Array 1 166393-164729 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWH01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain C_NS-008 NODE_2_length_617303_cov_42.032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 166392 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 166331 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 166270 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 166209 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 166142 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 166081 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 166020 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 165959 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 165898 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 165837 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 165776 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 165715 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 165654 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 165593 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 165532 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 165471 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 165410 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 165349 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 165288 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 165185 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 165124 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 165063 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 165002 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 164941 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 164880 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 164819 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 164758 29 96.6 0 A............................ | A [164731] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 183777-182651 **** Predicted by CRISPRDetect 2.4 *** >NZ_PGWH01000002.1 Salmonella enterica subsp. enterica serovar Heidelberg strain C_NS-008 NODE_2_length_617303_cov_42.032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 183776 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 183715 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 183654 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 183593 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 183532 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 183471 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 183410 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 183349 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 183288 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 183227 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 183166 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 183105 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 183044 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 182983 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 182922 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 182861 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 182800 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 182739 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 182678 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //