Array 1 574-1134 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXUN01000080.1 Staphylococcus warneri strain SNUC 5606 contig080, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 574 33 100.0 33 ................................. AACATACGTAATTGTTCGCCCATCATCTAATCG 640 33 100.0 32 ................................. AACGACGTCGAATTGTTCTGTGTACGCTGCGA 705 33 100.0 33 ................................. AACATGATTACTATTATACAATTGATTATCTAT 771 33 100.0 33 ................................. AACAACTTCGGTAGTAAATCATGCAAAAGGTTT 837 33 100.0 32 ................................. AACTATCTTGAGTTAACACAAAATAACTTGAT 902 33 93.9 33 AG............................... AACGAATTGGCTCCAAATTCTTTGTAAGAGCAT 968 33 100.0 33 ................................. AACTAACATCTCATTCTGTTCCAGGTACTTATA 1034 33 100.0 33 ................................. AAACGTTACTGAACGTGGAATCGACTTCGAGGA 1100 33 100.0 0 ................................. | A,A [1128,1132] ========== ====== ====== ====== ================================= ================================= ================== 9 33 99.3 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : ACAATACGGTGGCAAGTTGCTATTAATATATTTGTATCCTGAAGCAAATTTAAGTCCAAAAGAACAAATACGTTTGAAAGAGTTAATAATATCACTTGGAATTGATATTATAGTATTAACAGGGTCATTGCATTTTTTAGCTAAGGATTGGAAGTATAATAACTATATTAGATGTGATAATCAAAAAATATCATCTGAATTGGTAGATAATCTACTTTGGAATGCCCCATTAAATTTTGAAAGAAGTGAAATAGAGCAGAGTTTAAATCAATTTATATTAGCTTACCAAGATAAAATCGAAATAAAACCGATTATCTCTAATTATCAAATTGCTCAAATTATGTTATTTAGTTCAATTGATTTATATGTAGGAGTTTCATATATGCAACATTGCAATCATGAATTTATATTGAATATAGATGAGACGAAATTACCCTTAAGTATGGCTAAATATTTAGAACAGTTTGTTAAAGAAAATTAACTATAATTTTGCGCTAGAG # Right flank : ATTGGAGGATATTTATGAGTAGCATGAGGAAGCCGATTATAAAAAATATTAGTTATTCTAATGAAGAGCTAGTTAATTCATTAGGCGAGTGGCAACAGAGTGATGATTCCAAATTTTTACTCAGATATCCCACCGTCTATATTATAAATGATAAAAATAAGTCTGATCATTTTAATTTGTATGTTGGTGAAACAACGGATATCAAAAATAGAACAATTCAACATTTGAAAAATGATGTGAAGCTTAAAGACTATTGGAAATCATTTTACAGTTCTGATACGTCTTCGATGTATGTCATCGGACATCCGTTCTTTAATAAGTCTTTAACTTTAGATATAGAAAACAAGTTTATGCAATATTTGTCTAGTGTAGATGCTGTGACTTCAATATTTAATAGTAGAACAAATCAGCAAAATGAATATTATACTTCTGAAAAATTAGATGAAATATTCACAAATATTTGGCAACAATTACATAAAGAGAATAGTAAACTTTTTCCT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 5626-5131 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXUN01000009.1 Staphylococcus warneri strain SNUC 5606 contig009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 5625 33 100.0 33 ................................. AACTTCACATTGTTTTAAACGGACATCGTTATT 5559 33 100.0 33 ................................. AACTAAAGTAATGTGACTGCTCTTTTTTACTAA 5493 33 100.0 33 ................................. AACCAGATAATTATTCTAATGCGGCTGTTATTG 5427 33 100.0 33 ................................. AACTTAACTTCTAGTATATTCAATCCAGTATCT 5361 33 100.0 33 ................................. AACGCAGGTGGTTATGCATATGTGTTACGACCT 5295 33 100.0 33 ................................. AACTCACTCCTTTCTGCAATAATGGGTGGGGTT 5229 33 100.0 33 ................................. AACGGTGTTTTTAACAAGTCTAATCCCGTATGC 5163 32 78.8 0 ...........T........G.A-.....AA.T | T [5133] ========== ====== ====== ====== ================================= ================================= ================== 8 33 97.3 33 GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Left flank : AAGGGTTATATACAGACTTTGTCATCGTTAATCAACAAGGTCATCGTGTTCGACCAAGGCAAGGCTATGTACATCATGTAGCAGTCAATCTTCCTACAGATACAGACTTAAATGACATTTATGAAAAAATAGCACGACAACCCAACCCTAACTCCGGCATTATCGATCGATACTTCTTTAAATCATTATACTATCGACATAACCAAATACTATTTGAATTTGCGACAGCAGAGCCAGGATTTACCGTTGATACACCCGTCGATAAACTAGGTCAACAACTCAACCTCCCCGATTTTCTAGAGGACAAAAGAGACGAGATTGAAAGCCAATTGAGAGAAATATAGAGGACAATGTTAAAGCACTCGCTATTACGGCGCGTGCTTATTTGTGGTTATAAAAGTAGATTTTTATTTGTTTAAGATATATATTTAGATTATCAAGTAGATAATACGAAAAATGGATTACTAAAATTTTTAGTAGTAGAGTTTTATATGCTAGAG # Right flank : ATAATATTTTAGTTGCAATGCTATTGAATAACAATTATAATTTAATTACAGAGAACAAGTTTAGCTAACTTGTACTCATACCTAAAATTACAGAATCTACTGAAACAAGACTATATGTCGTGTTTATCCCACTAATTTATTAGTGGGATTTTTTGTGTTTTAGTACAACTTCTGTAGAAAAAATATAAAAAGTAGTGCCACGTTTATTGGTTTTAAATTATAATAAAATAAAACAAATAAGGTGGGTGTAAACTATGAAAGAAAAATATATTTTAGGTTTAGATTTAGGTATTACATCAGTAGGATATGGAATTATTAATTTTGAAACTAAAAAGATTATAGATGCAGGCGTTAGGCTTTTTCCAGAAGCAAACATAGATAATAATGAAGGTCGTAGAAGTAAAAGAGGATCTAGACGATTAAAAAGGAGAAGAATACATAGATTAGATCGAGTGAAATCATTACTCACAGAATATAACTTAATAAATAGAGAACAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAGTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.60,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //