Array 1 40811-41610 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYYL01000006.1 Eikenella corrodens strain EI_08 NODE_6_length_64505_cov_58.6529, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 40811 36 100.0 32 .................................... GTAAATCAAAAGCCATTATGCTTTCCTTTCAA 40879 36 100.0 33 .................................... AGATGGTTTTGTCGCAGAAACGCTTAGGGATGC 40948 36 100.0 32 .................................... GCAACGTGAGCAACGAAGCCGTAGCCGTGTTC 41016 36 100.0 33 .................................... AATTTGCGCCAGCGGTAAAACTCAATACTGTTA 41085 36 100.0 33 .................................... GCATGGTGGCGTGAGGACGAGACGCCGTGGTGT 41154 36 100.0 34 .................................... GCATCATAAAACCTCCCAACCTTCAAAGGGATTT 41224 36 100.0 34 .................................... CTCAAAGCCAACCTTCCCGCCATCGTATTGATGG 41294 36 100.0 33 .................................... GCCACATGCTCGTTAAAATTGTTTTGCATTTTA 41363 36 100.0 34 .................................... ATAATCCCGGAATAATCCATAGCTTATGGTCAAA 41433 36 100.0 35 .................................... TCTTCAAACAGCATTGCCCATTTGCTGCTATTGGC 41504 36 100.0 34 .................................... CAATCACCGTAACCGATGTCAACTGCTAAAATAG 41574 36 94.4 0 ..............................A...T. | T [41607] ========== ====== ====== ====== ==================================== =================================== ================== 12 36 99.5 33 GTCGGAAGACTTGCCCCACTCATCGGGGATTAAGAC # Left flank : AACCAACTGATTTTTTGCGAACTCAAATCCGATTTAAGCTCCCAAAGCAAGCTGGCAGACCCGCTAAGGCAAGTAATCGACCAAAGCCTCAACATGGGCAAAGTACGCCGCGTCCTGATTTTATCGCCCAAAATCCAAAATGATTACCAAAAAGACGCAAGTAAAAAACAACAATGGACAGAATTTGAACGCAACTGTGCCGCCAAAAATATCCAAATCATCATTGCCCGCGACAAAGAGGCTCTAAAAGAGCTGTCGAGTTGACATAAGTGGATGCTTTACATTGTTCAGCCGCAGGAAAATATTAAAAACATTGAGGCCAGCAAAACCCGCGGCTATAATCCCTACTACAAGTTTTCGGATAGATGACAAAAGTCTGTCTTTCGATCGCTCTTTTTAGTAAAGATTTCATTAAATAATGTTTTTGTTGGTTAAGAAATATACTAACTATTCTTAACTATGCAGAAATTTGAAAATAATGGGATTTTTAATTTAGCGCA # Right flank : CAAACAGCCTTGATGGTTTGTTCCATCAAGGCTGTTTTTTTACATCGGGCTTTTCTTTCAGGCTACCTGAATAATGCGGTACTGCCCGTTGCCAAATACGGTTTCTTTTCCCAAATGCAACCATTGCCCGATATACAGCATTTGCGAGAAAGCAGGCGAAAGATTGGTCAGTTGCCATGTGCCGATTACGCCGCTGAGTGGGGTGGTTTGCTTTTGGCGGTTGGAAAAACGGTGGTACTCATGCCATGAAAACTGTGGAGGGAAACCCTGCCCGCCGATTTGGGCCGATAGCTCAGCAGTGTTCGTGTGATTATGCCAGTGCAGATGGGCCAGTGTCAGATAACGGCGCAGAAGTTGGCGCAAGAAAATCTCTTGCATAAGTTCGGTTTCGCGCAAAATCTTGCCTTTTTGTTGGATGCGCAGGGGTGTGAGCAGCCGAATATGCACTTGTGTAGGATAGCGTTCAGGCAGCCGAAGACTGTTATTGTGCTGCTCAATAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTCATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 2 48263-46492 **** Predicted by CRISPRDetect 2.4 *** >NZ_VYYL01000006.1 Eikenella corrodens strain EI_08 NODE_6_length_64505_cov_58.6529, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================== ================== 48262 36 100.0 32 .................................... TTCGGCAGATTGTGCATTTGACACATCGCTGC 48194 36 100.0 35 .................................... CTCCTGCCCGGAAACCACCGAATGCACCAAACGTC 48123 36 100.0 33 .................................... CTGCGCTTGCAAATAAGCCTGAATAACGTTGCC 48054 36 100.0 34 .................................... AATTGGGGTGTGGAGTTTGCCGTTAAAACCCTAT 47984 36 100.0 32 .................................... GGAGCGTGAACAGGGTTTATCGCCTGAGCAGC 47916 36 100.0 33 .................................... TGCAAAGGCTTCCGTAAAGAAGGCTTGTCATTA 47847 36 100.0 33 .................................... AATACAAATTGGTTTGGCTCGCTAAAGTGGTAA 47778 36 100.0 33 .................................... GCTACAAGGAGCGTTTCAGCTATCGGACGGATA 47709 36 100.0 33 .................................... GCAATCATGCCAGTGTCTTTGCAGTATTGAATC 47640 36 100.0 35 .................................... ATAGCGAGTAGTGAGTGACACTTAATCACGGTGTC 47569 36 100.0 32 .................................... GTTAAAGGGTCTGCACTTCAAGAGAACATTAT 47501 36 100.0 34 .................................... GTCAATGCTGCTAAGATTGTAGCTATCCATTCTA 47431 36 100.0 35 .................................... GCATAATAGCCACTTGTTGCACGCTCTTTTGTGGC 47360 36 100.0 33 .................................... CTCTTTGAGCGTTGGCACTTTGCCAGTAGCTTT 47291 36 100.0 33 .................................... CTCTTTGAGCGTTGGCACTTTGCCAGTAGCTTT 47222 36 100.0 33 .................................... CTCTTTGAGCGTTGGCACTTTGCCAGTAGCTTT 47153 36 100.0 33 .................................... CTCTTTGAGCGTTGGCACTTTGCCAGTAGCTTT 47084 36 100.0 33 .................................... CTCTTTGAGCGTTGGCACTTTGCCAGTAGCTTT 47015 36 100.0 34 .................................... ATTTTTGCATGTTCTCTTTCCTTTTCCACTTCGG 46945 36 100.0 34 .................................... TTATGCCGGGCGGCGCAGTCGTTATACAGATGCA 46875 36 100.0 34 .................................... GTCAATAGCGGCTACGAAACCTTCACAAGCCTCA 46805 36 100.0 34 .................................... GCGAACAACCCGTCCACCACGTTACTGTTGTCAT 46735 36 100.0 34 .................................... TCCTCCAGCTCGGCGGCGGGCTGCTCGTAGTTAG 46665 36 100.0 33 .................................... ATATCCTGCGGGCTTAATTCACGGCGGCCTTGC 46596 36 100.0 33 .................................... ACAGGTAGCCGTGGGATTTGAGCGGGGTTTTCA 46527 36 86.1 0 ................T.T....T....C....A.. | ========== ====== ====== ====== ==================================== =================================== ================== 26 36 99.5 33 GTCGGAAGACTTGCCCCACTCATCGGGGATTAAGAC # Left flank : CATGGCAAGACCGAATGGCGGCGCACACAAACATGACCGTAGGCAATCAAGCACACGATACACTCTATAAAGAATGGAAGGTAGCTCTGCAAACTGCCGCAGAAAGTCCCGATTTCAACGCGGCAGAGAAAGCCGAAATCGCCGCCGAATTTGCAGTCAAAAAAATGAGGTCAAAATACACGAAATGGCTGACCGACAAGCGCGGCAAAGAGCTGAAACCCATCTTGGCGAAGTTGCGCGGCGAATAATAAGCTATTGGCCTTGCAGAAACCCAAAATTTTCAGGTAGCTAAAGCTGTTAAATTGTTGAAAAACGTTGTGAAATTTAAGGTGTGCCGCTATAATCTGTACCACAAGCTTCCGATGGATAGCGAAGTATCTGTCTTTCGACTGCTCTTTTTATGAATATTTGTTAAATAAAGTCTTTGTTGGTTAAGAAAAAAGCTAACTCTTCTTAACTCAATAATAGATTGAAAGTAATTAGATTTTTAAACTGATGCA # Right flank : TTTTCAGGTAGCCTCAAGTAGGCTACCTGAAAATGTTGGAAGACGTGTCGGTCTATTAGGGATAAACAGCAAAATAGCCTTGATGTAATATCAAGGCTATTTTTGTTTTCGGGCTACCTGAAAGTGGATTTGCGTTTACAGCGTGCCGATGCTGCCTAATATGATGCCTTCGAGCAAGGCTGGTTTGCCCAGCGAATGGATAATGCTGCTGTTGGGCAGGGGATAGAAGCGTAAATTGTCTTGTTTGGCGCTGAGCATGGTGCAAAGTGTGTCAAAACATTGCCGTGCTTGCTCGCGGTTGCCAATGTGTAGAAATACGCTGTTTTGCAGGGGAATGGCGTGCTGGATTAAATAACGGTGTGCTTTTTGCAGGCGGCGTGGGCTGGCGATGTCGTAGGCGATGAGATAGCGCATTTTTATTCCAAAGTGGCGAGCTCGCTTAATTGGATTGCAGGCTGTTGGCTGTAGTGGGCGAGGGTGGCTAAATAGTTGGTACAGAG # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGAAGACTTGCCCCACTCATCGGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA //