAGGAGTTGGATCAGCAGACTGTGAAATAATAAC 1952969 31 96.8 35 T.............................. TGAAATGAACATGACACAGGCCCTATTTAATATGG 1953035 31 100.0 34 ............................... TCACATCAGTATGTAACAGCTGATGATTTATACA 1953100 31 96.8 35 A.............................. CTGTTTTGCTGATTTTCTGAGCGGACTCTAAGGCC 1953166 31 96.8 35 T.............................. ACTATAGAAAAGTATATATAGTATGTGCAACAATG 1953232 31 83.9 0 T........................AA.T.A | ========== ====== ====== ====== =============================== ====================================================================================================== ================== 178 31 99.0 36 GGCTAAAATCAGACTATTTTAGGATTGAAAC # Left flank : GTGAACTGGAAATAATCAAGAAGGACCTGAAGAATATTATAAACAAGAATGAAGATTCAGTGATAATATTTACAGTAAGAAGCGAGAAAGCATTTAAAAGACAAGTATTGGGGATTGAAAAAGCACCTATAAGTGGAATATTATAAGTTTTACCTATTAAATCTTATTTTAATTATTCAAATACCTTTTTTTATTATAAAAATCACTCTTTCACAGTCGTTTTTTGAACAGATTTTTGGATTTTAATAAAATTATTTCAAGTTACTTTAATAGAATAGAGAAATAATGAGCATTCTATGAATCTCTGAACATCTACTCCTTGTTAAAACATCTCTATTTTAACTATTCGGAATAGATTTCCAGTATAAAACTATAAAAATTCATTAGAGAATGTCGTCTTACCATATAAAGGAAACCCCTAATTAAACACCGACAATTTAAGTACCATGAAAGAGTAAAGAATAGGATGAATTAGGCCAAATAGACGAAATTTCGTGCCT # Right flank : ATTACTCATTAATCCTATTTTCATTTGTGTCTTACTCTGTGCAGTTATCATCTGATTAACTCCCCCTTCCTTAACTTTATATCCCGCTATCTCAAAAATCATTAAGTATTAATTCAATGGATGGCAATGTAAACCATAAACCATACTATTAAAAAGTTTAGATAACATAGCAGATATATAAAATTCTAATATTTTACTGATATGAAAGGAAGTTTTTTTAAAATGAACATAGTCCCCTGTAGTTTAGAGTAGCATAGAATAACCAGCAAGATTCTATGAGCTATTTGATTAATTGATTAAATTGATAATTGATTAATTCGAATAAATTAATTGAAATTAATTAATTAATTAAATTTTAATCAAAATTACAAGTTACACATTTTATAACATTTTATCAGTTTAGGAGCGATATTGAATGTCCGAACCATCATCAACCGAACTTTATGAGGTTAAACGCACACTGAAAGAACTCTCCGATAAAAAAGGTCGGGGTACTGAGC # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGCTAAAATCAGACTATTTTAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.74%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-20] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA //